Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0243441 Helianthus annuus HOM05D003696 ORTHO05D005158 6.3e-51 203.8 99 100.0
Lsat_1_v5_gn_5_186821 Lactuca sativa HOM05D003696 ORTHO05D005158 6.4e-19 97.4 157 42.0
HanXRQChr06g0177911 Helianthus annuus HOM05D003696 ORTHO05D005158 3.3e-15 85.1 143 39.9
Aa31LG5G20830 Aethionema arabicum HOM05D003696 ORTHO05D005158 5.6e-15 84.3 156 39.1
Rhsim01G0270500 Rhododendron simsii HOM05D003696 ORTHO05D005158 1.6e-14 82.8 143 39.2
ECA248G0710 Erigeron canadensis HOM05D003696 ORTHO05D005158 6.2e-14 80.9 143 39.9
Gohir.D07G214400 Gossypium hirsutum HOM05D003696 ORTHO05D005158 6.2e-14 80.9 143 40.6
Gohir.A07G208500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 8.1e-14 80.5 143 40.6
Gorai.001G242400 Gossypium raimondii HOM05D003696 ORTHO05D005158 8.1e-14 80.5 143 40.6
Dinv34560 Davidia involucrata HOM05D003696 ORTHO05D005158 1.1e-13 80.1 143 39.2
HanXRQChr01g0006891 Helianthus annuus HOM05D003696 ORTHO05D005158 1.4e-13 79.7 143 37.1
vmacro14880 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 1.8e-13 79.3 143 39.2
Hma1.2p1_0760F.1_g214220 Hydrangea macrophylla HOM05D003696 ORTHO05D005158 3.1e-13 78.6 143 37.8
Peaxi162Scf00049g02229 Petunia axillaris HOM05D003696 ORTHO05D005158 8.9e-13 77.0 143 38.5
Thhalv10016535m.g Eutrema salsugineum HOM05D003696 ORTHO05D005158 1.5e-12 76.3 143 37.1
vmacro02623 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 1.5e-12 76.3 143 37.8
Actinidia21150 Actinidia chinensis HOM05D003696 ORTHO05D005158 2.0e-12 75.9 143 37.1
Dinv22488 Davidia involucrata HOM05D003696 ORTHO05D005158 2.6e-12 75.5 143 36.4
Duzib133G0262 Durio zibethinus HOM05D003696 ORTHO05D005158 2.6e-12 75.5 143 37.8
Duzib138G0212 Durio zibethinus HOM05D003696 ORTHO05D005158 2.6e-12 75.5 143 37.8
Oeu011521.4 Olea europaea HOM05D003696 ORTHO05D005158 2.6e-12 75.5 141 37.6
Sp4g21230 Schrenkiella parvula HOM05D003696 ORTHO05D005158 3.4e-12 75.1 143 36.4
Thecc.01G268800 Theobroma cacao HOM05D003696 ORTHO05D005158 3.4e-12 75.1 143 37.8
GSVIVG01000711001 Vitis vinifera HOM05D003696 ORTHO05D005158 3.4e-12 75.1 143 37.1
BcaC02g07441 Brassica carinata HOM05D003696 ORTHO05D005158 4.4e-12 74.7 143 35.7
A04p29630 Brassica napus HOM05D003696 ORTHO05D005158 4.4e-12 74.7 143 35.7
C04p66920 Brassica napus HOM05D003696 ORTHO05D005158 4.4e-12 74.7 143 35.7
BolC4t28193H Brassica oleracea HOM05D003696 ORTHO05D005158 4.4e-12 74.7 143 35.7
BraA04t18429Z Brassica rapa HOM05D003696 ORTHO05D005158 4.4e-12 74.7 143 35.7
Haze_24522 Corylus avellana HOM05D003696 ORTHO05D005158 4.4e-12 74.7 158 34.8
AT2G38840 Arabidopsis thaliana HOM05D003696 ORTHO05D005158 5.8e-12 74.3 143 35.7
AL4G36150 Arabidopsis lyrata HOM05D003696 ORTHO05D005158 7.5e-12 73.9 143 35.7
BcaC01g05515 Brassica carinata HOM05D003696 ORTHO05D005158 7.5e-12 73.9 143 36.4
C03p25680 Brassica napus HOM05D003696 ORTHO05D005158 7.5e-12 73.9 143 36.4
BolC3t14954H Brassica oleracea HOM05D003696 ORTHO05D005158 7.5e-12 73.9 143 36.4
Carub.0004s2087 Capsella rubella HOM05D003696 ORTHO05D005158 7.5e-12 73.9 143 36.4
Gohir.A11G126500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 9.9e-12 73.6 143 36.4
Lj2C1161G6 Lonicera japonica HOM05D003696 ORTHO05D005158 9.9e-12 73.6 143 37.1
Nitab4.5_0004899g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 9.9e-12 73.6 119 40.3
Sopen06g035470 Solanum pennellii HOM05D003696 ORTHO05D005158 9.9e-12 73.6 143 37.8
BcaB01g03621 Brassica carinata HOM05D003696 ORTHO05D005158 1.3e-11 73.2 143 35.7
Cc01_g18910 Coffea canephora HOM05D003696 ORTHO05D005158 1.3e-11 73.2 143 35.7
Manes.05G083700 Manihot esculenta HOM05D003696 ORTHO05D005158 1.3e-11 73.2 143 35.7
Cpa.g.sc52.106 Carica papaya HOM05D003696 ORTHO05D005158 1.7e-11 72.8 143 36.4
AUR62032267 Chenopodium quinoa HOM05D003696 ORTHO05D005158 1.7e-11 72.8 121 38.8
Potri.005G217300 Populus trichocarpa HOM05D003696 ORTHO05D005158 1.7e-11 72.8 143 35.7
Rhsim13G0030400 Rhododendron simsii HOM05D003696 ORTHO05D005158 1.7e-11 72.8 169 34.3
Solyc06g084080.4 Solanum lycopersicum HOM05D003696 ORTHO05D005158 1.7e-11 72.8 143 37.8
A03p21680 Brassica napus HOM05D003696 ORTHO05D005158 2.2e-11 72.4 143 35.7
BraA03t11403Z Brassica rapa HOM05D003696 ORTHO05D005158 2.2e-11 72.4 143 35.7
Solyc09g065810.3 Solanum lycopersicum HOM05D003696 ORTHO05D005158 2.2e-11 72.4 143 36.4
Sopen09g027590 Solanum pennellii HOM05D003696 ORTHO05D005158 2.2e-11 72.4 143 36.4
CsaV3_7G027640 Cucumis sativus L. HOM05D003696 ORTHO05D005158 2.9e-11 72.0 143 35.0
Gohir.D11G132000 Gossypium hirsutum HOM05D003696 ORTHO05D005158 2.9e-11 72.0 139 36.7
Gorai.007G141200 Gossypium raimondii HOM05D003696 ORTHO05D005158 2.9e-11 72.0 139 36.7
Glyma.02G143000 Glycine max HOM05D003696 ORTHO05D005158 8.3e-11 70.5 143 35.0
Lj1g0000304 Lotus japonicus HOM05D003696 ORTHO05D005158 8.3e-11 70.5 143 35.0
THA.LOC104824177 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 8.3e-11 70.5 143 35.0
CiPaw.03G256800 Carya illinoinensis HOM05D003696 ORTHO05D005158 1.1e-10 70.1 143 35.0
Potri.002G046000 Populus trichocarpa HOM05D003696 ORTHO05D005158 1.1e-10 70.1 143 34.3
Sed0021830 Sechium edule HOM05D003696 ORTHO05D005158 1.1e-10 70.1 143 32.9
TAR362G0028 Trochodendron aralioides HOM05D003696 ORTHO05D005158 1.1e-10 70.1 143 35.7
HPP92_012304 Vanilla planifolia HOM05D003696 ORTHO05D005158 1.1e-10 70.1 143 34.3
Eucgr.B01485 Eucalyptus grandis HOM05D003696 ORTHO05D005158 1.9e-10 69.3 143 33.6
Manes.01G202600 Manihot esculenta HOM05D003696 ORTHO05D005158 1.9e-10 69.3 143 33.6
Oeu025782.1 Olea europaea HOM05D003696 ORTHO05D005158 1.9e-10 69.3 143 33.6
Aqoxy2G03500 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 2.4e-10 68.9 143 33.6
arahy.Tifrunner.gnm1.ann1.PHA4NK Arachis hypogaea HOM05D003696 ORTHO05D005158 2.4e-10 68.9 181 31.5
THA.LOC104804694 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 2.4e-10 68.9 144 36.1
TPR.G19113 Trifolium pratense HOM05D003696 ORTHO05D005158 2.4e-10 68.9 143 33.6
DCAR_002690 Daucus carota HOM05D003696 ORTHO05D005158 3.2e-10 68.6 143 33.6
Sed0026747 Sechium edule HOM05D003696 ORTHO05D005158 3.2e-10 68.6 143 32.9
TAR365G0099 Trochodendron aralioides HOM05D003696 ORTHO05D005158 3.2e-10 68.6 143 34.3
ATR0665G388 Amborella trichopoda HOM05D003696 ORTHO05D005158 4.1e-10 68.2 143 35.7
Glyma.10G031400 Glycine max HOM05D003696 ORTHO05D005158 4.1e-10 68.2 143 34.3
MD11G1276500 Malus domestica HOM05D003696 ORTHO05D005158 4.1e-10 68.2 143 35.7
Medtr7g096020 Medicago truncatula HOM05D003696 ORTHO05D005158 4.1e-10 68.2 143 32.9
PGR119G0829 Punica granatum HOM05D003696 ORTHO05D005158 4.1e-10 68.2 139 35.3
Phvul.007G176200 Phaseolus vulgaris HOM05D003696 ORTHO05D005158 5.4e-10 67.8 143 33.6
EL10Ac5g10463 Beta vulgaris HOM05D003696 ORTHO05D005158 7.1e-10 67.4 143 34.3
Nn1g02525 Nelumbo nucifera HOM05D003696 ORTHO05D005158 7.1e-10 67.4 143 34.3
RcHm_v2.0_Chr6g0289661 Rosa chinensis HOM05D003696 ORTHO05D005158 7.1e-10 67.4 143 35.0
FvH4_2g22730 Fragaria vesca HOM05D003696 ORTHO05D005158 9.2e-10 67.0 143 35.0
FAN15G1876 Fragaria x ananassa HOM05D003696 ORTHO05D005158 9.2e-10 67.0 143 35.0
FAN27G2942 Fragaria x ananassa HOM05D003696 ORTHO05D005158 9.2e-10 67.0 143 35.0
SHI09972 Sapria himalayana HOM05D003696 ORTHO05D005158 9.2e-10 67.0 157 33.1
VMungo0720G2873 Vigna mungo HOM05D003696 ORTHO05D005158 9.2e-10 67.0 143 35.0
arahy.Tifrunner.gnm1.ann1.RW1UC5 Arachis hypogaea HOM05D003696 ORTHO05D005158 1.2e-09 66.6 141 34.8
Migut.D00342 Erythranthe guttata HOM05D003696 ORTHO05D005158 1.2e-09 66.6 139 34.5
Prupe.8G233000 Prunus persica HOM05D003696 ORTHO05D005158 1.2e-09 66.6 143 35.0
arahy.Tifrunner.gnm1.ann1.R5NTZZ Arachis hypogaea HOM05D003696 ORTHO05D005158 1.6e-09 66.2 143 33.6
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 1.6e-09 66.2 115 40.0
AUR62011954 Chenopodium quinoa HOM05D003696 ORTHO05D005158 2.1e-09 65.9 143 33.6
Ca_08640_v3 Cicer arietinum L. HOM05D003696 ORTHO05D005158 2.1e-09 65.9 143 32.9
Lj5g0013019 Lotus japonicus HOM05D003696 ORTHO05D005158 2.1e-09 65.9 143 35.0
Nitab4.5_0001044g0030 Nicotiana tabacum HOM05D003696 ORTHO05D005158 2.1e-09 65.9 154 33.1
Os07g0181700 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 2.1e-09 65.9 143 34.3
TPR.G39048 Trifolium pratense HOM05D003696 ORTHO05D005158 2.1e-09 65.9 148 31.8
Ah.02g111370 Amaranthus hybridus HOM05D003696 ORTHO05D005158 2.7e-09 65.5 143 31.5
MD03G1255900 Malus domestica HOM05D003696 ORTHO05D005158 2.7e-09 65.5 143 34.3
Psat3g060760 Pisum sativum HOM05D003696 ORTHO05D005158 2.7e-09 65.5 139 33.1
SalBow4G1850 Salvia bowleyana HOM05D003696 ORTHO05D005158 2.7e-09 65.5 137 36.5
Atru.chr5.1552 Acer truncatum HOM05D003696 ORTHO05D005158 3.5e-09 65.1 143 32.9
Lalb_Chr06g0162701 Lupinus albus HOM05D003696 ORTHO05D005158 4.6e-09 64.7 143 32.9
PSO832G3077 Papaver somniferum HOM05D003696 ORTHO05D005158 4.6e-09 64.7 143 32.9
Psat6g058040 Pisum sativum HOM05D003696 ORTHO05D005158 4.6e-09 64.7 143 32.9
Zm00001eb301480 Zea mays HOM05D003696 ORTHO05D005158 4.6e-09 64.7 143 32.9
MSTRG.18280 Avicennia marina HOM05D003696 ORTHO05D005158 6.0e-09 64.3 143 32.9
CANSAT25G2047 Cannabis sativa HOM05D003696 ORTHO05D005158 6.0e-09 64.3 143 35.0
CDE07G1976 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 6.0e-09 64.3 143 32.2
Medtr1g070940 Medicago truncatula HOM05D003696 ORTHO05D005158 6.0e-09 64.3 143 32.9
Sc05g0001070 Simmondsia chinensis HOM05D003696 ORTHO05D005158 1.0e-08 63.5 143 31.5
unitig_22.g5276 Utricularia gibba HOM05D003696 ORTHO05D005158 1.0e-08 63.5 139 33.8
Zm00001eb060850 Zea mays HOM05D003696 ORTHO05D005158 1.0e-08 63.5 143 32.9
Ciclev10019381m.g Citrus clementina HOM05D003696 ORTHO05D005158 1.3e-08 63.2 143 32.9
Lalb_Chr01g0019921 Lupinus albus HOM05D003696 ORTHO05D005158 1.3e-08 63.2 143 32.9
PSO210G6865 Papaver somniferum HOM05D003696 ORTHO05D005158 1.7e-08 62.8 143 32.2
Zm00001eb060800 Zea mays HOM05D003696 ORTHO05D005158 1.7e-08 62.8 143 32.9
TWI18G1352 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 2.3e-08 62.4 143 31.5
CARHR133570 Cardamine hirsuta HOM05D003696 ORTHO05D005158 3.0e-08 62.0 134 34.3
MELO3C015756.2 Cucumis melo HOM05D003696 ORTHO05D005158 3.0e-08 62.0 134 34.3
Os03g0796800 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 3.0e-08 62.0 141 32.6
CDE04G3179 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 5.1e-08 61.2 139 33.1
CAN.G1488.3 Capsicum annuum HOM05D003696 ORTHO05D005158 6.6e-08 60.8 134 34.3
HanXRQChr04g0098101 Helianthus annuus HOM05D003696 ORTHO05D005158 6.6e-08 60.8 31 83.9
Sabra02G0037000 Salix brachista HOM05D003696 ORTHO05D005158 6.6e-08 60.8 169 29.6
Aqoxy5G00373 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 8.6e-08 60.5 143 33.6
TWI75G1072 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 8.6e-08 60.5 143 30.1
Zm00001eb212950 Zea mays HOM05D003696 ORTHO05D005158 8.6e-08 60.5 143 31.5
arahy.Tifrunner.gnm1.ann1.YF2GLB Arachis hypogaea HOM05D003696 ORTHO05D005158 1.1e-07 60.1 156 32.1
CAN.G771.13 Capsicum annuum HOM05D003696 ORTHO05D005158 7.3e-07 57.4 33 78.8
PGSC0003DMG400020060 Solanum tuberosum HOM05D003696 ORTHO05D005158 7.3e-07 57.4 33 78.8
Ah.11g050060 Amaranthus hybridus HOM05D003696 ORTHO05D005158 9.5e-07 57.0 33 75.8
Actinidia04660 Actinidia chinensis HOM05D003696 ORTHO05D005158 1.6e-06 56.2 33 78.8
DCAR_018442 Daucus carota HOM05D003696 ORTHO05D005158 2.1e-06 55.8 173 30.1
ClCG09G007480 Citrullus lanatus HOM05D003696 ORTHO05D005158 2.8e-06 55.5 33 75.8
CSS0026583 Camellia sinensis var. sinensis HOM05D003696 ORTHO05D005158 3.6e-06 55.1 33 72.7
FAN20G1369 Fragaria x ananassa HOM05D003696 ORTHO05D005158 4.7e-06 54.7 33 75.8
FAN24G1113 Fragaria x ananassa HOM05D003696 ORTHO05D005158 4.7e-06 54.7 33 75.8
Hund22720 Selenicereus undatus HOM05D003696 ORTHO05D005158 4.7e-06 54.7 33 75.8
COL.COLO4_06092 Corchorus olitorius HOM05D003696 ORTHO05D005158 6.2e-06 54.3 31 74.2
Peaxi162Scf01311g00020 Petunia axillaris HOM05D003696 ORTHO05D005158 6.2e-06 54.3 33 72.7


User provided reference genes

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