Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0245651 Helianthus annuus HOM05D001994 ORTHO05D001954 5.2e-20 100.1 52 100.0
MD02G1205800 Malus domestica HOM05D001994 ORTHO05D001954 2.1e-13 78.2 50 82.0
Prupe.2G140500 Prunus persica HOM05D001994 ORTHO05D001954 2.1e-13 78.2 50 82.0
QL04p039480 Quercus lobata HOM05D001994 ORTHO05D001954 2.1e-13 78.2 50 82.0
RcHm_v2.0_Chr1g0349411 Rosa chinensis HOM05D001994 ORTHO05D001954 2.1e-13 78.2 50 82.0
MD07G1117300 Malus domestica HOM05D001994 ORTHO05D001954 4.7e-13 77.0 50 80.0
Haze_02658 Corylus avellana HOM05D001994 ORTHO05D001954 6.1e-13 76.6 50 82.0
EL10Ac1g00848 Beta vulgaris HOM05D001994 ORTHO05D001954 8.0e-13 76.3 50 78.0
CANSAT56G3632 Cannabis sativa HOM05D001994 ORTHO05D001954 8.0e-13 76.3 50 80.0
MELO3C003263.2 Cucumis melo HOM05D001994 ORTHO05D001954 8.0e-13 76.3 50 80.0
CsaV3_4G029820 Cucumis sativus L. HOM05D001994 ORTHO05D001954 8.0e-13 76.3 50 80.0
unitig_8.g3386 Utricularia gibba HOM05D001994 ORTHO05D001954 8.0e-13 76.3 50 80.0
MSTRG.28184 Avicennia marina HOM05D001994 ORTHO05D001954 1.0e-12 75.9 50 80.0
CARHR140430 Cardamine hirsuta HOM05D001994 ORTHO05D001954 1.0e-12 75.9 50 78.0
Phvul.010G079401 Phaseolus vulgaris HOM05D001994 ORTHO05D001954 1.0e-12 75.9 50 80.0
arahy.Tifrunner.gnm1.ann1.52K6P9 Arachis hypogaea HOM05D001994 ORTHO05D001954 1.4e-12 75.5 50 80.0
arahy.Tifrunner.gnm1.ann1.N274YR Arachis hypogaea HOM05D001994 ORTHO05D001954 1.4e-12 75.5 50 80.0
CSS0025456 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 1.4e-12 75.5 50 78.0
Glyma.01G137300 Glycine max HOM05D001994 ORTHO05D001954 1.4e-12 75.5 50 80.0
Glyma.03G029700 Glycine max HOM05D001994 ORTHO05D001954 1.4e-12 75.5 50 80.0
Lj9C567G12 Lonicera japonica HOM05D001994 ORTHO05D001954 1.4e-12 75.5 50 80.0
Lj3g0015727 Lotus japonicus HOM05D001994 ORTHO05D001954 1.4e-12 75.5 50 80.0
Medtr4g025850 Medicago truncatula HOM05D001994 ORTHO05D001954 1.4e-12 75.5 50 80.0
Psat0s2427g0040 Pisum sativum HOM05D001994 ORTHO05D001954 1.4e-12 75.5 50 80.0
TPR.G4984 Trifolium pratense HOM05D001994 ORTHO05D001954 1.4e-12 75.5 50 80.0
VMungo0331G1813 Vigna mungo HOM05D001994 ORTHO05D001954 1.4e-12 75.5 50 80.0
CiPaw.13G033900 Carya illinoinensis HOM05D001994 ORTHO05D001954 1.8e-12 75.1 50 78.0
FvH4_7g11270 Fragaria vesca HOM05D001994 ORTHO05D001954 1.8e-12 75.1 50 80.0
FAN01G2352 Fragaria x ananassa HOM05D001994 ORTHO05D001954 1.8e-12 75.1 50 80.0
FAN03G0044 Fragaria x ananassa HOM05D001994 ORTHO05D001954 1.8e-12 75.1 50 80.0
FAN06G0063 Fragaria x ananassa HOM05D001994 ORTHO05D001954 1.8e-12 75.1 50 80.0
FAN06G0075 Fragaria x ananassa HOM05D001994 ORTHO05D001954 1.8e-12 75.1 50 80.0
FAN10G0180 Fragaria x ananassa HOM05D001994 ORTHO05D001954 1.8e-12 75.1 50 80.0
FAN10G3662 Fragaria x ananassa HOM05D001994 ORTHO05D001954 1.8e-12 75.1 50 80.0
Lj7A532G47 Lonicera japonica HOM05D001994 ORTHO05D001954 1.8e-12 75.1 50 80.0
Lj7A533G25 Lonicera japonica HOM05D001994 ORTHO05D001954 1.8e-12 75.1 50 80.0
Nitab4.5_0000859g0340 Nicotiana tabacum HOM05D001994 ORTHO05D001954 1.8e-12 75.1 50 80.0
Cpa.g.sc145.5 Carica papaya HOM05D001994 ORTHO05D001954 2.3e-12 74.7 50 78.0
DCAR_010129 Daucus carota HOM05D001994 ORTHO05D001954 2.3e-12 74.7 48 81.2
ECA234G2411 Erigeron canadensis HOM05D001994 ORTHO05D001954 2.3e-12 74.7 50 78.0
ClCG04G003190 Citrullus lanatus HOM05D001994 ORTHO05D001954 3.0e-12 74.3 50 78.0
Lalb_Chr19g0127351 Lupinus albus HOM05D001994 ORTHO05D001954 3.0e-12 74.3 50 78.0
Ca_02142_v3 Cicer arietinum L. HOM05D001994 ORTHO05D001954 4.0e-12 73.9 50 78.0
Lalb_Chr07g0190121 Lupinus albus HOM05D001994 ORTHO05D001954 4.0e-12 73.9 50 76.0
PGR004G0699 Punica granatum HOM05D001994 ORTHO05D001954 4.0e-12 73.9 50 78.0
AL4G44320 Arabidopsis lyrata HOM05D001994 ORTHO05D001954 5.2e-12 73.6 50 76.0
AT2G45200 Arabidopsis thaliana HOM05D001994 ORTHO05D001954 5.2e-12 73.6 50 76.0
MSTRG.17169 Avicennia marina HOM05D001994 ORTHO05D001954 5.2e-12 73.6 50 76.0
Carub.0004s2782 Capsella rubella HOM05D001994 ORTHO05D001954 5.2e-12 73.6 50 76.0
Cfa011190 Carpinus fangiana HOM05D001994 ORTHO05D001954 5.2e-12 73.6 50 78.0
Ciclev10021976m.g Citrus clementina HOM05D001994 ORTHO05D001954 5.2e-12 73.6 50 76.0
HanXRQChr09g0245661 Helianthus annuus HOM05D001994 ORTHO05D001954 5.2e-12 73.6 50 78.0
HanXRQChr16g0520051 Helianthus annuus HOM05D001994 ORTHO05D001954 5.2e-12 73.6 50 78.0
HanXRQChr16g0520081 Helianthus annuus HOM05D001994 ORTHO05D001954 5.2e-12 73.6 50 78.0
Lsat_1_v5_gn_4_42700 Lactuca sativa HOM05D001994 ORTHO05D001954 5.2e-12 73.6 50 78.0
CAN.G1469.3 Capsicum annuum HOM05D001994 ORTHO05D001954 6.8e-12 73.2 49 79.6
COL.COLO4_12513 Corchorus olitorius HOM05D001994 ORTHO05D001954 6.8e-12 73.2 49 75.5
Thhalv10001610m.g Eutrema salsugineum HOM05D001994 ORTHO05D001954 6.8e-12 73.2 50 76.0
Potri.014G066800 Populus trichocarpa HOM05D001994 ORTHO05D001954 6.8e-12 73.2 50 76.0
Sabra14G0046900 Salix brachista HOM05D001994 ORTHO05D001954 6.8e-12 73.2 50 76.0
AagrBONN_evm.TU.Sc2ySwM_228.4803 Anthoceros agrestis HOM05D001994 ORTHO05D001954 8.8e-12 72.8 50 76.0
EL10Ac6g14283 Beta vulgaris HOM05D001994 ORTHO05D001954 8.8e-12 72.8 50 78.0
Eucgr.D02473 Eucalyptus grandis HOM05D001994 ORTHO05D001954 8.8e-12 72.8 50 76.0
CiPaw.14G026700 Carya illinoinensis HOM05D001994 ORTHO05D001954 1.2e-11 72.4 50 76.0
CDE11G0946 Ceratophyllum demersum HOM05D001994 ORTHO05D001954 1.2e-11 72.4 50 74.0
Dinv43683 Davidia involucrata HOM05D001994 ORTHO05D001954 1.2e-11 72.4 50 76.0
Dinv44134 Davidia involucrata HOM05D001994 ORTHO05D001954 1.2e-11 72.4 50 76.0
Duzib133G0275 Durio zibethinus HOM05D001994 ORTHO05D001954 1.2e-11 72.4 50 76.0
Migut.N01620 Erythranthe guttata HOM05D001994 ORTHO05D001954 1.2e-11 72.4 50 74.0
Manes.01G268000 Manihot esculenta HOM05D001994 ORTHO05D001954 1.2e-11 72.4 50 76.0
Nn1g01089 Nelumbo nucifera HOM05D001994 ORTHO05D001954 1.2e-11 72.4 50 76.0
Thecc.01G380100 Theobroma cacao HOM05D001994 ORTHO05D001954 1.2e-11 72.4 50 76.0
TWI59G0055 Tripterygium wilfordii HOM05D001994 ORTHO05D001954 1.2e-11 72.4 50 76.0
TAR629G2471 Trochodendron aralioides HOM05D001994 ORTHO05D001954 1.2e-11 72.4 50 76.0
TAR636G0026 Trochodendron aralioides HOM05D001994 ORTHO05D001954 1.2e-11 72.4 50 76.0
GSVIVG01027649001 Vitis vinifera HOM05D001994 ORTHO05D001954 1.2e-11 72.4 50 76.0
A04p33700 Brassica napus HOM05D001994 ORTHO05D001954 1.5e-11 72.0 50 74.0
BraA04t18832Z Brassica rapa HOM05D001994 ORTHO05D001954 1.5e-11 72.0 50 74.0
AUR62004176 Chenopodium quinoa HOM05D001994 ORTHO05D001954 1.5e-11 72.0 50 74.0
AUR62013675 Chenopodium quinoa HOM05D001994 ORTHO05D001954 1.5e-11 72.0 50 74.0
Oeu055511.1 Olea europaea HOM05D001994 ORTHO05D001954 1.5e-11 72.0 50 74.0
Peaxi162Scf00013g02411 Petunia axillaris HOM05D001994 ORTHO05D001954 1.5e-11 72.0 50 78.0
Pp3c4_11440 Physcomitrium patens HOM05D001994 ORTHO05D001954 1.5e-11 72.0 50 76.0
Hund17039 Selenicereus undatus HOM05D001994 ORTHO05D001954 1.5e-11 72.0 50 74.0
Aa31LG1G26750 Aethionema arabicum HOM05D001994 ORTHO05D001954 2.0e-11 71.6 50 74.0
Cc00_g13820 Coffea canephora HOM05D001994 ORTHO05D001954 2.0e-11 71.6 50 76.0
THA.LOC104817228 Tarenaya hassleriana HOM05D001994 ORTHO05D001954 2.0e-11 71.6 50 74.0
EL10Ac9g20882 Beta vulgaris HOM05D001994 ORTHO05D001954 2.6e-11 71.2 50 76.0
Mapoly0016s0161 Marchantia polymorpha HOM05D001994 ORTHO05D001954 2.6e-11 71.2 50 74.0
Sp4g27250 Schrenkiella parvula HOM05D001994 ORTHO05D001954 2.6e-11 71.2 50 74.0
SpUn0031_0070 Schrenkiella parvula HOM05D001994 ORTHO05D001954 2.6e-11 71.2 50 74.0
THA.LOC104802459 Tarenaya hassleriana HOM05D001994 ORTHO05D001954 2.6e-11 71.2 50 74.0
Ah.05g174670 Amaranthus hybridus HOM05D001994 ORTHO05D001954 3.4e-11 70.9 50 74.0
Nn6g34048 Nelumbo nucifera HOM05D001994 ORTHO05D001954 3.4e-11 70.9 50 74.0
Nitab4.5_0006445g0050 Nicotiana tabacum HOM05D001994 ORTHO05D001954 3.4e-11 70.9 50 76.0
EL10Ac8g19285 Beta vulgaris HOM05D001994 ORTHO05D001954 4.4e-11 70.5 50 76.0
Duzib268G0263 Durio zibethinus HOM05D001994 ORTHO05D001954 4.4e-11 70.5 50 74.0
Duzib268G0340 Durio zibethinus HOM05D001994 ORTHO05D001954 4.4e-11 70.5 50 74.0
Gohir.A07G146500 Gossypium hirsutum HOM05D001994 ORTHO05D001954 4.4e-11 70.5 50 74.0
Gohir.D07G152600 Gossypium hirsutum HOM05D001994 ORTHO05D001954 4.4e-11 70.5 50 74.0
Gorai.001G174700 Gossypium raimondii HOM05D001994 ORTHO05D001954 4.4e-11 70.5 50 74.0
Sed0000014 Sechium edule HOM05D001994 ORTHO05D001954 4.4e-11 70.5 50 74.0
CSS0003818 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 5.7e-11 70.1 49 73.5
CSS0036564 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 5.7e-11 70.1 49 73.5
CDE09G0219 Ceratophyllum demersum HOM05D001994 ORTHO05D001954 5.7e-11 70.1 50 72.0
Solyc01g091020.3 Solanum lycopersicum HOM05D001994 ORTHO05D001954 5.7e-11 70.1 49 77.6
Sopen01g036750 Solanum pennellii HOM05D001994 ORTHO05D001954 5.7e-11 70.1 49 77.6
PGSC0003DMG400025968 Solanum tuberosum HOM05D001994 ORTHO05D001954 5.7e-11 70.1 49 77.6
SGA_v2.0_scaffold43G16503 Striga asiatica HOM05D001994 ORTHO05D001954 5.7e-11 70.1 50 74.0
BolC4t28651H Brassica oleracea HOM05D001994 ORTHO05D001954 7.5e-11 69.7 50 72.0
Oeu064475.1 Olea europaea HOM05D001994 ORTHO05D001954 7.5e-11 69.7 50 72.0
TWI14G0332 Tripterygium wilfordii HOM05D001994 ORTHO05D001954 7.5e-11 69.7 50 74.0
MSTRG.4903 Avicennia marina HOM05D001994 ORTHO05D001954 9.8e-11 69.3 50 72.0
Duzib138G1575 Durio zibethinus HOM05D001994 ORTHO05D001954 9.8e-11 69.3 50 72.0
Gorai.007G089800 Gossypium raimondii HOM05D001994 ORTHO05D001954 9.8e-11 69.3 50 72.0
Rhsim07G0030200 Rhododendron simsii HOM05D001994 ORTHO05D001954 9.8e-11 69.3 50 72.0
Sc02g0002710 Simmondsia chinensis HOM05D001994 ORTHO05D001954 9.8e-11 69.3 50 72.0
vmacro13430 Vaccinium macrocarpon HOM05D001994 ORTHO05D001954 1.3e-10 68.9 48 72.9
BcaB01g03282 Brassica carinata HOM05D001994 ORTHO05D001954 2.2e-10 68.2 50 72.0
PSO017G4197 Papaver somniferum HOM05D001994 ORTHO05D001954 2.2e-10 68.2 50 72.0
PSO170G1942 Papaver somniferum HOM05D001994 ORTHO05D001954 2.2e-10 68.2 50 72.0
Atru.chr5.270 Acer truncatum HOM05D001994 ORTHO05D001954 3.7e-10 67.4 50 72.0
Aqoxy5G03934 Aquilegia oxysepala HOM05D001994 ORTHO05D001954 3.7e-10 67.4 50 70.0
C04p71430 Brassica napus HOM05D001994 ORTHO05D001954 3.7e-10 67.4 50 70.0
TPR.G39081 Trifolium pratense HOM05D001994 ORTHO05D001954 3.7e-10 67.4 50 70.0
Actinidia22752 Actinidia chinensis HOM05D001994 ORTHO05D001954 4.8e-10 67.0 49 71.4
Actinidia22807 Actinidia chinensis HOM05D001994 ORTHO05D001954 4.8e-10 67.0 49 71.4
HPP92_008916 Vanilla planifolia HOM05D001994 ORTHO05D001954 4.8e-10 67.0 50 68.0
HPP92_028204 Vanilla planifolia HOM05D001994 ORTHO05D001954 4.8e-10 67.0 50 68.0
ATR0568G117 Amborella trichopoda HOM05D001994 ORTHO05D001954 6.3e-10 66.6 50 68.0
BcaC01g05150 Brassica carinata HOM05D001994 ORTHO05D001954 6.3e-10 66.6 50 70.0
A03p25100 Brassica napus HOM05D001994 ORTHO05D001954 6.3e-10 66.6 50 70.0
C03p29940 Brassica napus HOM05D001994 ORTHO05D001954 6.3e-10 66.6 50 70.0
BolC3t15341H Brassica oleracea HOM05D001994 ORTHO05D001954 6.3e-10 66.6 50 70.0
BraA03t11712Z Brassica rapa HOM05D001994 ORTHO05D001954 6.3e-10 66.6 50 70.0
Ca_25721_v3 Cicer arietinum L. HOM05D001994 ORTHO05D001954 1.1e-09 65.9 50 68.0
SMO146G0366 Selaginella moellendorffii HOM05D001994 ORTHO05D001954 1.1e-09 65.9 50 68.0
Pp3c12_18190 Physcomitrium patens HOM05D001994 ORTHO05D001954 1.4e-09 65.5 48 70.8
Solyc01g150147.1 Solanum lycopersicum HOM05D001994 ORTHO05D001954 1.4e-09 65.5 47 76.6
MBI04_g25317_MAGBIO Magnolia biondii HOM05D001994 ORTHO05D001954 1.8e-09 65.1 50 66.0
TAR375G0883 Trochodendron aralioides HOM05D001994 ORTHO05D001954 1.8e-09 65.1 49 69.4
Potri.002G145200 Populus trichocarpa HOM05D001994 ORTHO05D001954 3.1e-09 64.3 50 72.0
Os02g0126800 Oryza sativa ssp. japonica HOM05D001994 ORTHO05D001954 5.4e-09 63.5 50 66.0
Sabra02G0113100 Salix brachista HOM05D001994 ORTHO05D001954 5.4e-09 63.5 50 70.0
PGR042G2780 Punica granatum HOM05D001994 ORTHO05D001954 9.1e-09 62.8 50 64.0
ATR0090G047 Amborella trichopoda HOM05D001994 ORTHO05D001954 2.0e-08 61.6 50 62.0
CBR_g20431 Chara braunii HOM05D001994 ORTHO05D001954 2.0e-08 61.6 50 64.0
Nn4g26396 Nelumbo nucifera HOM05D000772 ORTHO05D001954 3.8e-07 57.4 44 65.9


User provided reference genes

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