Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 2.7e-177 625.2 302 100.0
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 2.0e-148 529.3 302 84.4
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 2.0e-140 502.7 287 82.9
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 3.5e-137 491.9 299 80.6
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 4.8e-126 454.9 300 74.3
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 3.2e-122 442.2 298 73.2
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 3.3e-119 432.2 273 75.1
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 7.4e-119 431.0 289 71.6
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 3.7e-118 428.7 288 72.6
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 6.3e-118 427.9 291 70.8
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 6.3e-118 427.9 290 71.0
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 8.2e-118 427.6 292 72.6
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 5.3e-117 424.9 273 74.7
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 6.9e-117 424.5 295 68.8
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 2.0e-116 422.9 290 70.3
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 3.4e-116 422.2 273 71.8
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 4.5e-116 421.8 289 70.6
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 7.7e-116 421.0 291 69.4
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.0e-115 420.6 286 70.6
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 1.7e-115 419.9 306 67.6
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.2e-115 419.5 270 73.0
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 5.0e-115 418.3 287 69.3
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 6.5e-115 417.9 295 68.1
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 8.5e-115 417.5 288 70.1
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 1.1e-114 417.2 296 68.9
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.1e-114 417.2 282 70.9
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.9e-114 416.4 289 69.6
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.9e-114 416.4 293 68.6
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.2e-114 415.2 288 70.5
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 7.2e-114 414.5 285 68.8
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 9.4e-114 414.1 289 69.2
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 9.4e-114 414.1 292 69.2
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 9.4e-114 414.1 292 69.2
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 9.4e-114 414.1 286 68.5
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.2e-113 413.7 288 70.1
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.6e-113 413.3 301 68.1
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.6e-113 413.3 301 68.1
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 3.6e-113 412.1 292 68.8
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 4.7e-113 411.8 286 70.6
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 6.1e-113 411.4 302 66.6
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 7.9e-113 411.0 273 72.2
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 5.1e-112 408.3 293 68.3
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 5.1e-112 408.3 286 68.9
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 6.7e-112 407.9 288 70.1
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 8.8e-112 407.5 263 73.4
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 1.1e-111 407.1 264 73.5
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 1.1e-111 407.1 264 73.5
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 1.5e-111 406.8 286 67.1
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 4.4e-111 405.2 292 67.1
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.8e-110 401.7 284 69.0
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 6.3e-110 401.4 273 68.1
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 6.3e-110 401.4 292 66.8
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 8.2e-110 401.0 289 67.1
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 1.1e-109 400.6 297 66.0
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.4e-109 400.2 295 66.1
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.8e-109 399.8 294 67.0
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 4.1e-109 398.7 291 67.0
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 9.1e-109 397.5 297 65.7
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 9.1e-109 397.5 303 65.3
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 2.6e-108 396.0 295 66.8
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 3.5e-108 395.6 265 70.2
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 3.5e-108 395.6 298 66.4
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 5.9e-108 394.8 291 67.4
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 5.9e-108 394.8 282 66.0
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 1.0e-107 394.0 264 69.7
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 8.5e-107 391.0 286 67.5
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 8.5e-107 391.0 300 64.0
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 8.5e-107 391.0 248 76.6
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 8.5e-107 391.0 299 63.5
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 7.2e-106 387.9 286 65.7
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 2.1e-105 386.3 298 65.4
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 3.6e-105 385.6 287 64.1
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 3.0e-104 382.5 236 77.5
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.0e-103 379.8 286 62.6
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 4.4e-103 378.6 227 76.7
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 4.4e-103 378.6 288 64.6
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 7.4e-103 377.9 274 65.3
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 2.8e-102 375.9 280 66.1
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 3.7e-102 375.6 276 64.5
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 2.1e-97 359.8 288 60.4
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.0e-96 357.5 284 64.1
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 8.8e-96 354.4 286 62.9
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.2e-95 354.0 290 58.6
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 3.4e-95 352.4 264 66.7
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 4.8e-94 348.6 260 62.7
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 1.1e-93 347.4 245 70.2
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 1.8e-93 346.7 295 57.6
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.8e-93 346.7 227 72.7
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 2.4e-93 346.3 261 62.1
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 1.6e-92 343.6 385 48.3
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 1.0e-91 340.9 236 70.3
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 2.2e-91 339.7 259 61.8
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 1.0e-88 330.9 289 56.1
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 1.4e-88 330.5 284 54.6
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 1.7e-86 323.6 233 65.2
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 3.1e-85 319.3 224 66.5
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 1.0e-83 314.3 276 56.9
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 2.3e-83 313.2 277 56.0
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.5e-82 310.5 212 68.9
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 1.5e-82 310.5 272 55.1
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 1.9e-82 310.1 272 56.2
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 7.2e-82 308.1 272 55.9
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 9.5e-82 307.8 256 59.0
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 1.2e-81 307.4 272 55.9
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 1.2e-81 307.4 272 55.9
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 1.2e-81 307.4 272 55.9
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 2.8e-81 306.2 273 56.0
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 4.7e-81 305.4 278 56.1
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 4.7e-81 305.4 267 54.3
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 4.0e-80 302.4 245 59.2
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 2.0e-79 300.1 257 57.2
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 5.7e-79 298.5 210 69.0
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 2.9e-78 296.2 281 51.2
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 1.3e-75 287.3 232 58.2
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 6.2e-73 278.5 247 55.1
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 4.4e-71 272.3 254 54.3
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 2.0e-68 263.5 219 57.1
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 7.8e-68 261.5 289 48.1
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 9.8e-63 244.6 225 52.4
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 3.7e-62 242.7 276 48.2
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 9.5e-58 228.0 238 50.4
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 3.6e-57 226.1 143 72.7
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 9.9e-55 218.0 228 47.4
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 4.3e-50 202.6 190 56.3
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 2.3e-43 180.3 158 57.6
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 1.6e-36 157.5 286 33.9
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 3.1e-32 143.3 127 52.0
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.5e-31 141.0 88 79.5
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 3.9e-27 126.3 236 31.8
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 3.2e-21 106.7 166 35.5
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 4.2e-21 106.3 76 65.8
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 2.5e-18 97.1 161 33.5
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 2.1e-17 94.0 54 75.9
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 3.7e-17 93.2 49 91.8
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.8e-16 90.9 106 47.2
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 2.5e-13 80.5 41 82.9
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 3.9e-11 73.2 68 52.9
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 3.8e-06 56.6 37 59.5


User provided reference genes

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