Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 5.8e-112 407.5 200 100.0
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 8.9e-44 181.0 116 77.6
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 2.2e-42 176.4 132 68.2
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 3.4e-35 152.5 118 67.8
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 7.0e-33 144.8 117 68.4
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 1.2e-32 144.1 118 61.0
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 1.6e-32 143.7 132 56.8
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 6.0e-32 141.7 117 65.0
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 7.8e-32 141.4 113 64.6
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 7.8e-32 141.4 113 64.6
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 1.7e-31 140.2 117 64.1
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 1.7e-31 140.2 115 61.7
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 3.0e-31 139.4 120 60.8
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 3.0e-31 139.4 123 60.2
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 3.0e-31 139.4 157 51.6
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 3.9e-31 139.0 112 64.3
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 3.9e-31 139.0 115 64.3
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 3.9e-31 139.0 115 64.3
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 3.9e-31 139.0 128 58.6
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 3.9e-31 139.0 116 64.7
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 5.0e-31 138.7 122 60.7
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 5.0e-31 138.7 123 59.3
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 8.6e-31 137.9 122 59.8
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 1.1e-30 137.5 113 62.8
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 1.1e-30 137.5 113 62.8
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 1.1e-30 137.5 113 62.8
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 1.1e-30 137.5 113 62.8
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 1.9e-30 136.7 115 60.9
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 1.9e-30 136.7 127 58.3
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 1.9e-30 136.7 115 59.1
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 1.9e-30 136.7 128 60.2
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 2.5e-30 136.3 109 66.1
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 3.3e-30 136.0 116 62.1
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 3.3e-30 136.0 116 62.9
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 4.3e-30 135.6 127 58.3
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 5.6e-30 135.2 129 58.9
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 5.6e-30 135.2 127 59.1
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 5.6e-30 135.2 124 60.5
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 1.2e-29 134.0 116 62.1
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.2e-29 134.0 126 59.5
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 2.8e-29 132.9 117 61.5
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 3.6e-29 132.5 113 61.9
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 6.2e-29 131.7 121 57.0
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 8.0e-29 131.3 112 61.6
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.1e-28 131.0 151 50.3
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 1.1e-28 131.0 117 60.7
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 1.4e-28 130.6 119 59.7
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 1.4e-28 130.6 117 59.0
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 1.4e-28 130.6 119 58.8
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.4e-28 130.6 117 61.5
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 1.8e-28 130.2 116 61.2
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 2.3e-28 129.8 125 56.8
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 3.1e-28 129.4 123 57.7
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 6.8e-28 128.3 123 56.1
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 6.8e-28 128.3 115 60.0
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 8.9e-28 127.9 116 60.3
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 8.9e-28 127.9 112 60.7
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 8.9e-28 127.9 122 59.8
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 8.9e-28 127.9 114 57.9
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 1.2e-27 127.5 124 61.3
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 1.2e-27 127.5 111 60.4
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 1.5e-27 127.1 133 56.4
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 1.5e-27 127.1 134 50.7
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.0e-27 126.7 123 59.3
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 3.4e-27 125.9 123 59.3
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 4.4e-27 125.6 130 55.4
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 4.4e-27 125.6 131 51.1
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 4.4e-27 125.6 111 59.5
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 5.8e-27 125.2 134 54.5
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 5.8e-27 125.2 127 54.3
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 9.8e-27 124.4 114 55.3
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 9.8e-27 124.4 117 59.0
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 9.8e-27 124.4 120 59.2
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.3e-26 124.0 123 58.5
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 1.3e-26 124.0 122 56.6
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 1.3e-26 124.0 126 57.1
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.7e-26 123.6 124 57.3
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 1.7e-26 123.6 117 59.0
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 2.2e-26 123.2 126 54.8
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 2.2e-26 123.2 116 61.2
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 2.9e-26 122.9 117 58.1
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 3.7e-26 122.5 114 57.0
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 3.7e-26 122.5 116 55.2
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 3.7e-26 122.5 120 58.3
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 3.7e-26 122.5 109 57.8
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 4.9e-26 122.1 127 52.0
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 4.9e-26 122.1 130 53.1
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 4.9e-26 122.1 131 54.2
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 1.1e-25 120.9 120 55.8
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 1.1e-25 120.9 125 52.8
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 3.2e-25 119.4 140 51.4
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 3.2e-25 119.4 146 48.6
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 4.1e-25 119.0 116 54.3
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 4.1e-25 119.0 134 50.0
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 5.4e-25 118.6 130 54.6
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 5.4e-25 118.6 116 56.9
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 7.0e-25 118.2 122 51.6
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.2e-24 117.5 115 53.0
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 1.2e-24 117.5 122 54.1
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 1.2e-24 117.5 117 53.8
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.7e-24 116.3 116 54.3
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 2.7e-24 116.3 122 54.9
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 3.5e-24 115.9 132 50.0
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 3.5e-24 115.9 140 50.0
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 3.5e-24 115.9 119 54.6
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 7.8e-24 114.8 163 41.7
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 1.0e-23 114.4 121 52.1
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 1.3e-23 114.0 163 41.1
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 1.3e-23 114.0 120 51.7
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.3e-23 113.2 135 50.4
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 2.3e-23 113.2 133 48.9
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 3.0e-23 112.8 118 54.2
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.0e-23 112.8 130 53.1
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 3.0e-23 112.8 122 51.6
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 5.0e-23 112.1 108 54.6
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 6.6e-23 111.7 127 52.8
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 1.1e-22 110.9 127 49.6
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 1.5e-22 110.5 104 59.6
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 2.5e-22 109.8 129 49.6
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 2.5e-22 109.8 127 52.8
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 2.5e-22 109.8 110 50.9
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 4.3e-22 109.0 129 51.9
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 4.3e-22 109.0 113 53.1
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 7.3e-22 108.2 87 59.8
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 7.3e-22 108.2 162 43.8
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 3.6e-21 105.9 127 46.5
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 6.2e-21 105.1 123 51.2
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 8.1e-21 104.8 119 47.9
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 8.1e-21 104.8 129 48.1
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 1.1e-20 104.4 111 48.6
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 1.4e-20 104.0 113 49.6
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 8.9e-20 101.3 144 43.8
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.4e-19 99.4 144 43.1
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.4e-19 99.4 144 43.1
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 4.4e-19 99.0 155 41.3
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 4.4e-19 99.0 110 50.0
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 4.4e-19 99.0 137 45.3
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 5.8e-19 98.6 157 42.0
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 4.9e-18 95.5 95 50.5
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 1.9e-17 93.6 157 40.1
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 3.2e-17 92.8 125 45.6
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 5.4e-17 92.0 89 57.3
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 2.1e-16 90.1 152 40.8
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 2.7e-16 89.7 90 46.7
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 2.7e-16 89.7 147 42.9
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 1.0e-15 87.8 148 39.9
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 5.1e-15 85.5 61 62.3
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 6.6e-15 85.1 99 52.5
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 8.1e-13 78.2 101 44.6
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 9.9e-11 71.2 97 44.3
AUR62021312 Chenopodium quinoa HOM05D004757 ORTHO05D005743 2.2e-10 70.1 91 46.2
AUR62033229 Chenopodium quinoa HOM05D004757 ORTHO05D005743 2.2e-10 70.1 75 50.7
Nitab4.5_0000957g0030 Nicotiana tabacum HOM05D004757 ORTHO05D005743 9.6e-06 54.7 95 40.0


User provided reference genes

Program Settings