Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 9.9e-123 444.1 355 100.0
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 7.5e-54 215.3 356 66.3
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 1.9e-49 200.7 347 69.7
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 4.3e-49 199.5 349 61.3
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 4.7e-48 196.1 332 56.9
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.1e-47 194.9 336 55.1
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 8.9e-47 191.8 327 64.2
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 4.4e-46 189.5 355 60.6
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 9.8e-46 188.3 351 59.8
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.2e-45 187.2 332 65.7
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 2.9e-45 186.8 332 67.2
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 3.7e-45 186.4 354 65.0
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 4.9e-45 186.0 336 65.5
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 4.9e-45 186.0 340 61.8
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 6.4e-45 185.7 352 55.4
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 6.4e-45 185.7 317 61.2
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 8.3e-45 185.3 338 67.5
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 8.3e-45 185.3 332 67.2
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 1.1e-44 184.9 317 65.3
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 1.9e-44 184.1 316 68.0
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 1.9e-44 184.1 355 60.6
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 2.4e-44 183.7 324 60.5
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 2.4e-44 183.7 343 56.3
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 3.2e-44 183.3 351 58.7
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 3.2e-44 183.3 307 58.3
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 3.2e-44 183.3 352 67.0
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 2.7e-43 180.3 333 68.5
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 2.7e-43 180.3 332 62.3
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 6.0e-43 179.1 343 54.8
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 1.0e-42 178.3 336 56.0
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.3e-42 177.9 332 56.0
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 2.3e-42 177.2 349 59.6
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 3.0e-42 176.8 333 46.5
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 3.9e-42 176.4 338 57.1
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 3.9e-42 176.4 375 60.8
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 5.1e-42 176.0 342 63.2
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 6.6e-42 175.6 354 53.7
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 6.6e-42 175.6 308 70.1
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 1.1e-41 174.9 336 55.4
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 1.5e-41 174.5 339 61.1
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 4.3e-41 172.9 330 67.0
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 7.3e-41 172.2 326 60.7
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 7.3e-41 172.2 335 65.1
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 1.2e-40 171.4 335 63.0
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 1.2e-40 171.4 335 63.0
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 1.2e-40 171.4 335 63.0
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 1.2e-40 171.4 335 63.0
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.6e-40 171.0 317 64.7
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 2.1e-40 170.6 335 62.1
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 2.8e-40 170.2 335 62.4
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 3.6e-40 169.9 295 65.4
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 3.6e-40 169.9 335 59.4
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 6.2e-40 169.1 362 53.9
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 8.1e-40 168.7 314 68.2
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 1.1e-39 168.3 327 63.0
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.4e-39 167.9 295 71.5
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.4e-39 167.9 343 56.0
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 1.4e-39 167.9 349 64.2
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 2.3e-39 167.2 347 55.0
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 3.1e-39 166.8 332 61.4
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 3.1e-39 166.8 337 55.8
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 3.1e-39 166.8 314 66.9
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 6.8e-39 165.6 341 56.0
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 6.8e-39 165.6 341 56.0
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 8.9e-39 165.2 344 57.0
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 8.9e-39 165.2 365 51.0
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 1.2e-38 164.9 317 63.7
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 1.5e-38 164.5 374 59.9
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 4.4e-38 162.9 316 67.7
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 5.8e-38 162.5 325 58.2
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 9.9e-38 161.8 361 43.2
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 9.9e-38 161.8 329 54.7
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.7e-37 161.0 326 62.3
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 1.7e-37 161.0 332 62.7
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 2.2e-37 160.6 323 60.1
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 3.7e-37 159.8 319 64.9
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 4.9e-37 159.5 353 59.8
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 8.3e-37 158.7 334 56.0
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 1.1e-36 158.3 317 64.7
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 1.4e-36 157.9 336 64.3
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 2.4e-36 157.1 314 66.2
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 2.4e-36 157.1 353 59.5
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 3.2e-36 156.8 336 60.1
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 3.2e-36 156.8 315 65.7
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 4.1e-36 156.4 346 54.0
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 4.1e-36 156.4 342 60.8
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 7.1e-36 155.6 285 63.9
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 1.6e-35 154.5 314 61.1
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 2.1e-35 154.1 345 62.0
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 2.7e-35 153.7 331 51.4
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 4.6e-35 152.9 363 48.5
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 1.0e-34 151.8 315 60.3
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 1.3e-34 151.4 322 60.2
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 3.0e-34 150.2 319 65.8
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 3.9e-34 149.8 348 62.9
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 6.6e-34 149.1 349 62.2
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 1.9e-33 147.5 299 62.5
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 2.5e-33 147.1 333 58.3
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 7.3e-33 145.6 334 61.1
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 7.3e-33 145.6 324 61.4
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 1.2e-32 144.8 352 54.0
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 1.2e-32 144.8 357 54.3
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 1.6e-32 144.4 348 60.1
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 1.6e-32 144.4 353 51.6
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 1.6e-32 144.4 330 61.5
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 2.8e-32 143.7 332 64.2
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 3.6e-32 143.3 294 62.2
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 3.6e-32 143.3 307 55.4
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 3.6e-32 143.3 307 55.4
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 3.6e-32 143.3 349 63.3
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 4.7e-32 142.9 294 61.9
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 4.7e-32 142.9 297 68.7
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 4.7e-32 142.9 314 61.1
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.1e-31 141.7 327 63.3
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 1.4e-31 141.4 332 62.3
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 1.4e-31 141.4 344 42.2
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 1.8e-31 141.0 332 62.3
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 2.0e-30 137.5 319 64.9
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 2.0e-30 137.5 381 39.6
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 5.8e-30 136.0 307 62.9
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 5.8e-30 136.0 331 61.3
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 7.6e-30 135.6 296 67.2
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 7.6e-30 135.6 308 64.9
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 7.6e-30 135.6 311 51.1
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 2.9e-29 133.7 307 64.2
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 2.9e-29 133.7 307 64.2
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 3.8e-29 133.3 308 63.6
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 4.9e-29 132.9 365 56.2
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 4.9e-29 132.9 348 60.3
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 8.4e-29 132.1 323 56.3
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 1.4e-28 131.3 313 62.0
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 1.9e-28 131.0 353 56.4
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.9e-28 131.0 347 49.0
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.9e-28 131.0 357 55.5
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 4.2e-28 129.8 331 62.5
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 7.1e-28 129.0 356 52.0
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 9.3e-28 128.6 307 63.2
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.6e-27 127.9 265 73.2
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 2.7e-27 127.1 282 57.1
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 2.7e-27 127.1 319 58.3
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 6.0e-27 125.9 309 35.6
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 1.3e-26 124.8 372 50.8
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 1.7e-26 124.4 328 55.5
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 6.6e-26 122.5 313 57.5
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 6.6e-26 122.5 359 46.0
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 2.5e-25 120.6 313 57.2
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 5.6e-25 119.4 319 54.9
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 7.3e-25 119.0 366 48.1
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 7.3e-25 119.0 271 71.2
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 1.3e-24 118.2 281 62.6
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 1.6e-24 117.9 316 57.3
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 4.8e-24 116.3 156 50.0
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 1.8e-23 114.4 360 50.6
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 5.8e-22 109.4 303 62.4
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 7.6e-22 109.0 97 56.7
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 7.6e-22 109.0 97 56.7
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 9.9e-22 108.6 323 59.4
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 1.3e-21 108.2 315 52.1
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 4.9e-21 106.3 97 56.7
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 8.4e-21 105.5 97 55.7
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 1.9e-20 104.4 328 52.1
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 2.1e-19 100.9 283 47.7
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 2.7e-19 100.5 353 52.7
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 6.0e-19 99.4 353 52.4
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.0e-18 98.6 280 47.9
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 3.0e-18 97.1 325 56.0
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 3.9e-18 96.7 349 49.9
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 8.7e-18 95.5 73 63.0
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 4.3e-17 93.2 344 37.5
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 5.6e-17 92.8 158 48.1
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 2.1e-16 90.9 323 35.3
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 3.1e-15 87.0 165 52.1
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 2.6e-14 84.0 152 52.6
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 7.6e-14 82.4 344 47.1
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 7.6e-14 82.4 344 47.1
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 7.6e-14 82.4 344 47.1
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.4e-12 78.2 355 51.5
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 5.5e-12 76.3 152 53.9
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 1.6e-11 74.7 149 57.7
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 7.9e-11 72.4 264 57.6
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 3.3e-09 67.0 78 44.9
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 3.7e-08 63.5 115 40.0
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 8.1e-08 62.4 261 51.0


User provided reference genes

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