Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0244451 Helianthus annuus HOM05D006879 ORTHO05D008452 1.3e-51 206.1 98 100.0
HanXRQChr03g0088981 Helianthus annuus HOM05D006879 ORTHO05D008452 1.5e-15 86.3 61 72.1
Lsat_1_v5_gn_6_93360 Lactuca sativa HOM05D006879 ORTHO05D008452 7.2e-15 84.0 44 88.6
Prupe.1G494800 Prunus persica HOM05D006879 ORTHO05D008452 2.1e-14 82.4 64 60.9
Aqoxy6G00233 Aquilegia oxysepala HOM05D006879 ORTHO05D008452 1.0e-13 80.1 61 60.7
arahy.Tifrunner.gnm1.ann1.0SZ2NS Arachis hypogaea HOM05D006879 ORTHO05D008452 1.4e-13 79.7 68 57.4
arahy.Tifrunner.gnm1.ann1.61DA9N Arachis hypogaea HOM05D006879 ORTHO05D008452 1.4e-13 79.7 68 57.4
arahy.Tifrunner.gnm1.ann1.GV74HV Arachis hypogaea HOM05D006879 ORTHO05D008452 1.4e-13 79.7 68 57.4
Cc10_g12010 Coffea canephora HOM05D006879 ORTHO05D008452 1.4e-13 79.7 61 63.9
QL09p034330 Quercus lobata HOM05D006879 ORTHO05D008452 1.8e-13 79.3 44 81.8
QL09p034374 Quercus lobata HOM05D006879 ORTHO05D008452 1.8e-13 79.3 44 81.8
Haze_00431 Corylus avellana HOM05D000586 ORTHO05D008452 4.0e-13 78.2 52 67.3
GSVIVG01008857001 Vitis vinifera HOM05D006879 ORTHO05D008452 4.0e-13 78.2 61 62.3
Cfa016025 Carpinus fangiana HOM05D006879 ORTHO05D008452 5.2e-13 77.8 52 65.4
AUR62014329 Chenopodium quinoa HOM05D006879 ORTHO05D008452 6.8e-13 77.4 64 59.4
FvH4_2g27080 Fragaria vesca HOM05D006879 ORTHO05D008452 6.8e-13 77.4 44 75.0
Psat5g086200 Pisum sativum HOM05D006879 ORTHO05D008452 6.8e-13 77.4 52 67.3
RcHm_v2.0_Chr6g0295961 Rosa chinensis HOM05D006879 ORTHO05D008452 6.8e-13 77.4 44 75.0
Glyma.14G151700 Glycine max HOM05D006879 ORTHO05D008452 8.8e-13 77.0 61 60.7
EL10Ac1g01022 Beta vulgaris HOM05D006879 ORTHO05D008452 1.2e-12 76.6 64 57.8
ClCG11G015720 Citrullus lanatus HOM05D006879 ORTHO05D008452 1.2e-12 76.6 49 73.5
Duzib041G0788 Durio zibethinus HOM05D006879 ORTHO05D008452 1.2e-12 76.6 44 75.0
Lalb_Chr11g0066061 Lupinus albus HOM05D006879 ORTHO05D008452 1.2e-12 76.6 64 59.4
FAN15G3590 Fragaria x ananassa HOM05D006879 ORTHO05D008452 1.5e-12 76.3 48 70.8
FAN20G0093 Fragaria x ananassa HOM05D006879 ORTHO05D008452 1.5e-12 76.3 44 75.0
Phvul.008G160300 Phaseolus vulgaris HOM05D006879 ORTHO05D008452 1.5e-12 76.3 61 60.7
TPR.G20905 Trifolium pratense HOM05D006879 ORTHO05D008452 1.5e-12 76.3 44 77.3
Ca_28182_v3 Cicer arietinum L. HOM05D006879 ORTHO05D008452 2.0e-12 75.9 44 75.0
MD15G1347100 Malus domestica HOM05D006879 ORTHO05D008452 2.0e-12 75.9 44 79.5
Sc02g0005010 Simmondsia chinensis HOM05D006879 ORTHO05D008452 2.0e-12 75.9 64 56.2
COL.COLO4_03398 Corchorus olitorius HOM05D006879 ORTHO05D008452 2.6e-12 75.5 44 75.0
FAN24G0949 Fragaria x ananassa HOM05D006879 ORTHO05D008452 2.6e-12 75.5 44 72.7
VMungo0647G0471 Vigna mungo HOM05D006879 ORTHO05D008452 2.6e-12 75.5 61 60.7
Atru.chr13.1490 Acer truncatum HOM05D006879 ORTHO05D008452 3.4e-12 75.1 61 55.7
CiPaw.06G031600 Carya illinoinensis HOM05D006879 ORTHO05D008452 3.4e-12 75.1 61 55.7
Gohir.D01G180300 Gossypium hirsutum HOM05D006879 ORTHO05D008452 3.4e-12 75.1 52 65.4
Hma1.2p1_0054F.1_g031040 Hydrangea macrophylla HOM05D006879 ORTHO05D008452 3.4e-12 75.1 44 75.0
Thecc.08G126700 Theobroma cacao HOM05D006879 ORTHO05D008452 3.4e-12 75.1 44 72.7
Cpa.g.sc418.6 Carica papaya HOM05D006879 ORTHO05D008452 4.4e-12 74.7 44 70.5
Ciclev10002899m.g Citrus clementina HOM05D006879 ORTHO05D008452 4.4e-12 74.7 61 57.4
CsaV3_4G028290 Cucumis sativus L. HOM05D006879 ORTHO05D008452 4.4e-12 74.7 44 77.3
Lj1g0005641 Lotus japonicus HOM05D006879 ORTHO05D008452 4.4e-12 74.7 44 77.3
Medtr3g088570 Medicago truncatula HOM05D006879 ORTHO05D008452 4.4e-12 74.7 44 75.0
Oeu059437.1 Olea europaea HOM05D006879 ORTHO05D008452 4.4e-12 74.7 61 59.0
CAN.G21.5 Capsicum annuum HOM05D006879 ORTHO05D008452 5.7e-12 74.3 61 60.7
MELO3C010476.2 Cucumis melo HOM05D006879 ORTHO05D008452 5.7e-12 74.3 44 77.3
ECA240G3722 Erigeron canadensis HOM05D006879 ORTHO05D008452 5.7e-12 74.3 44 81.8
Eucgr.F03793 Eucalyptus grandis HOM05D006879 ORTHO05D008452 5.7e-12 74.3 61 55.7
Gohir.A01G189200 Gossypium hirsutum HOM05D006879 ORTHO05D008452 7.5e-12 73.9 52 63.5
Potri.005G178501 Populus trichocarpa HOM05D006879 ORTHO05D008452 7.5e-12 73.9 63 52.4
Hund17297 Selenicereus undatus HOM05D006879 ORTHO05D008452 7.5e-12 73.9 44 75.0
Solyc08g067800.3 Solanum lycopersicum HOM05D006879 ORTHO05D008452 7.5e-12 73.9 61 57.4
Sopen08g021740 Solanum pennellii HOM05D006879 ORTHO05D008452 7.5e-12 73.9 61 57.4
Carub.0002s2444 Capsella rubella HOM05D006879 ORTHO05D008452 9.8e-12 73.6 61 57.4
Dinv27305 Davidia involucrata HOM05D006879 ORTHO05D008452 9.8e-12 73.6 61 57.4
TWI32G0821 Tripterygium wilfordii HOM05D006879 ORTHO05D008452 9.8e-12 73.6 64 57.8
Nn5g28321 Nelumbo nucifera HOM05D006879 ORTHO05D008452 1.3e-11 73.2 61 59.0
Nitab4.5_0004334g0040 Nicotiana tabacum HOM05D006879 ORTHO05D008452 1.3e-11 73.2 61 59.0
Nitab4.5_0005583g0080 Nicotiana tabacum HOM05D006879 ORTHO05D008452 1.3e-11 73.2 61 59.0
CDE07G0981 Ceratophyllum demersum HOM05D006879 ORTHO05D008452 1.7e-11 72.8 66 53.0
Dinv07211 Davidia involucrata HOM05D006879 ORTHO05D008452 1.7e-11 72.8 61 55.7
Sed0023358 Sechium edule HOM05D006879 ORTHO05D008452 1.7e-11 72.8 44 72.7
TAR628G0734 Trochodendron aralioides HOM05D006879 ORTHO05D008452 1.7e-11 72.8 64 53.1
Actinidia03466 Actinidia chinensis HOM05D006879 ORTHO05D008452 2.2e-11 72.4 61 55.7
AL2G37750 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 2.2e-11 72.4 44 70.5
CSS0011792 Camellia sinensis var. sinensis HOM05D006879 ORTHO05D008452 2.2e-11 72.4 44 70.5
CANSAT56G2034 Cannabis sativa HOM05D006879 ORTHO05D008452 2.2e-11 72.4 61 55.7
Thhalv10019334m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 2.2e-11 72.4 44 70.5
Gorai.002G222300 Gossypium raimondii HOM05D006879 ORTHO05D008452 2.2e-11 72.4 52 63.5
AUR62019072 Chenopodium quinoa HOM05D006879 ORTHO05D008452 2.8e-11 72.0 64 54.7
Manes.02G164300 Manihot esculenta HOM05D006879 ORTHO05D008452 2.8e-11 72.0 61 50.8
Sp5g32720 Schrenkiella parvula HOM05D006879 ORTHO05D008452 2.8e-11 72.0 44 68.2
ATR0584G146 Amborella trichopoda HOM05D006879 ORTHO05D008452 4.8e-11 71.2 44 68.2
Aa31LG4G7630 Aethionema arabicum HOM05D006879 ORTHO05D008452 6.3e-11 70.9 61 50.8
PSO528G0112 Papaver somniferum HOM05D006879 ORTHO05D008452 1.1e-10 70.1 64 54.7
RhsimUnG0092300 Rhododendron simsii HOM05D000586 ORTHO05D008452 1.1e-10 70.1 48 62.5
vmacro00838 Vaccinium macrocarpon HOM05D006879 ORTHO05D008452 1.1e-10 70.1 44 70.5
AT1G77540 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 1.4e-10 69.7 44 65.9
Ah.05g171050 Amaranthus hybridus HOM05D006879 ORTHO05D008452 1.8e-10 69.3 45 68.9
BcaB02g07111 Brassica carinata HOM05D006879 ORTHO05D008452 2.4e-10 68.9 44 70.5
C06p31190 Brassica napus HOM05D006879 ORTHO05D008452 2.4e-10 68.9 44 70.5
PSO170G0506 Papaver somniferum HOM05D006879 ORTHO05D008452 2.4e-10 68.9 64 56.2
BcaC08g45472 Brassica carinata HOM05D006879 ORTHO05D008452 3.1e-10 68.6 44 68.2
A07p27940 Brassica napus HOM05D006879 ORTHO05D008452 3.1e-10 68.6 44 68.2
BolC6t38260H Brassica oleracea HOM05D006879 ORTHO05D008452 3.1e-10 68.6 44 68.2
BraA07t30441Z Brassica rapa HOM05D006879 ORTHO05D008452 3.1e-10 68.6 44 68.2
MSTRG.25382 Avicennia marina HOM05D006879 ORTHO05D008452 4.1e-10 68.2 61 55.7
BcaB07g32176 Brassica carinata HOM05D006879 ORTHO05D008452 4.1e-10 68.2 70 47.1
PGR083G2398 Punica granatum HOM05D006879 ORTHO05D008452 4.1e-10 68.2 61 55.7
SGA_v2.0_scaffold52G18964 Striga asiatica HOM05D006879 ORTHO05D008452 4.1e-10 68.2 52 61.5
THA.LOC104813659 Tarenaya hassleriana HOM05D006879 ORTHO05D008452 5.4e-10 67.8 61 52.5
AT1G21770 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 7.0e-10 67.4 67 49.3
Migut.C01128 Erythranthe guttata HOM05D006879 ORTHO05D008452 9.1e-10 67.0 61 52.5
BcaC05g26099 Brassica carinata HOM05D006879 ORTHO05D008452 1.2e-09 66.6 44 63.6
Thhalv10009164m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 1.2e-09 66.6 44 63.6
A06p17880 Brassica napus HOM05D006879 ORTHO05D008452 1.6e-09 66.2 44 63.6
C05p20780 Brassica napus HOM05D006879 ORTHO05D008452 1.6e-09 66.2 44 63.6
BolC5t30777H Brassica oleracea HOM05D006879 ORTHO05D008452 1.6e-09 66.2 44 63.6
BraA06t24878Z Brassica rapa HOM05D006879 ORTHO05D008452 1.6e-09 66.2 44 63.6
SEGI_19819 Sequoiadendron giganteum HOM05D006879 ORTHO05D008452 2.7e-09 65.5 44 63.6
AL1G34970 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 3.5e-09 65.1 44 63.6
CARHR071070 Cardamine hirsuta HOM05D006879 ORTHO05D008452 3.5e-09 65.1 44 65.9
Aa31LG7G5750 Aethionema arabicum HOM05D006879 ORTHO05D008452 4.5e-09 64.7 61 47.5
Carub.0001s2123 Capsella rubella HOM05D006879 ORTHO05D008452 1.3e-08 63.2 61 47.5
Sp1g19330 Schrenkiella parvula HOM05D006879 ORTHO05D008452 2.2e-08 62.4 44 61.4
Pp3c12_9490 Physcomitrium patens HOM05D006879 ORTHO05D008452 6.5e-08 60.8 44 63.6
HanXRQChr04g0101301 Helianthus annuus HOM05D006879 ORTHO05D008452 8.5e-08 60.5 30 93.3
Zm00001eb082730 Zea mays HOM05D006879 ORTHO05D008452 1.9e-07 59.3 44 59.1
HanXRQChr01g0005251 Helianthus annuus HOM05D006879 ORTHO05D008452 2.5e-07 58.9 31 87.1
Peaxi162Scf00332g00015 Petunia axillaris HOM05D006879 ORTHO05D008452 1.6e-06 56.2 34 76.5
CAN.G21.4 Capsicum annuum HOM05D006879 ORTHO05D008452 3.6e-06 55.1 52 44.2
Os04g0431300 Oryza sativa ssp. japonica HOM05D006879 ORTHO05D008452 6.1e-06 54.3 44 54.5


User provided reference genes

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