Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0243671 Helianthus annuus HOM05D004313 ORTHO05D005036 2.1e-39 165.2 85 100.0
HanXRQChr04g0111761 Helianthus annuus HOM05D004313 ORTHO05D005036 1.2e-21 106.3 84 71.4
HanXRQChr12g0381491 Helianthus annuus HOM05D004313 ORTHO05D005036 1.2e-21 106.3 84 71.4
Lsat_1_v5_gn_4_106321 Lactuca sativa HOM05D004313 ORTHO05D005036 1.1e-11 73.2 79 55.7
ECA232G1058 Erigeron canadensis HOM05D004313 ORTHO05D005036 1.4e-11 72.8 79 55.7
HanXRQChr15g0485871 Helianthus annuus HOM05D004313 ORTHO05D005036 2.5e-11 72.0 67 64.2
HanXRQChr09g0271451 Helianthus annuus HOM05D004313 ORTHO05D005036 4.2e-11 71.2 79 54.4
Cc04_g16080 Coffea canephora HOM05D004313 ORTHO05D005036 5.5e-11 70.9 79 54.4
MELO3C017136.2 Cucumis melo HOM05D004313 ORTHO05D005036 5.5e-11 70.9 79 55.7
CsaV3_1G001930 Cucumis sativus L. HOM05D004313 ORTHO05D005036 5.5e-11 70.9 79 55.7
ClCG06G016580 Citrullus lanatus HOM05D004313 ORTHO05D005036 7.2e-11 70.5 80 55.0
arahy.Tifrunner.gnm1.ann1.PL6DWX Arachis hypogaea HOM05D004313 ORTHO05D005036 9.4e-11 70.1 79 54.4
arahy.Tifrunner.gnm1.ann1.ZX441X Arachis hypogaea HOM05D004313 ORTHO05D005036 9.4e-11 70.1 79 54.4
Lalb_Chr07g0182441 Lupinus albus HOM05D004313 ORTHO05D005036 9.4e-11 70.1 79 54.4
Phvul.003G195400 Phaseolus vulgaris HOM05D004313 ORTHO05D005036 9.4e-11 70.1 79 54.4
VMungo1215G1877 Vigna mungo HOM05D004313 ORTHO05D005036 9.4e-11 70.1 79 54.4
Nitab4.5_0000758g0080 Nicotiana tabacum HOM05D004313 ORTHO05D005036 1.6e-10 69.3 79 51.9
CANSAT80G2445 Cannabis sativa HOM05D004313 ORTHO05D005036 2.1e-10 68.9 79 54.4
Glyma.17G094800 Glycine max HOM05D004313 ORTHO05D005036 2.1e-10 68.9 79 54.4
Sed0007676 Sechium edule HOM05D004313 ORTHO05D005036 2.1e-10 68.9 79 54.4
MD06G1183500 Malus domestica HOM05D004313 ORTHO05D005036 2.7e-10 68.6 79 53.2
Glyma.05G031900 Glycine max HOM05D004313 ORTHO05D005036 3.6e-10 68.2 79 53.2
Nitab4.5_0000003g0130 Nicotiana tabacum HOM05D004313 ORTHO05D005036 3.6e-10 68.2 79 50.6
TAR374G1555 Trochodendron aralioides HOM05D004313 ORTHO05D005036 3.6e-10 68.2 81 53.1
Ca_21869_v3 Cicer arietinum L. HOM05D004313 ORTHO05D005036 4.6e-10 67.8 79 51.9
FvH4_5g16030 Fragaria vesca HOM05D004313 ORTHO05D005036 4.6e-10 67.8 79 53.2
FAN04G0114 Fragaria x ananassa HOM05D004313 ORTHO05D005036 4.6e-10 67.8 79 53.2
FAN08G2034 Fragaria x ananassa HOM05D004313 ORTHO05D005036 4.6e-10 67.8 79 53.2
FAN13G2316 Fragaria x ananassa HOM05D004313 ORTHO05D005036 4.6e-10 67.8 79 53.2
FAN18G3297 Fragaria x ananassa HOM05D004313 ORTHO05D005036 4.6e-10 67.8 79 53.2
RcHm_v2.0_Chr7g0180041 Rosa chinensis HOM05D004313 ORTHO05D005036 4.6e-10 67.8 79 53.2
Gohir.A07G071100 Gossypium hirsutum HOM05D004313 ORTHO05D005036 6.1e-10 67.4 79 53.2
Gohir.D07G075600 Gossypium hirsutum HOM05D004313 ORTHO05D005036 6.1e-10 67.4 79 53.2
Gorai.001G079800 Gossypium raimondii HOM05D004313 ORTHO05D005036 6.1e-10 67.4 79 53.2
Lj9A456G24 Lonicera japonica HOM05D004313 ORTHO05D005036 6.1e-10 67.4 79 51.9
Lj4g0005973 Lotus japonicus HOM05D004313 ORTHO05D005036 6.1e-10 67.4 73 57.5
TAR629G1960 Trochodendron aralioides HOM05D004313 ORTHO05D005036 6.1e-10 67.4 79 53.2
GSVIVG01007840001 Vitis vinifera HOM05D004313 ORTHO05D005036 6.1e-10 67.4 79 53.2
MD14G1189400 Malus domestica HOM05D004313 ORTHO05D005036 7.9e-10 67.0 79 51.9
Peaxi162Scf00689g00546 Petunia axillaris HOM05D004313 ORTHO05D005036 7.9e-10 67.0 79 49.4
Potri.015G068600 Populus trichocarpa HOM05D004313 ORTHO05D005036 7.9e-10 67.0 73 57.5
Thecc.03G071100 Theobroma cacao HOM05D004313 ORTHO05D005036 7.9e-10 67.0 79 53.2
Dinv13117 Davidia involucrata HOM05D004313 ORTHO05D005036 1.0e-09 66.6 79 51.9
Duzib205G0385 Durio zibethinus HOM05D004313 ORTHO05D005036 1.0e-09 66.6 79 53.2
Eucgr.B00381 Eucalyptus grandis HOM05D004313 ORTHO05D005036 1.0e-09 66.6 78 53.8
Medtr4g107290 Medicago truncatula HOM05D004313 ORTHO05D005036 1.0e-09 66.6 78 52.6
Psat4g054720 Pisum sativum HOM05D004313 ORTHO05D005036 1.0e-09 66.6 79 51.9
CSS0037121 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 1.4e-09 66.2 81 51.9
Cfa019038 Carpinus fangiana HOM05D004313 ORTHO05D005036 1.4e-09 66.2 73 57.5
DCAR_031273 Daucus carota HOM05D004313 ORTHO05D005036 1.4e-09 66.2 79 50.6
SalBow3G4066 Salvia bowleyana HOM05D004313 ORTHO05D005036 1.4e-09 66.2 73 53.4
Actinidia04946 Actinidia chinensis HOM05D004313 ORTHO05D005036 1.8e-09 65.9 79 51.9
CAN.G628.58 Capsicum annuum HOM05D004313 ORTHO05D005036 1.8e-09 65.9 79 49.4
CiPaw.12G022100 Carya illinoinensis HOM05D004313 ORTHO05D005036 1.8e-09 65.9 73 56.2
Hma1.2p1_0002F.1_g003010 Hydrangea macrophylla HOM05D004313 ORTHO05D005036 1.8e-09 65.9 79 51.9
Nn4g22972 Nelumbo nucifera HOM05D004313 ORTHO05D005036 1.8e-09 65.9 78 51.3
Rhsim08G0163500 Rhododendron simsii HOM05D004313 ORTHO05D005036 1.8e-09 65.9 83 51.8
Potri.012G073600 Populus trichocarpa HOM05D004313 ORTHO05D005036 2.3e-09 65.5 79 51.9
Atru.chr9.2370 Acer truncatum HOM05D004313 ORTHO05D005036 3.0e-09 65.1 73 54.8
Cpa.g.sc391.2 Carica papaya HOM05D004313 ORTHO05D005036 3.0e-09 65.1 79 50.6
Ciclev10018728m.g Citrus clementina HOM05D004313 ORTHO05D005036 3.0e-09 65.1 79 50.6
CSS0019418 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 3.9e-09 64.7 83 49.4
Haze_07414 Corylus avellana HOM05D004313 ORTHO05D005036 3.9e-09 64.7 79 53.2
Dinv07987 Davidia involucrata HOM05D004313 ORTHO05D005036 3.9e-09 64.7 79 51.9
Manes.06G098800 Manihot esculenta HOM05D004313 ORTHO05D005036 3.9e-09 64.7 73 56.2
Prupe.5G182200 Prunus persica HOM05D004313 ORTHO05D005036 3.9e-09 64.7 73 54.8
vmacro19341 Vaccinium macrocarpon HOM05D004313 ORTHO05D005036 3.9e-09 64.7 79 50.6
COL.COLO4_07633 Corchorus olitorius HOM05D004313 ORTHO05D005036 5.1e-09 64.3 73 54.8
TWI60G1492 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 5.1e-09 64.3 73 56.2
Actinidia37681 Actinidia chinensis HOM05D004313 ORTHO05D005036 6.7e-09 63.9 71 56.3
Oeu022185.1 Olea europaea HOM05D004313 ORTHO05D005036 6.7e-09 63.9 79 49.4
TPR.G38443 Trifolium pratense HOM05D004313 ORTHO05D005036 6.7e-09 63.9 72 55.6
CiPaw.11G034400 Carya illinoinensis HOM05D004313 ORTHO05D005036 1.1e-08 63.2 73 54.8
Solyc06g071200.3 Solanum lycopersicum HOM05D004313 ORTHO05D005036 1.1e-08 63.2 79 48.1
Sopen06g027510 Solanum pennellii HOM05D004313 ORTHO05D005036 1.1e-08 63.2 79 48.1
Duzib084G0573 Durio zibethinus HOM05D004313 ORTHO05D005036 1.9e-08 62.4 73 53.4
PSO591G0306 Papaver somniferum HOM05D004313 ORTHO05D005036 1.9e-08 62.4 73 52.1
PSO832G0682 Papaver somniferum HOM05D004313 ORTHO05D005036 1.9e-08 62.4 73 52.1
Hund09391 Selenicereus undatus HOM05D004313 ORTHO05D005036 2.5e-08 62.0 79 46.8
TWI81G0241 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 2.5e-08 62.0 79 50.6
MSTRG.4395 Avicennia marina HOM05D004313 ORTHO05D005036 3.3e-08 61.6 73 52.1
Sc12g0005870 Simmondsia chinensis HOM05D004313 ORTHO05D005036 3.3e-08 61.6 73 52.1
CARHR276380 Cardamine hirsuta HOM05D004313 ORTHO05D005036 4.3e-08 61.2 78 47.4
THA.LOC104819430 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 5.7e-08 60.8 72 52.8
QL10p014006 Quercus lobata HOM05D004313 ORTHO05D005036 9.7e-08 60.1 73 52.1
unitig_21.g20456 Utricularia gibba HOM05D004313 ORTHO05D005036 9.7e-08 60.1 73 50.7
AL8G39490 Arabidopsis lyrata HOM05D004313 ORTHO05D005036 1.3e-07 59.7 78 46.2
BcaC01g02491 Brassica carinata HOM05D004313 ORTHO05D005036 1.3e-07 59.7 78 46.2
BcaC04g23404 Brassica carinata HOM05D004313 ORTHO05D005036 1.3e-07 59.7 78 46.2
BcaNung01388 Brassica carinata HOM05D004313 ORTHO05D005036 1.3e-07 59.7 78 46.2
A06p29280 Brassica napus HOM05D004313 ORTHO05D005036 1.3e-07 59.7 78 46.2
A09p07780 Brassica napus HOM05D004313 ORTHO05D005036 1.3e-07 59.7 78 46.2
C03p64200 Brassica napus HOM05D004313 ORTHO05D005036 1.3e-07 59.7 78 46.2
C09p08680 Brassica napus HOM05D004313 ORTHO05D005036 1.3e-07 59.7 78 46.2
BolC3t18678H Brassica oleracea HOM05D004313 ORTHO05D005036 1.3e-07 59.7 78 46.2
BolC9t53779H Brassica oleracea HOM05D004313 ORTHO05D005036 1.3e-07 59.7 78 46.2
BraA06t25884Z Brassica rapa HOM05D004313 ORTHO05D005036 1.3e-07 59.7 78 46.2
BraA09t36426Z Brassica rapa HOM05D004313 ORTHO05D005036 1.3e-07 59.7 78 46.2
Carub.0008s2330 Capsella rubella HOM05D004313 ORTHO05D005036 1.3e-07 59.7 78 46.2
CDE05G2166 Ceratophyllum demersum HOM05D004313 ORTHO05D005036 1.3e-07 59.7 73 50.7
Migut.D01890 Erythranthe guttata HOM05D004313 ORTHO05D005036 1.3e-07 59.7 73 50.7
Thhalv10003602m.g Eutrema salsugineum HOM05D004313 ORTHO05D005036 1.3e-07 59.7 78 46.2
SGA_v2.0_scaffold114G31867 Striga asiatica HOM05D004313 ORTHO05D005036 1.3e-07 59.7 73 50.7
EL10Ac5g10873 Beta vulgaris HOM05D004313 ORTHO05D005036 1.7e-07 59.3 73 49.3
AUR62008311 Chenopodium quinoa HOM05D004313 ORTHO05D005036 1.7e-07 59.3 73 49.3
THA.LOC104818250 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 1.7e-07 59.3 77 49.4
SHI08465 Sapria himalayana HOM05D004313 ORTHO05D005036 2.2e-07 58.9 73 47.9
Aa31LG11G1040 Aethionema arabicum HOM05D004313 ORTHO05D005036 2.8e-07 58.5 72 51.4
MBI18_g11290_MAGBIO Magnolia biondii HOM05D004313 ORTHO05D005036 2.8e-07 58.5 73 49.3
Ah.11g045580 Amaranthus hybridus HOM05D004313 ORTHO05D005036 3.7e-07 58.2 73 47.9
Aqoxy3G03179 Aquilegia oxysepala HOM05D004313 ORTHO05D005036 3.7e-07 58.2 73 50.7
AUR62021785 Chenopodium quinoa HOM05D004313 ORTHO05D005036 6.3e-07 57.4 73 47.9
AT5G62600 Arabidopsis thaliana HOM05D004313 ORTHO05D005036 8.2e-07 57.0 72 50.0
HPP92_025605 Vanilla planifolia HOM05D004313 ORTHO05D005036 8.2e-07 57.0 73 49.3
Sp2g25780 Schrenkiella parvula HOM05D004313 ORTHO05D005036 1.1e-06 56.6 77 45.5
unitig_744.g24392 Utricularia gibba HOM05D004313 ORTHO05D005036 1.1e-06 56.6 73 47.9
Os10g0477800 Oryza sativa ssp. japonica HOM05D004313 ORTHO05D005036 4.1e-06 54.7 64 54.7
Zm00001eb045810 Zea mays HOM05D004313 ORTHO05D005036 4.1e-06 54.7 65 50.8


User provided reference genes

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