Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 1.5e-106 389.4 181 100.0
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 1.0e-67 260.4 171 74.9
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 2.5e-53 212.6 127 74.0
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 4.4e-50 201.8 127 73.2
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 7.0e-48 194.5 129 66.7
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 8.6e-46 187.6 115 69.6
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 8.6e-46 187.6 127 63.8
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 8.6e-46 187.6 127 65.4
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 1.9e-45 186.4 176 51.7
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 5.5e-45 184.9 127 63.8
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 9.5e-45 184.1 129 63.6
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 1.2e-44 183.7 127 61.4
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 1.6e-44 183.3 127 63.0
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.6e-44 183.3 127 63.0
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 2.8e-44 182.6 176 50.6
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 3.6e-44 182.2 127 63.0
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 3.6e-44 182.2 127 63.0
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 3.6e-44 182.2 127 63.0
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 8.0e-44 181.0 127 60.6
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 1.8e-43 179.9 119 66.4
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 1.8e-43 179.9 127 59.8
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 4.0e-43 178.7 129 59.7
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 1.2e-42 177.2 127 60.6
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 1.2e-42 177.2 127 59.8
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 1.5e-42 176.8 172 51.2
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 1.5e-42 176.8 127 62.2
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 3.4e-42 175.6 127 58.3
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 3.4e-42 175.6 127 59.1
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.4e-42 175.6 127 59.1
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.4e-42 175.6 127 59.1
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 7.5e-42 174.5 124 60.5
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 7.5e-42 174.5 127 57.5
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 7.5e-42 174.5 126 59.5
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 9.8e-42 174.1 127 57.5
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 9.8e-42 174.1 122 62.3
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 1.3e-41 173.7 178 48.3
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 1.3e-41 173.7 127 61.4
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 1.7e-41 173.3 172 50.6
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 1.7e-41 173.3 128 60.9
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 1.7e-41 173.3 127 60.6
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.2e-41 172.9 127 57.5
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 2.2e-41 172.9 128 60.9
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 2.2e-41 172.9 127 61.4
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 2.8e-41 172.6 126 61.9
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 2.8e-41 172.6 127 59.1
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 3.7e-41 172.2 127 61.4
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 4.9e-41 171.8 127 58.3
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 6.3e-41 171.4 127 59.8
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 6.3e-41 171.4 127 61.4
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 6.3e-41 171.4 127 56.7
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 8.3e-41 171.0 127 59.1
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 8.3e-41 171.0 124 58.9
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 8.3e-41 171.0 130 58.5
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 1.4e-40 170.2 128 60.2
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 1.4e-40 170.2 127 59.1
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.8e-40 169.9 128 55.5
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 1.8e-40 169.9 128 58.6
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 1.8e-40 169.9 127 59.1
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 2.4e-40 169.5 117 63.2
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 4.1e-40 168.7 129 59.7
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 4.1e-40 168.7 174 48.9
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 5.4e-40 168.3 126 58.7
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 5.4e-40 168.3 128 58.6
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 1.6e-39 166.8 128 55.5
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 1.6e-39 166.8 126 57.1
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 2.0e-39 166.4 128 56.2
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 2.7e-39 166.0 126 57.1
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 2.7e-39 166.0 123 56.9
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 3.5e-39 165.6 123 56.1
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 3.5e-39 165.6 123 56.9
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 3.5e-39 165.6 132 56.8
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 4.5e-39 165.2 128 53.9
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 4.5e-39 165.2 128 55.5
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 7.8e-39 164.5 128 54.7
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 1.0e-38 164.1 123 56.1
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 1.3e-38 163.7 122 57.4
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 2.3e-38 162.9 130 53.8
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 2.9e-38 162.5 128 51.6
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 2.9e-38 162.5 129 53.5
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 2.9e-38 162.5 127 52.8
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 2.9e-38 162.5 128 56.2
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 3.9e-38 162.2 128 53.1
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 3.9e-38 162.2 143 52.4
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 6.6e-38 161.4 122 56.6
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 6.6e-38 161.4 138 52.9
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 6.6e-38 161.4 128 55.5
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 8.6e-38 161.0 129 56.6
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 2.5e-37 159.5 114 59.6
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 5.6e-37 158.3 128 55.5
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 9.5e-37 157.5 119 57.1
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 9.5e-37 157.5 128 55.5
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 1.2e-36 157.1 128 51.6
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 6.1e-36 154.8 130 52.3
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 8.0e-36 154.5 129 51.9
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 8.0e-36 154.5 129 51.9
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 8.0e-36 154.5 129 51.9
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 8.0e-36 154.5 129 51.9
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 8.0e-36 154.5 129 51.9
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 5.2e-35 151.8 126 54.8
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 6.8e-35 151.4 126 54.8
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 2.3e-30 136.3 127 49.6
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 7.3e-29 131.3 130 49.2
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 9.5e-29 131.0 108 54.6
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 1.6e-28 130.2 89 62.9
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 4.0e-27 125.6 172 41.9
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 1.7e-25 120.2 127 48.8
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 3.5e-23 112.5 85 62.4
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 1.0e-22 110.9 101 51.5
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 3.0e-22 109.4 74 63.5
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 5.1e-22 108.6 110 49.1
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 2.5e-21 106.3 73 64.4
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 5.6e-21 105.1 129 38.0
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 4.7e-20 102.1 132 40.2
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 1.4e-19 100.5 128 41.4
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.2e-18 97.4 76 51.3
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.5e-18 97.1 128 39.8
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 5.8e-18 95.1 127 36.2
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 2.2e-17 93.2 73 60.3
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 4.9e-17 92.0 94 40.4
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 4.9e-17 92.0 61 67.2
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 4.9e-17 92.0 61 67.2
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 4.9e-17 92.0 112 38.4
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 2.4e-16 89.7 105 41.0
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 4.1e-16 89.0 97 41.2
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 4.1e-16 89.0 90 43.3
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 1.1e-13 80.9 130 37.7
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 1.6e-12 77.0 114 36.0
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 3.1e-11 72.8 127 31.5
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 5.8e-10 68.6 54 53.7
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 1.3e-09 67.4 54 50.0
HanXRQChr02g0051041 Helianthus annuus HOM05D014111 ORTHO05D017056 3.8e-09 65.9 33 90.9
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 3.8e-09 65.9 57 50.9
HanXRQChr10g0282001 Helianthus annuus HOM05D014111 ORTHO05D017056 2.4e-08 63.2 35 80.0
HanXRQChr08g0233991 Helianthus annuus HOM05D014111 ORTHO05D017056 3.2e-08 62.8 33 84.8
HanXRQChr09g0246371 Helianthus annuus HOM05D014111 ORTHO05D017056 4.2e-08 62.4 34 82.4
HanXRQChr16g0498031 Helianthus annuus HOM05D014111 ORTHO05D017056 4.2e-08 62.4 34 82.4
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 7.1e-08 61.6 53 43.4
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 1.2e-07 60.8 57 43.9
HanXRQChr09g0238891 Helianthus annuus HOM05D014111 ORTHO05D017056 2.7e-07 59.7 34 79.4
HanXRQChr16g0507571 Helianthus annuus HOM05D014111 ORTHO05D017056 4.6e-07 58.9 42 69.0
HanXRQChr16g0521141 Helianthus annuus HOM05D014111 ORTHO05D017056 1.0e-06 57.8 35 74.3
HanXRQChr17g0561741 Helianthus annuus HOM05D014111 ORTHO05D017056 3.0e-06 56.2 34 76.5
HanXRQChr10g0292091 Helianthus annuus HOM05D014111 ORTHO05D219732 8.7e-06 54.7 68 45.6


User provided reference genes

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