Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 1.9e-267 926.0 800 100.0
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 1.3e-141 508.1 867 67.4
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 6.7e-135 485.7 518 96.7
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 7.4e-126 455.7 845 66.0
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 1.6e-88 331.6 618 67.3
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 2.4e-76 291.2 276 63.4
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 9.2e-76 289.3 231 70.6
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 3.5e-75 287.3 282 62.4
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 1.5e-73 282.0 281 61.2
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 3.3e-73 280.8 300 57.7
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 1.2e-72 278.9 277 62.1
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 3.1e-71 274.2 946 48.2
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 5.2e-71 273.5 280 60.0
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 2.0e-70 271.6 278 57.2
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 2.6e-70 271.2 272 59.9
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 3.4e-70 270.8 278 60.4
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 7.6e-70 269.6 231 67.5
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 2.9e-69 267.7 286 58.4
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 3.8e-69 267.3 280 57.9
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 3.8e-69 267.3 280 57.9
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 3.8e-69 267.3 234 65.4
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 4.9e-69 266.9 274 62.0
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 2.4e-68 264.6 277 60.3
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 4.2e-68 263.8 279 64.2
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 4.2e-68 263.8 284 61.6
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 7.1e-68 263.1 278 61.2
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 1.2e-67 262.3 274 58.8
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.2e-67 262.3 234 65.0
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.6e-67 261.9 282 63.8
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 4.6e-67 260.4 228 66.2
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 6.0e-67 260.0 278 57.6
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 7.8e-67 259.6 263 63.5
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 7.8e-67 259.6 279 58.8
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 1.0e-66 259.2 277 58.8
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.3e-66 258.8 287 60.3
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 2.3e-66 258.1 271 61.6
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.3e-66 258.1 271 60.9
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.9e-66 257.3 270 61.5
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 1.1e-65 255.8 279 59.5
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.1e-65 255.8 287 59.9
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 1.5e-65 255.4 289 57.1
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 1.5e-65 255.4 280 61.4
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 2.5e-65 254.6 231 62.3
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 3.3e-65 254.2 274 60.9
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 3.3e-65 254.2 295 54.6
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 4.3e-65 253.8 231 64.9
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 4.3e-65 253.8 276 57.2
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 5.6e-65 253.4 279 55.2
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 7.3e-65 253.1 278 58.6
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 7.3e-65 253.1 222 64.0
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 1.3e-64 252.3 231 61.5
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 1.6e-64 251.9 281 61.9
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 2.1e-64 251.5 282 57.4
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 2.1e-64 251.5 277 56.7
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 2.8e-64 251.1 277 57.8
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.1e-63 249.2 267 57.7
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.4e-63 248.8 276 57.2
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 1.8e-63 248.4 277 54.5
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 2.4e-63 248.1 276 60.1
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 4.0e-63 247.3 287 60.3
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 9.0e-63 246.1 273 56.4
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 1.2e-62 245.7 231 60.6
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.0e-62 245.0 227 64.3
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 3.4e-62 244.2 222 63.5
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 3.4e-62 244.2 200 66.0
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 4.4e-62 243.8 252 57.5
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 7.6e-62 243.0 276 54.7
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 2.2e-61 241.5 261 57.1
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 2.2e-61 241.5 231 63.6
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 2.9e-61 241.1 279 55.2
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 2.9e-61 241.1 214 64.0
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 3.8e-61 240.7 278 57.2
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 3.8e-61 240.7 233 60.9
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 8.4e-61 239.6 233 60.1
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 8.4e-61 239.6 233 59.2
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 1.4e-60 238.8 270 57.4
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 2.4e-60 238.0 288 56.6
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 2.4e-60 238.0 883 47.9
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 5.4e-60 236.9 161 75.8
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 9.3e-60 236.1 214 64.5
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 9.3e-60 236.1 164 76.2
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 2.3e-58 231.5 239 60.3
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 3.0e-58 231.1 282 54.6
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 1.5e-57 228.8 274 58.4
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.9e-57 228.4 915 49.7
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 3.3e-57 227.6 264 56.8
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 4.3e-57 227.3 275 56.0
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 5.6e-57 226.9 278 56.5
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 7.3e-57 226.5 135 84.4
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 7.3e-57 226.5 276 53.3
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 1.3e-56 225.7 212 61.8
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 2.1e-56 224.9 137 84.7
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 1.1e-55 222.6 240 58.3
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 1.1e-55 222.6 146 77.4
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 3.1e-55 221.1 303 51.8
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 1.5e-54 218.8 284 52.8
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 2.0e-54 218.4 140 79.3
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 7.6e-54 216.5 275 52.7
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 1.3e-53 215.7 230 57.8
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.3e-53 215.7 271 53.5
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.3e-53 215.7 271 53.5
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 1.1e-52 212.6 277 54.9
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 1.4e-52 212.2 219 60.3
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 7.1e-52 209.9 217 57.1
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 2.7e-51 208.0 205 59.5
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.5e-51 207.6 279 55.2
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 1.0e-50 206.1 257 58.0
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 2.5e-49 201.4 131 75.6
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 3.3e-49 201.1 257 50.2
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 1.4e-47 195.7 166 63.3
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 1.5e-46 192.2 134 73.9
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 8.4e-45 186.4 181 58.6
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 4.6e-43 180.6 186 57.5
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 1.1e-41 176.0 124 72.6
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 2.6e-38 164.9 228 50.4
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 2.7e-35 154.8 145 59.3
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 1.0e-34 152.9 231 45.0
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 8.7e-34 149.8 201 52.2
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 2.5e-33 148.3 131 62.6
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 5.9e-30 137.1 134 60.4
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 4.6e-27 127.5 125 57.6
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 1.8e-26 125.6 180 46.7
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 4.3e-25 120.9 128 53.1
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 5.9e-22 110.5 140 48.6
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 1.0e-18 99.8 90 65.6
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 2.8e-16 91.7 81 64.2
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 2.9e-13 81.6 62 69.4
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 2.6e-09 68.6 105 37.1
Lsat_1_v5_gn_9_24840 Lactuca sativa HOM05D005166 ORTHO05D230607 3.5e-06 58.2 44 75.0
RcHm_v2.0_Chr1g0354421 Rosa chinensis HOM05D005166 ORTHO05D006120 7.7e-06 57.0 53 56.6
RcHm_v2.0_Chr1g0367371 Rosa chinensis HOM05D005166 ORTHO05D006120 7.7e-06 57.0 53 56.6


User provided reference genes

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