Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0242141 Helianthus annuus HOM05D004888 ORTHO05D005792 7.5e-39 163.3 79 100.0
HanXRQChr11g0336191 Helianthus annuus HOM05D004888 ORTHO05D005792 6.6e-35 150.2 78 92.3
Lsat_1_v5_gn_7_108760 Lactuca sativa HOM05D004888 ORTHO05D005792 4.0e-32 141.0 78 85.9
ECA236G1052 Erigeron canadensis HOM05D004888 ORTHO05D005792 1.4e-29 132.5 78 79.5
Dinv40745 Davidia involucrata HOM05D004888 ORTHO05D005792 1.7e-27 125.6 78 73.1
DCAR_010046 Daucus carota HOM05D004888 ORTHO05D005792 1.1e-26 122.9 78 74.4
Oeu007587.1 Olea europaea HOM05D004888 ORTHO05D005792 7.3e-26 120.2 78 69.2
Peaxi162Scf00964g00141 Petunia axillaris HOM05D004888 ORTHO05D005792 3.6e-25 117.9 78 69.2
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 4.7e-25 117.5 78 67.9
Sed0003457 Sechium edule HOM05D004888 ORTHO05D005792 4.7e-25 117.5 78 70.5
vmacro11732 Vaccinium macrocarpon HOM05D004888 ORTHO05D005792 8.1e-25 116.7 78 67.9
CSS0004402 Camellia sinensis var. sinensis HOM05D004888 ORTHO05D005792 1.1e-24 116.3 78 67.9
Oeu020120.2 Olea europaea HOM05D004888 ORTHO05D005792 1.4e-24 115.9 78 65.4
Solyc10g006310.3 Solanum lycopersicum HOM05D004888 ORTHO05D005792 1.4e-24 115.9 78 66.7
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 1.8e-24 115.5 78 65.4
CAN.G337.120 Capsicum annuum HOM05D004888 ORTHO05D005792 1.8e-24 115.5 78 67.9
Nitab4.5_0003812g0040 Nicotiana tabacum HOM05D004888 ORTHO05D005792 1.8e-24 115.5 78 67.9
Sopen10g002260 Solanum pennellii HOM05D004888 ORTHO05D005792 1.8e-24 115.5 78 65.4
Solyc07g064470.4 Solanum lycopersicum HOM05D004888 ORTHO05D005792 3.1e-24 114.8 78 69.2
Sopen07g032670 Solanum pennellii HOM05D004888 ORTHO05D005792 3.1e-24 114.8 78 69.2
Cc05_g13810 Coffea canephora HOM05D004888 ORTHO05D005792 5.2e-24 114.0 76 68.4
Nitab4.5_0001913g0080 Nicotiana tabacum HOM05D004888 ORTHO05D005792 5.2e-24 114.0 78 66.7
Aqoxy1G03261 Aquilegia oxysepala HOM05D004888 ORTHO05D005792 9.0e-24 113.2 78 66.7
Actinidia36945 Actinidia chinensis HOM05D004888 ORTHO05D005792 1.5e-23 112.5 77 67.5
ClCG05G014360 Citrullus lanatus HOM05D004888 ORTHO05D005792 2.0e-23 112.1 78 66.7
Rhsim06G0216300 Rhododendron simsii HOM05D004888 ORTHO05D005792 4.4e-23 110.9 78 66.7
CiPaw.12G128800 Carya illinoinensis HOM05D004888 ORTHO05D005792 5.8e-23 110.5 78 65.4
COL.COLO4_09650 Corchorus olitorius HOM05D004888 ORTHO05D005792 5.8e-23 110.5 78 65.4
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 5.8e-23 110.5 78 62.8
Actinidia05101 Actinidia chinensis HOM05D004888 ORTHO05D005792 7.6e-23 110.2 78 65.4
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 7.6e-23 110.2 78 62.8
PSO541G5647 Papaver somniferum HOM05D004888 ORTHO05D005792 9.9e-23 109.8 78 66.7
PSO675G7988 Papaver somniferum HOM05D004888 ORTHO05D005792 9.9e-23 109.8 78 66.7
FAN21G0776 Fragaria x ananassa HOM05D004888 ORTHO05D005792 1.7e-22 109.0 78 65.4
FAN25G0554 Fragaria x ananassa HOM05D000287 ORTHO05D002423 1.7e-22 109.0 78 65.4
GSVIVG01037626001 Vitis vinifera HOM05D004888 ORTHO05D005792 1.7e-22 109.0 78 62.8
CANSAT10G0001 Cannabis sativa HOM05D004888 ORTHO05D005792 2.2e-22 108.6 78 65.4
CANSAT21G1950 Cannabis sativa HOM05D004888 ORTHO05D005792 2.2e-22 108.6 78 65.4
Manes.03G124500 Manihot esculenta HOM05D004888 ORTHO05D005792 2.9e-22 108.2 78 64.1
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 2.9e-22 108.2 78 64.1
TWI39G0566 Tripterygium wilfordii HOM05D004888 ORTHO05D005792 2.9e-22 108.2 78 66.7
THA.LOC104798774 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 3.8e-22 107.8 78 65.4
TAR627G0539 Trochodendron aralioides HOM05D004888 ORTHO05D005792 3.8e-22 107.8 78 61.5
Duzib213G0117 Durio zibethinus HOM05D004888 ORTHO05D005792 4.9e-22 107.5 78 62.8
Prupe.4G211200 Prunus persica HOM05D004888 ORTHO05D005792 4.9e-22 107.5 78 65.4
Cpa.g.sc97.18 Carica papaya HOM05D004888 ORTHO05D005792 6.4e-22 107.1 78 62.8
Medtr5g092160 Medicago truncatula HOM05D004888 ORTHO05D005792 6.4e-22 107.1 78 62.8
RcHm_v2.0_Chr5g0039111 Rosa chinensis HOM05D004888 ORTHO05D005792 6.4e-22 107.1 78 64.1
Ciclev10009934m.g Citrus clementina HOM05D004888 ORTHO05D005792 8.4e-22 106.7 78 64.1
CDE05G3279 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 1.1e-21 106.3 78 61.5
PGSC0003DMG400022222 Solanum tuberosum HOM05D004888 ORTHO05D005792 1.1e-21 106.3 78 66.7
Eucgr.F03460 Eucalyptus grandis HOM05D004888 ORTHO05D005792 1.4e-21 105.9 78 62.8
Gohir.A04G018500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 1.4e-21 105.9 78 62.8
Gohir.D05G367500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 1.4e-21 105.9 78 62.8
Gorai.009G435100 Gossypium raimondii HOM05D004888 ORTHO05D005792 1.4e-21 105.9 78 62.8
MD11G1221000 Malus domestica HOM05D004888 ORTHO05D005792 1.4e-21 105.9 78 62.8
Manes.15G072900 Manihot esculenta HOM05D004888 ORTHO05D005792 1.4e-21 105.9 78 61.5
THA.LOC104817873 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 1.9e-21 105.5 78 64.1
Lalb_Chr04g0248511 Lupinus albus HOM05D004888 ORTHO05D005792 2.4e-21 105.1 78 59.0
CDE11G1067 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 3.2e-21 104.8 78 61.5
Atru.chr2.3374 Acer truncatum HOM05D004888 ORTHO05D005792 4.2e-21 104.4 78 65.4
Ciclev10009938m.g Citrus clementina HOM05D004888 ORTHO05D005792 4.2e-21 104.4 78 62.8
Duzib268G1286 Durio zibethinus HOM05D004888 ORTHO05D005792 4.2e-21 104.4 78 61.5
FvH4_3g22450 Fragaria vesca HOM05D004888 ORTHO05D005792 4.2e-21 104.4 78 62.8
FAN11G0846 Fragaria x ananassa HOM05D000287 ORTHO05D002423 4.2e-21 104.4 78 62.8
TWI38G0633 Tripterygium wilfordii HOM05D004888 ORTHO05D005792 4.2e-21 104.4 78 64.1
Hma1.2p1_1222F.1_g268220 Hydrangea macrophylla HOM05D004888 ORTHO05D005792 5.4e-21 104.0 78 61.5
QL08p010712 Quercus lobata HOM05D004888 ORTHO05D005792 5.4e-21 104.0 78 59.0
QL08p011155 Quercus lobata HOM05D004888 ORTHO05D005792 5.4e-21 104.0 78 59.0
Duzib170G0778 Durio zibethinus HOM05D004888 ORTHO05D005792 7.1e-21 103.6 78 61.5
Duzib170G1055 Durio zibethinus HOM05D004888 ORTHO05D005792 7.1e-21 103.6 78 61.5
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 9.3e-21 103.2 78 61.5
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 9.3e-21 103.2 78 61.5
TPR.G1165 Trifolium pratense HOM05D004888 ORTHO05D005792 9.3e-21 103.2 78 61.5
Carub.0003s2047 Capsella rubella HOM05D004888 ORTHO05D005792 1.2e-20 102.8 78 61.5
Phvul.008G266100 Phaseolus vulgaris HOM05D004888 ORTHO05D005792 1.6e-20 102.4 78 61.5
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 1.6e-20 102.4 78 60.3
BcaB04g19111 Brassica carinata HOM05D004888 ORTHO05D005792 2.1e-20 102.1 78 61.5
Glyma.14G024900 Glycine max HOM05D004888 ORTHO05D005792 2.1e-20 102.1 78 61.5
Psat2g013600 Pisum sativum HOM05D004888 ORTHO05D005792 2.1e-20 102.1 78 62.8
Potri.001G424000 Populus trichocarpa HOM05D004888 ORTHO05D005792 2.1e-20 102.1 78 59.0
Sc03g0008650 Simmondsia chinensis HOM05D004888 ORTHO05D005792 2.1e-20 102.1 78 61.5
Sabra16G0288800 Salix brachista HOM05D004888 ORTHO05D005792 2.7e-20 101.7 78 59.0
Os03g0568500 Oryza sativa ssp. japonica HOM05D004888 ORTHO05D005792 3.5e-20 101.3 78 59.0
Nn1g07117 Nelumbo nucifera HOM05D004888 ORTHO05D005792 4.6e-20 100.9 78 60.3
VMungo0647G2125 Vigna mungo HOM05D004888 ORTHO05D005792 4.6e-20 100.9 78 59.0
arahy.Tifrunner.gnm1.ann1.7UQ7HQ Arachis hypogaea HOM05D004888 ORTHO05D005792 6.0e-20 100.5 78 59.0
arahy.Tifrunner.gnm1.ann1.UMZK2D Arachis hypogaea HOM05D004888 ORTHO05D005792 6.0e-20 100.5 78 59.0
AUR62015745 Chenopodium quinoa HOM05D004888 ORTHO05D005792 6.0e-20 100.5 78 61.5
MD03G1204200 Malus domestica HOM05D004888 ORTHO05D005792 6.0e-20 100.5 78 60.3
Hund23258 Selenicereus undatus HOM05D004888 ORTHO05D005792 7.8e-20 100.1 78 61.5
Sp3g18510 Schrenkiella parvula HOM05D004888 ORTHO05D005792 1.0e-19 99.8 78 60.3
Zm00001eb048800 Zea mays HOM05D004888 ORTHO05D005792 1.0e-19 99.8 78 59.0
Ah.04g165810 Amaranthus hybridus HOM05D004888 ORTHO05D005792 1.3e-19 99.4 78 61.5
AT3G20510 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 1.3e-19 99.4 78 59.0
EL10Ac4g07839 Beta vulgaris HOM05D004888 ORTHO05D005792 1.3e-19 99.4 78 60.3
Ca_06312_v3 Cicer arietinum L. HOM05D004888 ORTHO05D005792 1.3e-19 99.4 78 57.7
Haze_09660 Corylus avellana HOM05D004888 ORTHO05D005792 1.3e-19 99.4 98 53.1
PGR031G1607 Punica granatum HOM05D004888 ORTHO05D005792 1.3e-19 99.4 78 60.3
Hund02067 Selenicereus undatus HOM05D004888 ORTHO05D005792 1.3e-19 99.4 78 60.3
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 1.3e-19 99.4 78 60.3
AUR62020467 Chenopodium quinoa HOM05D004888 ORTHO05D005792 1.7e-19 99.0 78 60.3
Thhalv10021782m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 2.3e-19 98.6 78 59.0
BcaNung06349 Brassica carinata HOM05D004888 ORTHO05D005792 3.9e-19 97.8 78 59.0
CARHR096270 Cardamine hirsuta HOM05D004888 ORTHO05D005792 3.9e-19 97.8 78 56.4
LjContig00272g0005832 Lotus japonicus HOM05D004888 ORTHO05D005792 3.9e-19 97.8 78 59.0
AL3G34290 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 5.1e-19 97.4 78 57.7
Sabra11G0123700 Salix brachista HOM05D004888 ORTHO05D005792 5.1e-19 97.4 78 56.4
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 6.6e-19 97.1 78 56.4
Aa31LG8G7320 Aethionema arabicum HOM05D004888 ORTHO05D005792 8.7e-19 96.7 78 60.3
BcaC01g03552 Brassica carinata HOM05D001160 ORTHO05D001092 1.1e-18 96.3 78 57.7
BolC3t17405H Brassica oleracea HOM05D001160 ORTHO05D001092 1.1e-18 96.3 78 57.7
MBI18_g28089_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 1.1e-18 96.3 78 55.1
Mapoly0043s0001 Marchantia polymorpha HOM05D004888 ORTHO05D005792 1.1e-18 96.3 78 57.7
MSTRG.6911 Avicennia marina HOM05D004888 ORTHO05D005792 2.5e-18 95.1 78 57.7
A03p41780 Brassica napus HOM05D001160 ORTHO05D005792 2.5e-18 95.1 78 56.4
A05p28330 Brassica napus HOM05D001160 ORTHO05D001092 3.3e-18 94.7 78 57.7
Thhalv10011871m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 5.6e-18 94.0 78 56.4
Pp3c25_1060 Physcomitrium patens HOM05D004888 ORTHO05D005792 7.3e-18 93.6 78 59.0
Peaxi162Scf00387g00025 Petunia axillaris HOM05D004888 ORTHO05D005792 9.6e-18 93.2 66 63.6
AL1G58480 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 1.3e-17 92.8 78 55.1
AT1G50740 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 1.3e-17 92.8 78 55.1
BolC5t33098H Brassica oleracea HOM05D004888 ORTHO05D005792 1.3e-17 92.8 78 56.4
BraA05t21716Z Brassica rapa HOM05D001160 ORTHO05D001092 1.3e-17 92.8 78 56.4
C05p43820 Brassica napus HOM05D001160 ORTHO05D001092 1.6e-17 92.4 78 56.4
CARHR040840 Cardamine hirsuta HOM05D004888 ORTHO05D005792 2.1e-17 92.0 78 53.8
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 2.8e-17 91.7 79 57.0
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 2.8e-17 91.7 79 57.0
SMO270G0016 Selaginella moellendorffii HOM05D004888 ORTHO05D005792 3.6e-17 91.3 78 51.3
Sed0022426 Sechium edule HOM05D004888 ORTHO05D005792 4.8e-17 90.9 80 57.5
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 6.2e-17 90.5 79 57.0
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 8.1e-17 90.1 79 55.7
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 8.1e-17 90.1 79 55.7
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 1.1e-16 89.7 79 55.7
Cfa020361 Carpinus fangiana HOM05D004888 ORTHO05D005792 1.1e-16 89.7 67 62.7
CsaV3_3G023050 Cucumis sativus L. HOM05D004888 ORTHO05D005792 1.4e-16 89.4 75 60.0
Aa31LG10G3270 Aethionema arabicum HOM05D004888 ORTHO05D005792 1.8e-16 89.0 78 52.6
MELO3C030728.2 Cucumis melo HOM05D004888 ORTHO05D005792 1.8e-16 89.0 66 63.6
ATR0752G132 Amborella trichopoda HOM05D004888 ORTHO05D005792 2.0e-15 85.5 66 56.1
Zm00001eb219860 Zea mays HOM05D004888 ORTHO05D005792 9.9e-15 83.2 66 57.6
MBI18_g45255_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 1.9e-13 79.0 78 47.4
Nn1g03567 Nelumbo nucifera HOM05D004888 ORTHO05D005792 2.4e-13 78.6 78 46.2
CBR_g50174 Chara braunii HOM05D004888 ORTHO05D005792 3.2e-13 78.2 78 48.7
SHI31853 Sapria himalayana HOM05D004888 ORTHO05D005792 7.1e-13 77.0 73 47.9
Nitab4.5_0005048g0090 Nicotiana tabacum HOM05D004888 ORTHO05D005792 2.7e-12 75.1 78 48.7
HPP92_001782 Vanilla planifolia HOM05D004888 ORTHO05D005792 1.3e-11 72.8 78 42.3
Gohir.A01G079000 Gossypium hirsutum HOM05D004888 ORTHO05D005792 3.3e-10 68.2 49 67.3
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 3.3e-10 68.2 78 43.6
Cfa020359 Carpinus fangiana HOM05D000232 ORTHO05D000145 2.4e-08 62.0 46 58.7
Sp7g03160 Schrenkiella parvula HOM05D004888 ORTHO05D005792 4.0e-08 61.2 59 50.8
Sc16g0006350 Simmondsia chinensis HOM05D004888 ORTHO05D005792 1.5e-07 59.3 78 35.9
Sc16g0006330 Simmondsia chinensis HOM05D004888 ORTHO05D005792 5.8e-07 57.4 77 39.0
RcHm_v2.0_Chr7g0216541 Rosa chinensis HOM05D004888 ORTHO05D005792 3.8e-06 54.7 54 51.9
Sc07g0006180 Simmondsia chinensis HOM05D004888 ORTHO05D005792 3.8e-06 54.7 76 42.1
C06p24380 Brassica napus HOM05D004475 ORTHO05D005235 8.4e-06 53.5 74 39.2
BolC6t37586H Brassica oleracea HOM05D004475 ORTHO05D005235 8.4e-06 53.5 74 39.2


User provided reference genes

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