Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 5.4e-83 311.2 190 100.0
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.2e-29 134.0 191 58.6
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 5.3e-22 108.6 158 49.4
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 1.2e-21 107.5 89 62.9
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 1.5e-21 107.1 72 72.2
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 1.5e-21 107.1 68 76.5
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 2.0e-21 106.7 93 61.3
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.6e-21 106.3 92 62.0
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 1.0e-20 104.4 88 64.8
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 1.0e-20 104.4 88 64.8
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 1.0e-20 104.4 88 64.8
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 2.2e-20 103.2 53 86.8
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 2.9e-20 102.8 97 58.8
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 3.8e-20 102.4 88 62.5
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 3.8e-20 102.4 88 62.5
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 3.8e-20 102.4 90 63.3
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 5.0e-20 102.1 104 57.7
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.1e-19 100.9 86 65.1
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.1e-19 100.9 90 62.2
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.1e-19 100.9 95 63.2
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 1.4e-19 100.5 144 48.6
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 1.4e-19 100.5 80 67.5
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 1.4e-19 100.5 144 48.6
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 1.4e-19 100.5 144 48.6
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 1.4e-19 100.5 80 67.5
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 1.4e-19 100.5 89 61.8
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.9e-19 100.1 94 61.7
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.5e-19 99.8 92 63.0
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.5e-19 98.6 92 62.0
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.5e-19 98.6 95 62.1
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 7.2e-19 98.2 53 81.1
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 9.4e-19 97.8 91 60.4
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 9.4e-19 97.8 73 75.3
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 9.4e-19 97.8 62 74.2
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.2e-18 97.4 125 52.8
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.1e-18 96.7 89 61.8
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 3.6e-18 95.9 74 70.3
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 6.1e-18 95.1 105 55.2
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 1.0e-17 94.4 90 66.7
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.0e-17 94.4 113 50.4
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 1.0e-17 94.4 105 52.4
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 2.3e-17 93.2 70 72.9
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 2.3e-17 93.2 53 79.2
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 3.0e-17 92.8 53 79.2
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 3.0e-17 92.8 84 64.3
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 5.1e-17 92.0 110 52.7
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 6.7e-17 91.7 72 72.2
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 8.8e-17 91.3 89 59.6
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 8.8e-17 91.3 50 80.0
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 1.1e-16 90.9 78 66.7
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 1.1e-16 90.9 45 88.9
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 1.5e-16 90.5 96 56.2
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.5e-16 89.7 69 72.5
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.5e-16 89.7 69 72.5
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.3e-16 89.4 59 76.3
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 3.3e-16 89.4 84 63.1
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 7.4e-16 88.2 96 59.4
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 7.4e-16 88.2 87 57.5
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 7.4e-16 88.2 50 86.0
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 9.7e-16 87.8 92 58.7
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 1.3e-15 87.4 87 56.3
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.3e-15 87.4 94 55.3
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 1.7e-15 87.0 107 54.2
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 3.7e-15 85.9 91 56.0
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 3.7e-15 85.9 66 68.2
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 4.8e-15 85.5 72 69.4
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 6.3e-15 85.1 93 59.1
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 8.2e-15 84.7 79 77.2
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 8.2e-15 84.7 66 72.7
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.1e-14 84.3 85 56.5
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.4e-14 84.0 104 52.9
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 1.4e-14 84.0 89 55.1
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 1.4e-14 84.0 53 77.4
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 1.8e-14 83.6 104 51.0
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 1.8e-14 83.6 84 57.1
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.4e-14 83.2 117 47.0
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 2.4e-14 83.2 116 49.1
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 2.4e-14 83.2 108 48.1
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 4.1e-14 82.4 78 61.5
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 4.1e-14 82.4 65 72.3
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 5.3e-14 82.0 161 39.8
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 5.3e-14 82.0 57 70.2
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 6.9e-14 81.6 50 80.0
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 9.1e-14 81.3 80 53.8
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 1.2e-13 80.9 98 54.1
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.5e-13 80.5 50 80.0
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 2.0e-13 80.1 120 57.5
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 2.6e-13 79.7 75 58.7
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 4.5e-13 79.0 59 69.5
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 5.9e-13 78.6 67 59.7
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 7.7e-13 78.2 46 73.9
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 1.0e-12 77.8 121 56.2
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 1.3e-12 77.4 80 55.0
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.7e-12 77.0 89 55.1
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.7e-12 77.0 78 55.1
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 2.9e-12 76.3 78 53.8
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 2.9e-12 76.3 99 48.5
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 2.9e-12 76.3 68 63.2
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 2.9e-12 76.3 127 55.1
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 3.8e-12 75.9 76 56.6
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 3.8e-12 75.9 67 64.2
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 3.8e-12 75.9 39 82.1
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 5.0e-12 75.5 104 61.5
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 6.5e-12 75.1 80 62.5
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 6.5e-12 75.1 50 70.0
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 6.5e-12 75.1 53 69.8
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 6.5e-12 75.1 96 44.8
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.1e-11 74.3 55 70.9
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 1.1e-11 74.3 76 76.3
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 1.9e-11 73.6 87 54.0
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 1.9e-11 73.6 77 53.2
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 2.5e-11 73.2 185 45.4
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 2.5e-11 73.2 39 84.6
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 2.5e-11 73.2 78 53.8
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 4.2e-11 72.4 120 44.2
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 7.2e-11 71.6 38 81.6
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 7.2e-11 71.6 38 81.6
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 7.2e-11 71.6 65 61.5
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 9.4e-11 71.2 35 82.9
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.2e-10 70.9 135 48.1
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 2.1e-10 70.1 35 82.9
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 2.7e-10 69.7 35 85.7
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 3.6e-10 69.3 73 57.5
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 6.1e-10 68.6 58 56.9
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 6.1e-10 68.6 36 83.3
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 7.9e-10 68.2 37 78.4
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 1.4e-09 67.4 86 47.7
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 5.1e-09 65.5 84 48.8
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 1.4e-06 57.4 42 71.4
MCO01G216 Micromonas commoda HOM05D005853 ORTHO05D007308 9.1e-06 54.7 106 33.0


User provided reference genes

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