Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0244991 Helianthus annuus HOM05D003020 ORTHO05D003226 3.1e-162 575.1 290 100.0
ECA240G3460 Erigeron canadensis HOM05D003020 ORTHO05D003226 2.3e-69 266.5 300 53.3
Lsat_1_v5_gn_7_54521 Lactuca sativa HOM05D003020 ORTHO05D003226 9.8e-68 261.2 300 52.7
Lsat_1_v5_gn_5_84881 Lactuca sativa HOM05D003020 ORTHO05D003226 4.7e-46 189.1 281 44.5
ECA234G3857 Erigeron canadensis HOM05D003020 ORTHO05D003226 2.9e-35 153.3 296 40.2
Hma1.2p1_1025F.1_g249270 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 2.8e-30 136.7 306 38.6
Dinv41250 Davidia involucrata HOM05D003020 ORTHO05D003226 1.2e-28 131.3 298 38.3
Actinidia04141 Actinidia chinensis HOM05D003020 ORTHO05D003226 6.4e-27 125.6 292 37.0
Oeu042166.1 Olea europaea HOM05D003020 ORTHO05D003226 1.1e-26 124.8 309 35.9
DCAR_014702 Daucus carota HOM05D003020 ORTHO05D003226 2.1e-25 120.6 304 35.2
Lj9C24T7 Lonicera japonica HOM05D003020 ORTHO05D003226 5.1e-24 115.9 285 34.7
RcHm_v2.0_Chr4g0402471 Rosa chinensis HOM05D003020 ORTHO05D003226 8.6e-24 115.2 301 36.5
MD13G1253900 Malus domestica HOM05D003020 ORTHO05D003226 1.1e-23 114.8 286 31.5
Rhsim01G0004800 Rhododendron simsii HOM05D003020 ORTHO05D003226 1.5e-23 114.4 300 34.7
Cpa.g.sc95.49 Carica papaya HOM05D003020 ORTHO05D003226 2.5e-23 113.6 316 35.1
Prupe.1G086100 Prunus persica HOM05D003020 ORTHO05D003226 4.3e-23 112.8 302 33.4
FvH4_4g08220 Fragaria vesca HOM05D003020 ORTHO05D003226 9.6e-23 111.7 288 35.8
Lj9P685T21 Lonicera japonica HOM05D003020 ORTHO05D003226 1.2e-22 111.3 249 37.3
DCAR_017969 Daucus carota HOM05D003020 ORTHO05D003226 1.6e-22 110.9 304 33.2
Migut.J01478 Erythranthe guttata HOM05D003020 ORTHO05D003226 1.6e-22 110.9 297 34.3
FAN12G0399 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.1e-22 110.5 288 35.4
Haze_22098 Corylus avellana HOM05D003020 ORTHO05D003226 2.8e-22 110.2 294 35.7
FAN17G2997 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.1e-21 108.2 298 34.6
FAN22G0428 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.1e-21 108.2 288 34.4
CANSAT11G1249 Cannabis sativa HOM05D003020 ORTHO05D003226 1.4e-21 107.8 306 32.7
Lj9A26T13 Lonicera japonica HOM05D003020 ORTHO05D003226 1.4e-21 107.8 285 35.1
Oeu004196.1 Olea europaea HOM05D003020 ORTHO05D003226 1.8e-21 107.5 274 34.7
Cfa013505 Carpinus fangiana HOM05D003020 ORTHO05D003226 4.0e-21 106.3 299 35.8
FAN07G1960 Fragaria x ananassa HOM05D003020 ORTHO05D003226 5.2e-21 105.9 290 33.4
Glyma.20G083700 Glycine max HOM05D003020 ORTHO05D003226 5.2e-21 105.9 296 31.4
MELO3C017464.2 Cucumis melo HOM05D003020 ORTHO05D003226 6.9e-21 105.5 289 32.5
Manes.14G153300 Manihot esculenta HOM05D003020 ORTHO05D003226 8.9e-21 105.1 297 34.0
Ca_21174_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 1.2e-20 104.8 293 30.4
Ca_21223_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 1.2e-20 104.8 293 30.4
Lalb_Chr12g0199391 Lupinus albus HOM05D003020 ORTHO05D003226 2.0e-20 104.0 295 31.2
ClCG06G013330 Citrullus lanatus HOM05D003020 ORTHO05D003226 7.6e-20 102.1 286 31.5
Glyma.17G063300 Glycine max HOM05D003020 ORTHO05D003226 9.9e-20 101.7 297 30.6
MD16G1257900 Malus domestica HOM05D003020 ORTHO05D003226 1.7e-19 100.9 287 31.4
PGR102G0964 Punica granatum HOM05D003020 ORTHO05D003226 1.7e-19 100.9 316 30.4
Psat0s2889g0080 Pisum sativum HOM05D003020 ORTHO05D003226 2.2e-19 100.5 297 30.6
Duzib168G2116 Durio zibethinus HOM05D003020 ORTHO05D003226 2.9e-19 100.1 301 32.2
Potri.006G168400 Populus trichocarpa HOM05D003020 ORTHO05D003226 3.8e-19 99.8 278 36.0
Lj4g0004544 Lotus japonicus HOM05D003020 ORTHO05D003226 4.9e-19 99.4 281 32.7
CiPaw.05G049400 Carya illinoinensis HOM05D003020 ORTHO05D003226 6.4e-19 99.0 281 33.5
CiPaw.07G192300 Carya illinoinensis HOM05D003020 ORTHO05D003226 6.4e-19 99.0 282 30.5
Manes.14G153500 Manihot esculenta HOM05D003020 ORTHO05D003226 6.4e-19 99.0 284 34.5
QL02p097728 Quercus lobata HOM05D003020 ORTHO05D003226 6.4e-19 99.0 316 34.2
CiPaw.08G036400 Carya illinoinensis HOM05D003020 ORTHO05D003226 8.4e-19 98.6 290 30.7
Ciclev10010819m.g Citrus clementina HOM05D003020 ORTHO05D003226 8.4e-19 98.6 321 31.8
COL.COLO4_35897 Corchorus olitorius HOM05D003020 ORTHO05D003226 1.9e-18 97.4 294 30.6
Sed0024933 Sechium edule HOM05D003020 ORTHO05D003226 4.2e-18 96.3 285 30.9
VMungo1215G0012 Vigna mungo HOM05D003020 ORTHO05D003226 4.2e-18 96.3 290 30.0
CsaV3_1G031590 Cucumis sativus L. HOM05D003020 ORTHO05D003226 1.2e-17 94.7 303 30.0
Medtr4g128160 Medicago truncatula HOM05D003020 ORTHO05D003226 1.2e-17 94.7 287 32.8
Dinv42724 Davidia involucrata HOM05D003020 ORTHO05D003226 1.6e-17 94.4 300 34.0
Dinv43377 Davidia involucrata HOM05D003020 ORTHO05D003226 1.6e-17 94.4 300 34.0
TAR625G0330 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.6e-17 94.4 314 32.5
Atru.chr7.633 Acer truncatum HOM05D003020 ORTHO05D003226 3.5e-17 93.2 185 38.9
TPR.G5404 Trifolium pratense HOM05D003020 ORTHO05D003226 3.5e-17 93.2 301 30.9
MSTRG.6214 Avicennia marina HOM05D003020 ORTHO05D003226 6.0e-17 92.4 253 34.0
Thecc.09G173200 Theobroma cacao HOM05D003020 ORTHO05D003226 6.0e-17 92.4 293 30.4
Aqoxy7G03070 Aquilegia oxysepala HOM05D003020 ORTHO05D003226 3.0e-16 90.1 277 29.6
SalBow6G2220 Salvia bowleyana HOM05D003020 ORTHO05D003226 3.0e-16 90.1 294 32.3
Sed0018084 Sechium edule HOM05D003020 ORTHO05D003226 3.9e-16 89.7 279 30.8
Gohir.A08G084400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 5.1e-16 89.4 307 30.3
Potri.018G092800 Populus trichocarpa HOM05D003020 ORTHO05D003226 5.1e-16 89.4 311 34.4
Phvul.003G146000 Phaseolus vulgaris HOM05D003020 ORTHO05D003226 6.6e-16 89.0 284 31.7
Aa31LG2G20290 Aethionema arabicum HOM05D003020 ORTHO05D003226 8.7e-16 88.6 272 32.4
Carub.0007s1038 Capsella rubella HOM05D003020 ORTHO05D003226 1.1e-15 88.2 282 30.1
Manes.14G153400 Manihot esculenta HOM05D003020 ORTHO05D003226 1.1e-15 88.2 258 33.7
Gohir.D08G094000 Gossypium hirsutum HOM05D003020 ORTHO05D003226 1.5e-15 87.8 311 30.9
Sp7g28110 Schrenkiella parvula HOM05D003020 ORTHO05D003226 9.6e-15 85.1 277 30.3
Duzib170G0355 Durio zibethinus HOM05D003020 ORTHO05D003226 1.3e-14 84.7 305 28.9
Gorai.004G031500 Gossypium raimondii HOM05D003020 ORTHO05D003226 2.8e-14 83.6 293 30.0
Duzib150G1089 Durio zibethinus HOM05D003020 ORTHO05D003226 3.6e-14 83.2 312 28.8
TAR383G0860 Trochodendron aralioides HOM05D003020 ORTHO05D003226 3.6e-14 83.2 281 30.2
AT4G30230 Arabidopsis thaliana HOM05D003020 ORTHO05D003226 8.1e-14 82.0 278 29.1
Gohir.D08G033900 Gossypium hirsutum HOM05D003020 ORTHO05D003226 8.1e-14 82.0 293 30.4
AL7G21920 Arabidopsis lyrata HOM05D003020 ORTHO05D003226 1.4e-13 81.3 283 28.6
Eucgr.C00156 Eucalyptus grandis HOM05D003020 ORTHO05D003226 3.1e-13 80.1 280 28.6
TAR383G0645 Trochodendron aralioides HOM05D003020 ORTHO05D003226 5.3e-13 79.3 301 31.6
Oeu025224.1 Olea europaea HOM05D003020 ORTHO05D003226 9.0e-13 78.6 288 28.1
TAR383G0698 Trochodendron aralioides HOM05D003020 ORTHO05D003226 2.6e-12 77.0 311 31.8
A01p07910 Brassica napus HOM05D003020 ORTHO05D003226 3.4e-12 76.6 246 29.3
BraA01t00737Z Brassica rapa HOM05D003020 ORTHO05D003226 3.4e-12 76.6 246 29.3
THA.LOC104803497 Tarenaya hassleriana HOM05D003020 ORTHO05D003226 3.4e-12 76.6 290 30.0
Lalb_Chr07g0180461 Lupinus albus HOM05D003020 ORTHO05D003226 5.8e-12 75.9 292 29.5
Ciclev10010534m.g Citrus clementina HOM05D003020 ORTHO05D003226 7.6e-12 75.5 297 27.9
Gohir.A08G023400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 7.6e-12 75.5 289 29.1
BcaNung03008 Brassica carinata HOM05D003020 ORTHO05D003226 9.9e-12 75.1 286 28.7
Thhalv10026023m.g Eutrema salsugineum HOM05D003020 ORTHO05D003226 1.3e-11 74.7 288 27.1
MBI16_g41356_MAGBIO Magnolia biondii HOM05D003020 ORTHO05D003226 3.8e-11 73.2 246 26.8
Sabra18G0080000 Salix brachista HOM05D003020 ORTHO05D003226 4.9e-11 72.8 162 35.8
Nn2g12774 Nelumbo nucifera HOM05D003020 ORTHO05D003226 6.4e-11 72.4 292 27.1
Sabra06G0129900 Salix brachista HOM05D003020 ORTHO05D003226 1.1e-10 71.6 232 34.1
MBI16_g42581_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D003226 1.9e-10 70.9 246 26.0
CARHR238140 Cardamine hirsuta HOM05D003020 ORTHO05D003226 2.4e-10 70.5 148 35.1
A03p59690 Brassica napus HOM05D003020 ORTHO05D003226 3.2e-10 70.1 289 27.7
BraA03t15021Z Brassica rapa HOM05D003020 ORTHO05D003226 4.2e-10 69.7 293 28.3
PSO170G3450 Papaver somniferum HOM05D003020 ORTHO05D003226 5.4e-10 69.3 315 30.2
BcaC09g51805 Brassica carinata HOM05D003020 ORTHO05D003226 7.1e-10 68.9 285 26.7
C01p08830 Brassica napus HOM05D003020 ORTHO05D003226 7.1e-10 68.9 285 26.7
BolC1t00873H Brassica oleracea HOM05D003020 ORTHO05D003226 7.1e-10 68.9 285 26.7
THA.LOC104819978 Tarenaya hassleriana HOM05D003020 ORTHO05D003226 9.3e-10 68.6 291 29.6
Ah.09g229890 Amaranthus hybridus HOM05D003020 ORTHO05D003226 1.6e-09 67.8 158 36.7
QL08p056680 Quercus lobata HOM05D003020 ORTHO05D003226 2.1e-09 67.4 283 26.9
Migut.K00242 Erythranthe guttata HOM05D003020 ORTHO05D003226 3.5e-09 66.6 298 26.2
C07p57710 Brassica napus HOM05D003020 ORTHO05D003226 4.6e-09 66.2 281 28.1
BolC7t46232H Brassica oleracea HOM05D003020 ORTHO05D003226 4.6e-09 66.2 281 28.1
TWI63G1498 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 4.6e-09 66.2 300 26.3
Gorai.004G099800 Gossypium raimondii HOM05D003020 ORTHO05D003226 6.0e-09 65.9 155 34.8
TAR636G2901 Trochodendron aralioides HOM05D003020 ORTHO05D003226 6.0e-09 65.9 304 29.9
FAN10G0626 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.0e-08 65.1 285 27.0
FvH4_7g20060 Fragaria vesca HOM05D003020 ORTHO05D003226 1.3e-08 64.7 280 30.7
FvH4_7g20070 Fragaria vesca HOM05D003020 ORTHO05D003226 1.3e-08 64.7 292 26.4
AUR62033218 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.8e-08 64.3 127 36.2
FAN03G1700 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.8e-08 64.3 285 27.0
FAN06G2932 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.3e-08 63.9 280 30.4
AUR62021300 Chenopodium quinoa HOM05D003020 ORTHO05D003226 3.0e-08 63.5 148 35.8
Cc02_g11380 Coffea canephora HOM05D003020 ORTHO05D003226 5.1e-08 62.8 302 25.2
Eucgr.C02308 Eucalyptus grandis HOM05D003020 ORTHO05D003226 5.1e-08 62.8 159 34.6
FAN06G0496 Fragaria x ananassa HOM05D003020 ORTHO05D003226 8.7e-08 62.0 292 26.7
CiPaw.07G071600 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.9e-07 60.8 290 27.9
MBI14_g17368_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D000358 3.3e-07 60.1 156 35.3
Prupe.2G217400 Prunus persica HOM05D003020 ORTHO05D003226 3.3e-07 60.1 284 25.0
RcHm_v2.0_Chr1g0364021 Rosa chinensis HOM05D003020 ORTHO05D003226 3.3e-07 60.1 293 25.9
Cfa001601 Carpinus fangiana HOM05D003020 ORTHO05D003226 1.3e-06 58.2 278 25.2
CiPaw.02G176000 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.3e-06 58.2 288 28.5
Nitab4.5_0000534g0060 Nicotiana tabacum HOM05D003020 ORTHO05D003226 1.3e-06 58.2 272 25.7
TAR626G0085 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.6e-06 57.8 285 27.4
FAN01G0050 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.1e-06 57.4 280 30.0
FAN01G2565 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.1e-06 57.4 280 30.0
Haze_16927 Corylus avellana HOM05D003020 ORTHO05D003226 2.8e-06 57.0 268 25.7


User provided reference genes

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