Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 5.8e-98 360.9 187 100.0
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 1.7e-81 306.2 188 87.2
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 1.0e-78 297.0 187 84.5
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 6.3e-76 287.7 200 80.5
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 5.7e-61 238.0 195 67.2
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 2.2e-60 236.1 195 66.2
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 1.1e-59 233.8 190 70.0
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 1.2e-58 230.3 190 69.5
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 1.6e-58 229.9 190 69.5
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 3.5e-58 228.8 194 67.0
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 3.5e-58 228.8 198 66.7
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 4.5e-58 228.4 192 67.2
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 1.0e-57 227.3 195 64.6
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 1.0e-57 227.3 190 68.4
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 1.7e-57 226.5 198 68.2
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 1.7e-57 226.5 197 66.0
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 2.2e-57 226.1 195 65.1
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 2.2e-57 226.1 169 74.6
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 2.2e-57 226.1 169 73.4
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 2.2e-57 226.1 169 73.4
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 5.0e-57 224.9 196 66.8
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 6.5e-57 224.6 171 70.8
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 1.1e-56 223.8 168 72.6
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 1.1e-56 223.8 198 66.7
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.5e-56 223.4 177 70.6
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 1.5e-56 223.4 177 70.1
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 1.5e-56 223.4 188 69.1
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.5e-56 223.4 198 63.1
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 1.5e-56 223.4 192 66.1
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 1.9e-56 223.0 194 66.5
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.9e-56 223.0 195 63.1
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 1.9e-56 223.0 195 63.1
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 1.9e-56 223.0 198 66.2
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 2.5e-56 222.6 204 64.7
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 3.2e-56 222.2 169 71.6
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 3.2e-56 222.2 168 72.6
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 5.5e-56 221.5 195 65.1
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 7.2e-56 221.1 188 67.0
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 9.4e-56 220.7 185 64.3
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 1.2e-55 220.3 172 69.8
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 1.6e-55 219.9 141 83.0
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 1.6e-55 219.9 177 69.5
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.6e-55 219.9 190 65.8
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 2.1e-55 219.5 189 67.7
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 2.1e-55 219.5 188 66.0
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.1e-55 219.5 188 66.5
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 2.7e-55 219.2 138 82.6
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 2.7e-55 219.2 143 79.7
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 2.7e-55 219.2 161 75.8
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 2.7e-55 219.2 194 66.0
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 3.6e-55 218.8 189 67.7
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 4.7e-55 218.4 187 66.8
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 4.7e-55 218.4 194 66.5
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 4.7e-55 218.4 188 66.0
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 6.1e-55 218.0 188 66.0
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 8.0e-55 217.6 188 64.4
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 8.0e-55 217.6 172 69.2
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 8.0e-55 217.6 185 67.0
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.0e-54 217.2 198 64.6
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 1.0e-54 217.2 198 64.6
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.4e-54 216.9 189 67.2
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.4e-54 216.9 139 81.3
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 1.8e-54 216.5 189 66.7
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 2.3e-54 216.1 181 65.2
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 2.3e-54 216.1 180 65.6
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 2.3e-54 216.1 163 70.6
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 4.0e-54 215.3 189 65.6
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 4.0e-54 215.3 137 81.8
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 4.0e-54 215.3 190 64.7
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 5.2e-54 214.9 164 72.0
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 5.2e-54 214.9 188 66.5
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 5.2e-54 214.9 139 81.3
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 5.2e-54 214.9 189 64.6
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 5.2e-54 214.9 192 67.2
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 6.8e-54 214.5 139 82.0
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 6.8e-54 214.5 169 71.6
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 8.8e-54 214.2 133 83.5
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.5e-53 213.4 194 63.4
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 2.6e-53 212.6 136 81.6
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 2.6e-53 212.6 163 71.8
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 3.4e-53 212.2 200 64.5
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 3.4e-53 212.2 137 81.0
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 3.4e-53 212.2 142 78.2
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 4.4e-53 211.8 193 66.3
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 4.4e-53 211.8 140 78.6
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 4.4e-53 211.8 192 65.6
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 5.7e-53 211.5 189 65.6
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 9.8e-53 210.7 195 62.6
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 1.3e-52 210.3 165 69.7
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 1.7e-52 209.9 141 78.7
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 1.7e-52 209.9 141 78.7
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 1.7e-52 209.9 196 65.3
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 1.7e-52 209.9 141 78.7
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 1.7e-52 209.9 141 78.7
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 2.2e-52 209.5 140 78.6
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 2.2e-52 209.5 157 72.0
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 3.7e-52 208.8 137 80.3
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 4.8e-52 208.4 200 62.0
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 8.3e-52 207.6 173 69.4
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 8.3e-52 207.6 197 61.4
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 1.1e-51 207.2 196 59.7
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.4e-51 206.8 134 82.1
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.8e-51 206.5 138 76.8
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 2.4e-51 206.1 137 77.4
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 2.4e-51 206.1 140 80.7
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 2.4e-51 206.1 148 75.7
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 2.4e-51 206.1 197 62.9
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 2.4e-51 206.1 140 76.4
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 2.4e-51 206.1 195 59.5
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.1e-51 205.7 194 62.9
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 3.1e-51 205.7 175 66.9
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 4.1e-51 205.3 141 77.3
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 5.4e-51 204.9 197 63.5
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.2e-50 203.8 191 63.4
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 1.6e-50 203.4 186 63.4
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 2.0e-50 203.0 142 76.8
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.7e-50 202.6 139 77.7
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 3.5e-50 202.2 114 90.4
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 4.5e-50 201.8 140 78.6
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 7.7e-50 201.1 115 88.7
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 1.7e-49 199.9 141 77.3
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 1.1e-48 197.2 197 60.9
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 3.2e-48 195.7 112 89.3
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 3.2e-48 195.7 140 75.0
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 1.6e-47 193.4 114 86.0
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 1.6e-47 193.4 114 86.0
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 2.7e-47 192.6 112 87.5
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 2.7e-47 192.6 187 61.5
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 3.6e-47 192.2 112 86.6
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 4.7e-47 191.8 195 57.9
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 8.0e-47 191.0 171 63.2
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 2.3e-46 189.5 176 61.9
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 5.2e-46 188.3 111 85.6
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 2.6e-45 186.0 145 73.1
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 1.7e-44 183.3 132 71.2
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 2.2e-44 183.0 108 88.0
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 3.1e-43 179.1 171 57.9
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 4.1e-43 178.7 189 59.3
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 4.1e-43 178.7 189 59.3
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 5.4e-43 178.3 211 56.4
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.0e-41 174.1 186 58.1
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 1.0e-41 174.1 108 79.6
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.5e-40 169.5 137 65.7
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 3.3e-40 169.1 163 56.4
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 3.0e-38 162.5 166 58.4
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 4.0e-38 162.2 133 64.7
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 2.6e-37 159.5 110 74.5
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 3.4e-37 159.1 108 74.1
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 9.8e-37 157.5 167 56.3
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 2.2e-36 156.4 115 70.4
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 1.4e-35 153.7 137 62.0
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 1.2e-34 150.6 348 35.3
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 2.0e-34 149.8 140 62.1
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 5.9e-34 148.3 102 75.5
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.2e-31 140.6 159 55.3
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 5.8e-29 131.7 111 60.4
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 7.8e-26 121.3 135 52.6
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 1.6e-23 113.6 95 66.3
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 8.1e-23 111.3 85 70.6
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 1.4e-22 110.5 86 69.8
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 2.3e-22 109.8 86 72.1
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 1.5e-21 107.1 86 70.9
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 1.5e-21 107.1 86 70.9
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.6e-21 106.3 129 53.5
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 5.8e-21 105.1 73 75.3
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 1.1e-16 90.9 85 60.0
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 2.6e-13 79.7 44 90.9
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 9.9e-13 77.8 46 82.6
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 4.9e-12 75.5 38 100.0
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 1.1e-11 74.3 49 75.5
AagrBONN_evm.TU.Sc2ySwM_344.958 Anthoceros agrestis HOM05D010958 ORTHO05D004381 3.6e-07 59.3 82 48.8
AagrBONN_evm.TU.Sc2ySwM_362.2265 Anthoceros agrestis HOM05D010958 ORTHO05D004381 4.0e-06 55.8 84 45.2


User provided reference genes

Program Settings