Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 2.5e-159 565.5 294 100.0
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 4.3e-95 352.1 198 87.4
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 8.3e-91 337.8 199 85.9
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 1.1e-79 300.8 198 75.8
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 9.5e-79 297.7 200 74.5
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 1.2e-78 297.4 198 73.7
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.2e-78 297.4 198 75.8
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.1e-77 294.3 184 81.5
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 5.2e-77 292.0 198 72.7
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 5.2e-77 292.0 198 72.7
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 1.5e-76 290.4 198 71.7
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 2.6e-76 289.7 198 71.7
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 9.9e-76 287.7 198 70.7
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 1.7e-75 287.0 198 70.7
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 7.1e-74 281.6 196 70.4
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 7.8e-73 278.1 209 67.0
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 1.0e-72 277.7 200 69.5
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.3e-72 277.3 198 68.2
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.7e-72 276.9 198 68.7
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 3.9e-72 275.8 204 68.1
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 5.1e-72 275.4 200 68.5
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 5.1e-72 275.4 204 68.6
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 5.1e-72 275.4 207 66.2
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 6.6e-72 275.0 204 68.1
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 8.6e-72 274.6 198 70.2
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 1.1e-71 274.2 200 69.0
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 1.9e-71 273.5 198 69.2
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 1.2e-70 270.8 199 66.8
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 2.8e-70 269.6 197 68.5
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 3.6e-70 269.2 194 68.6
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 6.2e-70 268.5 200 68.5
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 1.1e-69 267.7 200 67.0
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.8e-69 266.9 198 65.7
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 8.9e-69 264.6 197 65.5
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 1.5e-68 263.8 200 67.0
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 1.5e-68 263.8 200 65.5
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 2.0e-68 263.5 199 67.3
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 3.4e-68 262.7 198 65.2
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 9.9e-68 261.2 199 66.8
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.3e-67 260.8 189 68.8
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.7e-67 260.4 197 66.5
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 2.9e-67 259.6 197 67.0
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 3.8e-67 259.2 196 66.3
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 4.9e-67 258.8 198 65.7
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 4.9e-67 258.8 197 66.0
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 8.4e-67 258.1 198 63.1
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.1e-66 257.7 198 64.6
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 1.4e-66 257.3 198 64.1
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.9e-66 256.9 197 67.0
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.9e-66 256.9 193 66.8
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 2.4e-66 256.5 191 68.1
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 2.4e-66 256.5 197 65.5
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 3.2e-66 256.1 198 65.7
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 3.2e-66 256.1 199 64.8
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 2.7e-65 253.1 197 65.0
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.7e-65 253.1 197 65.5
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 7.8e-65 251.5 198 64.1
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 7.8e-65 251.5 198 64.1
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.3e-64 250.8 196 63.8
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 3.0e-64 249.6 198 65.2
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 3.0e-64 249.6 185 68.1
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 3.9e-64 249.2 198 65.7
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 3.9e-64 249.2 196 64.8
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 5.1e-64 248.8 195 64.6
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 6.6e-64 248.4 209 61.7
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 6.6e-64 248.4 192 66.7
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 8.7e-64 248.1 206 60.7
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 8.7e-64 248.1 196 64.8
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 3.3e-63 246.1 206 60.7
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 4.3e-63 245.7 198 65.2
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 5.6e-63 245.4 198 63.1
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 5.6e-63 245.4 198 61.6
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 1.6e-62 243.8 198 61.6
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 1.6e-62 243.8 200 63.0
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.1e-61 241.1 200 63.5
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 1.4e-61 240.7 198 63.1
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 2.4e-61 240.0 190 61.6
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 4.0e-61 239.2 211 60.2
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 5.3e-61 238.8 216 58.8
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 1.5e-60 237.3 190 63.7
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 2.6e-60 236.5 196 61.2
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 4.5e-60 235.7 211 58.8
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 5.8e-60 235.3 190 63.2
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 9.9e-60 234.6 216 58.8
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 4.9e-59 232.3 203 61.6
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 1.1e-58 231.1 192 63.5
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.4e-58 230.7 188 67.6
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 1.9e-58 230.3 199 58.3
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 4.2e-58 229.2 170 66.5
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 7.1e-58 228.4 198 60.6
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 3.5e-57 226.1 177 63.8
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 4.6e-57 225.7 257 50.6
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 4.6e-57 225.7 199 57.3
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 6.0e-57 225.3 198 60.1
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 7.9e-57 224.9 198 60.1
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 7.9e-57 224.9 200 59.0
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 1.3e-56 224.2 199 59.8
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 3.9e-56 222.6 193 60.1
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 6.7e-56 221.9 199 58.3
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 8.7e-56 221.5 199 58.3
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 2.5e-55 219.9 198 59.6
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 4.3e-55 219.2 199 56.8
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 7.4e-55 218.4 198 59.1
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 7.4e-55 218.4 198 59.1
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 1.6e-54 217.2 198 58.6
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 1.6e-54 217.2 197 59.4
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.1e-54 216.9 157 69.4
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 2.1e-54 216.9 198 58.6
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 1.4e-53 214.2 198 58.1
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.4e-53 214.2 299 43.5
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 5.3e-53 212.2 198 56.1
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.5e-52 210.7 198 57.6
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 3.4e-52 209.5 199 57.8
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 1.7e-51 207.2 199 55.3
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 1.1e-50 204.5 201 54.7
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.9e-50 203.8 202 54.5
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 4.6e-49 199.1 200 54.5
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 7.4e-47 191.8 208 51.4
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 4.8e-46 189.1 186 61.3
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.8e-45 187.2 199 50.8
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 4.0e-45 186.0 198 51.5
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 1.1e-42 177.9 188 52.1
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 1.4e-42 177.6 167 55.7
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 2.5e-42 176.8 127 65.4
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 3.5e-41 172.9 183 54.6
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 3.5e-41 172.9 183 54.6
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 6.0e-41 172.2 175 56.0
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 5.1e-40 169.1 166 54.2
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 1.7e-35 154.1 159 52.2
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 5.5e-34 149.1 158 46.8
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 6.9e-29 132.1 100 65.0
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.5e-28 131.0 100 65.0
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.4e-28 129.8 101 63.4
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 7.7e-28 128.6 96 65.6
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 1.0e-27 128.3 127 52.0
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 1.0e-27 128.3 123 49.6
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 1.9e-26 124.0 99 65.7
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 9.4e-26 121.7 125 50.4
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 1.8e-24 117.5 143 51.7
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 3.0e-24 116.7 117 55.6
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 3.0e-24 116.7 102 52.9
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 3.9e-24 116.3 104 61.5
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 1.1e-23 114.8 217 34.1
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.3e-22 111.3 117 52.1
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 1.7e-22 110.9 117 51.3
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 9.1e-21 105.1 155 40.6
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 7.2e-18 95.5 125 42.4
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 3.6e-17 93.2 97 53.6
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 2.2e-14 84.0 65 64.6
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 3.7e-14 83.2 175 34.3
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 4.1e-13 79.7 65 63.1
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 3.5e-12 76.6 123 38.2
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.5e-12 76.3 67 65.7
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 5.0e-11 72.8 101 43.6
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 8.5e-11 72.0 63 77.8
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 1.9e-10 70.9 57 66.7
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 1.9e-10 70.9 45 71.1
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 1.8e-08 64.3 66 56.1


User provided reference genes

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