Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 1.4e-149 533.9 521 100.0
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 3.4e-135 486.1 518 96.7
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 4.1e-109 399.4 287 81.2
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 7.1e-101 372.1 288 77.8
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 6.8e-88 328.9 246 77.2
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 6.6e-75 285.8 290 62.1
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 7.3e-74 282.3 289 60.6
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 2.8e-73 280.4 244 66.8
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 1.1e-72 278.5 295 59.7
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 4.5e-71 273.1 294 58.5
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 9.9e-71 271.9 313 55.3
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 3.8e-70 270.0 290 59.3
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 1.6e-68 264.6 287 58.5
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 1.6e-68 264.6 293 57.3
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 6.0e-68 262.7 291 54.6
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 1.0e-67 261.9 291 57.7
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.0e-67 261.9 285 57.2
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 2.3e-67 260.8 244 63.9
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 8.7e-67 258.8 299 55.9
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 1.1e-66 258.5 293 55.3
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 1.1e-66 258.5 293 55.3
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 1.1e-66 258.5 247 61.9
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 1.5e-66 258.1 287 59.2
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 2.5e-66 257.3 245 63.3
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 7.4e-66 255.8 290 57.6
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 1.3e-65 255.0 292 61.3
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 1.3e-65 255.0 297 58.9
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 2.1e-65 254.2 291 58.4
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 3.7e-65 253.4 287 56.1
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 4.8e-65 253.1 295 61.0
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 4.8e-65 253.1 247 61.5
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 1.4e-64 251.5 241 62.7
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 1.8e-64 251.1 291 55.0
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 2.4e-64 250.8 276 60.5
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 2.4e-64 250.8 292 56.2
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 3.1e-64 250.4 290 56.2
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 4.0e-64 250.0 300 57.7
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 6.9e-64 249.2 284 58.8
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 9.0e-64 248.8 284 58.1
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.2e-63 248.4 283 58.7
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 3.4e-63 246.9 292 56.8
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.4e-63 246.9 300 57.3
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 4.5e-63 246.5 302 54.6
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 4.5e-63 246.5 293 58.7
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 7.6e-63 245.7 244 59.0
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 1.0e-62 245.4 287 58.2
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 1.0e-62 245.4 308 52.3
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 1.3e-62 245.0 244 61.5
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 1.3e-62 245.0 289 54.7
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.7e-62 244.6 292 52.7
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 2.2e-62 244.2 291 56.0
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 2.2e-62 244.2 235 60.4
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 3.8e-62 243.4 244 58.2
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 4.9e-62 243.0 294 59.2
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 6.5e-62 242.7 295 54.9
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 8.4e-62 242.3 290 54.1
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 1.1e-61 241.9 290 55.2
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 3.2e-61 240.4 278 57.2
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 3.2e-61 240.4 280 55.0
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 4.2e-61 240.0 289 54.7
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 5.5e-61 239.6 290 52.1
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 7.1e-61 239.2 289 57.4
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.2e-60 238.4 300 57.7
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 2.7e-60 237.3 286 53.8
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 3.5e-60 236.9 244 57.4
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 6.0e-60 236.1 240 60.8
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 1.0e-59 235.3 235 60.0
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 1.0e-59 235.3 213 62.0
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 1.3e-59 235.0 265 54.7
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 2.3e-59 234.2 289 52.2
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 6.7e-59 232.6 274 54.4
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 6.7e-59 232.6 244 60.2
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 8.7e-59 232.3 292 52.7
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 8.7e-59 232.3 227 60.4
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 1.1e-58 231.9 246 57.7
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 2.5e-58 230.7 246 56.9
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 2.5e-58 230.7 246 56.1
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 5.7e-58 229.6 283 54.8
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 7.4e-58 229.2 301 54.2
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 1.6e-57 228.0 174 70.1
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 2.8e-57 227.3 227 60.8
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 2.8e-57 227.3 177 70.6
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 6.9e-56 222.6 252 57.1
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 9.0e-56 222.2 295 52.2
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 4.5e-55 219.9 287 55.7
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 1.0e-54 218.8 277 54.2
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.3e-54 218.4 288 53.5
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 1.7e-54 218.0 291 54.0
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 2.2e-54 217.6 148 77.0
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 2.2e-54 217.6 289 50.9
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 3.8e-54 216.9 225 58.2
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 6.5e-54 216.1 150 77.3
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 3.2e-53 213.8 253 55.3
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 3.2e-53 213.8 159 71.1
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 9.3e-53 212.2 316 49.7
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 4.6e-52 209.9 297 50.5
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 6.1e-52 209.5 153 72.5
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 2.3e-51 207.6 288 50.3
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 3.0e-51 207.2 204 59.8
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 3.9e-51 206.8 243 54.7
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.9e-51 206.8 284 51.1
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.9e-51 206.8 284 51.1
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 6.7e-51 206.1 257 58.0
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 3.3e-50 203.8 290 52.4
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 4.3e-50 203.4 232 56.9
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 2.2e-49 201.1 230 53.9
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.1e-48 198.7 292 52.7
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 7.7e-47 192.6 144 68.8
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 1.0e-46 192.2 270 47.8
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 4.2e-45 186.8 179 58.7
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 2.7e-44 184.1 178 59.0
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 4.6e-44 183.3 147 67.3
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 7.4e-42 176.0 124 72.6
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.4e-40 171.8 199 53.8
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 1.7e-38 164.9 228 50.4
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 1.8e-35 154.8 145 59.3
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 5.7e-34 149.8 201 52.2
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 1.7e-33 148.3 131 62.6
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 3.1e-32 144.1 244 42.6
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 5.0e-30 136.7 134 60.4
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 3.0e-27 127.5 125 57.6
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 1.1e-24 119.0 126 53.2
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 5.3e-24 116.7 193 43.5
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 5.0e-22 110.2 140 48.6
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 6.8e-19 99.8 90 65.6
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 1.8e-16 91.7 81 64.2
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 1.9e-13 81.6 62 69.4
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 2.2e-09 68.2 105 37.1
RcHm_v2.0_Chr1g0354421 Rosa chinensis HOM05D005166 ORTHO05D006120 5.0e-06 57.0 53 56.6
RcHm_v2.0_Chr1g0367371 Rosa chinensis HOM05D005166 ORTHO05D006120 5.0e-06 57.0 53 56.6


User provided reference genes

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