Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 1.3e-44 182.6 86 100.0
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 1.3e-44 182.6 86 100.0
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 6.5e-44 180.3 86 98.8
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 1.6e-42 175.6 86 96.5
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 4.7e-42 174.1 86 95.3
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 1.8e-38 162.2 85 88.2
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 1.2e-37 159.5 84 86.9
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 1.2e-37 159.5 86 83.7
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 2.0e-37 158.7 84 86.9
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.6e-37 158.3 86 88.4
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 2.6e-37 158.3 84 84.5
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 3.5e-37 157.9 84 85.7
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 4.5e-37 157.5 84 85.7
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 4.5e-37 157.5 79 91.1
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 1.0e-36 156.4 79 89.9
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 1.7e-36 155.6 84 85.7
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 2.9e-36 154.8 86 82.6
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 2.9e-36 154.8 84 85.7
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 3.8e-36 154.5 83 84.3
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 6.5e-36 153.7 86 80.2
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 6.5e-36 153.7 86 80.2
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 8.5e-36 153.3 84 83.3
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.1e-35 152.9 86 83.7
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 1.4e-35 152.5 84 83.3
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 9.4e-35 149.8 86 82.6
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.2e-34 149.4 86 82.6
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.2e-34 149.4 76 88.2
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.2e-34 149.4 79 86.1
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.2e-34 149.4 79 86.1
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.2e-34 149.4 79 86.1
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.2e-34 149.4 79 86.1
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 1.6e-34 149.1 84 83.3
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.6e-34 149.1 78 85.9
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.6e-34 149.1 86 79.1
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 4.7e-34 147.5 86 80.2
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 4.7e-34 147.5 86 80.2
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 4.7e-34 147.5 86 80.2
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 4.7e-34 147.5 86 82.6
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 6.1e-34 147.1 93 74.2
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 1.4e-33 146.0 86 81.4
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.4e-33 146.0 85 78.8
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.4e-33 146.0 85 78.8
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 1.4e-33 146.0 89 77.5
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 1.4e-33 146.0 89 77.5
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 1.8e-33 145.6 86 79.1
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 1.8e-33 145.6 86 75.6
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 2.3e-33 145.2 85 76.5
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 2.3e-33 145.2 84 82.1
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 3.9e-33 144.4 93 72.0
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 5.2e-33 144.1 89 74.2
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 5.2e-33 144.1 81 79.0
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 8.8e-33 143.3 84 76.2
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 8.8e-33 143.3 87 79.3
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 8.8e-33 143.3 79 79.7
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 1.1e-32 142.9 84 75.0
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 2.0e-32 142.1 86 77.9
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 2.0e-32 142.1 84 79.8
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 2.6e-32 141.7 85 76.5
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.6e-32 141.7 86 76.7
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 3.3e-32 141.4 88 78.4
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 4.4e-32 141.0 84 76.2
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 5.7e-32 140.6 85 76.5
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 5.7e-32 140.6 85 76.5
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 5.7e-32 140.6 87 77.0
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 5.7e-32 140.6 76 84.2
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 7.4e-32 140.2 85 78.8
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 7.4e-32 140.2 86 72.1
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 7.4e-32 140.2 86 73.3
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 9.7e-32 139.8 84 77.4
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 9.7e-32 139.8 73 87.7
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 1.7e-31 139.0 86 72.1
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.7e-31 139.0 85 75.3
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 1.7e-31 139.0 84 77.4
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 2.2e-31 138.7 83 71.1
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 2.2e-31 138.7 86 72.1
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 2.2e-31 138.7 77 80.5
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 2.8e-31 138.3 84 72.6
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.8e-31 138.3 76 80.3
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 2.8e-31 138.3 76 80.3
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 2.8e-31 138.3 79 77.2
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 3.7e-31 137.9 86 73.3
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 4.8e-31 137.5 87 74.7
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 4.8e-31 137.5 77 79.2
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 4.8e-31 137.5 77 79.2
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 6.3e-31 137.1 86 73.3
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 8.2e-31 136.7 86 70.9
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 8.2e-31 136.7 84 77.4
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 1.1e-30 136.3 84 71.4
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 1.1e-30 136.3 82 73.2
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.8e-30 135.6 84 73.8
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 3.1e-30 134.8 76 80.3
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 4.1e-30 134.4 95 65.3
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 4.1e-30 134.4 86 74.4
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 5.3e-30 134.0 80 73.8
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 5.3e-30 134.0 70 87.1
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 5.3e-30 134.0 70 87.1
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 7.0e-30 133.7 86 69.8
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 2.6e-29 131.7 98 63.3
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 2.6e-29 131.7 84 75.0
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 3.5e-29 131.3 87 66.7
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 3.5e-29 131.3 70 84.3
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 7.7e-29 130.2 90 73.3
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 7.7e-29 130.2 84 73.8
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 1.0e-28 129.8 78 70.5
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 1.0e-28 129.8 84 72.6
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 1.3e-28 129.4 68 85.3
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 1.7e-28 129.0 68 83.8
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 2.9e-28 128.3 73 74.0
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 3.8e-28 127.9 87 64.4
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 5.0e-28 127.5 63 90.5
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 8.5e-28 126.7 68 85.3
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.1e-27 126.3 79 69.6
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 1.1e-27 126.3 86 65.1
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 1.1e-27 126.3 92 67.4
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 1.5e-27 125.9 76 76.3
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 2.5e-27 125.2 115 53.9
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 3.2e-27 124.8 85 69.4
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 3.2e-27 124.8 86 62.8
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 7.2e-27 123.6 79 73.4
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 1.2e-26 122.9 65 83.1
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 1.2e-26 122.9 76 75.0
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 3.6e-26 121.3 85 67.1
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 3.6e-26 121.3 85 69.4
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 6.1e-26 120.6 69 84.1
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 8.0e-26 120.2 74 77.0
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 2.3e-25 118.6 67 80.6
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 4.0e-25 117.9 85 65.9
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.2e-24 116.3 85 68.2
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.2e-24 116.3 86 69.8
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 2.6e-24 115.2 87 63.2
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 3.7e-23 111.3 69 76.8
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 3.7e-23 111.3 72 68.1
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 8.3e-23 110.2 99 58.6
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 8.3e-23 110.2 52 92.3
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 8.3e-23 110.2 52 92.3
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 8.3e-23 110.2 71 69.0
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.1e-22 109.8 54 85.2
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 1.4e-22 109.4 78 71.8
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.8e-22 109.0 76 69.7
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 1.6e-21 105.9 71 60.6
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 4.5e-21 104.4 56 83.9
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 5.9e-21 104.0 80 51.2
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 1.0e-20 103.2 84 56.0
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 2.2e-20 102.1 54 77.8
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 2.2e-20 102.1 100 54.0
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 3.8e-20 101.3 70 70.0
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 1.9e-19 99.0 52 84.6
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 5.5e-19 97.4 97 51.5
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 7.2e-19 97.1 52 86.5
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 1.5e-16 89.4 72 59.7
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 3.4e-16 88.2 62 58.1
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 9.8e-16 86.7 59 69.5
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 4.1e-14 81.3 52 78.8
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 1.0e-12 76.6 57 57.9
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 1.2e-10 69.7 59 59.3
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 2.1e-10 68.9 47 61.7
MELO3C035440.2 Cucumis melo HOM05D004551 ORTHO05D005262 8.0e-10 67.0 116 39.7
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 1.0e-09 66.6 59 49.2
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 2.2e-07 58.9 62 38.7
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 2.4e-06 55.5 43 51.2
Hund19448 Selenicereus undatus HOM05D002137 ORTHO05D002144 7.0e-06 53.9 126 31.7


User provided reference genes

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