Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 4.0e-205 718.0 398 100.0
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 2.0e-108 396.7 422 59.7
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 7.6e-63 245.4 398 49.5
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 3.2e-29 133.7 472 31.6
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 2.1e-28 131.0 485 29.7
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 4.4e-26 123.2 480 31.5
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 9.7e-26 122.1 424 32.5
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 3.7e-25 120.2 473 31.1
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 8.2e-25 119.0 428 31.5
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 4.1e-24 116.7 486 29.2
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 9.1e-24 115.5 442 32.4
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 9.1e-24 115.5 424 32.3
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.6e-23 114.8 431 31.1
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 2.0e-23 114.4 455 31.9
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 2.0e-23 114.4 448 31.5
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 2.6e-23 114.0 482 30.1
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 2.6e-23 114.0 419 31.0
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 4.5e-23 113.2 465 32.0
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.9e-22 110.5 460 31.3
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 3.8e-22 110.2 434 30.6
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 3.2e-21 107.1 439 30.1
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 3.2e-21 107.1 448 29.5
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 7.2e-21 105.9 439 31.4
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 9.4e-21 105.5 428 30.8
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.1e-20 104.4 457 30.2
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.7e-20 104.0 340 34.4
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 2.7e-20 104.0 421 29.5
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.7e-20 104.0 439 31.2
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 3.6e-20 103.6 454 30.4
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 4.7e-20 103.2 428 31.1
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 8.0e-20 102.4 459 29.2
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 1.0e-19 102.1 425 30.8
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 1.4e-19 101.7 480 29.8
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.4e-19 101.7 451 29.5
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 1.8e-19 101.3 444 29.7
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 1.8e-19 101.3 471 27.0
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 1.8e-19 101.3 203 40.9
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 4.0e-19 100.1 476 28.8
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 5.2e-19 99.8 405 29.6
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 6.7e-19 99.4 442 28.1
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 2.0e-18 97.8 456 29.8
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 2.0e-18 97.8 480 28.3
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 7.5e-18 95.9 433 28.4
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 7.5e-18 95.9 456 29.4
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 9.7e-18 95.5 400 31.8
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 1.3e-17 95.1 451 28.8
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 1.3e-17 95.1 420 30.7
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 1.7e-17 94.7 428 29.9
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 2.2e-17 94.4 464 28.7
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.8e-17 94.0 475 29.5
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 4.8e-17 93.2 426 27.9
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 6.3e-17 92.8 377 31.6
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 6.3e-17 92.8 433 28.2
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 8.2e-17 92.4 465 28.4
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 8.2e-17 92.4 188 38.3
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 8.2e-17 92.4 504 27.2
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 1.1e-16 92.0 420 28.3
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 1.1e-16 92.0 477 28.9
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 1.1e-16 92.0 413 27.8
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 1.4e-16 91.7 424 28.1
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.8e-16 91.3 445 27.4
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 2.4e-16 90.9 439 28.7
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 5.3e-16 89.7 420 27.9
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 7.0e-16 89.4 418 28.7
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 1.2e-15 88.6 422 28.9
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 1.2e-15 88.6 433 28.6
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 1.6e-15 88.2 336 28.9
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 2.7e-15 87.4 463 28.7
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 2.7e-15 87.4 514 25.3
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 2.7e-15 87.4 411 27.7
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 4.5e-15 86.7 423 27.7
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 7.7e-15 85.9 192 36.5
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 7.7e-15 85.9 480 27.3
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 1.0e-14 85.5 217 36.4
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.3e-14 85.1 481 27.7
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 1.7e-14 84.7 390 28.2
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 2.9e-14 84.0 435 28.0
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 2.9e-14 84.0 435 28.0
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 5.0e-14 83.2 379 30.1
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 5.0e-14 83.2 379 30.1
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 5.0e-14 83.2 196 37.2
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 6.5e-14 82.8 465 28.8
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 6.5e-14 82.8 444 26.8
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 6.5e-14 82.8 390 27.9
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 6.5e-14 82.8 198 37.9
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 8.5e-14 82.4 425 27.8
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 8.5e-14 82.4 420 28.1
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 8.5e-14 82.4 468 26.5
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 1.1e-13 82.0 205 35.6
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 1.1e-13 82.0 408 25.5
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 1.5e-13 81.6 420 28.6
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 1.5e-13 81.6 432 27.3
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 2.5e-13 80.9 418 30.1
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 4.2e-13 80.1 449 28.7
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 4.2e-13 80.1 421 28.5
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 4.2e-13 80.1 393 30.3
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 5.5e-13 79.7 455 27.5
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 9.4e-13 79.0 385 28.8
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 9.4e-13 79.0 385 28.8
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 9.4e-13 79.0 393 29.0
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 9.4e-13 79.0 435 29.9
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 2.7e-12 77.4 391 28.6
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 4.7e-12 76.6 433 27.5
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 4.7e-12 76.6 428 26.4
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 4.7e-12 76.6 405 28.1
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 4.7e-12 76.6 447 27.7
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 6.1e-12 76.3 185 35.7
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 1.0e-11 75.5 289 32.5
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 2.3e-11 74.3 352 30.1
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 2.3e-11 74.3 405 26.2
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 3.0e-11 73.9 350 28.0
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 3.0e-11 73.9 434 28.1
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 8.8e-11 72.4 418 27.8
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 8.8e-11 72.4 176 39.2
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 8.8e-11 72.4 495 25.3
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 1.2e-10 72.0 388 27.3
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.2e-10 72.0 329 28.3
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 2.6e-10 70.9 385 27.8
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 2.6e-10 70.9 385 27.8
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 3.4e-10 70.5 381 27.3
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 5.7e-10 69.7 385 27.8
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 7.5e-10 69.3 208 33.2
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 7.5e-10 69.3 389 30.1
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 9.8e-10 68.9 437 27.5
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 1.7e-09 68.2 386 26.2
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 2.2e-09 67.8 439 26.2
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 6.3e-09 66.2 387 29.2
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 6.3e-09 66.2 84 45.2
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 1.1e-08 65.5 187 32.1
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.1e-08 65.5 484 23.6
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 1.4e-08 65.1 385 26.2
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 1.8e-08 64.7 184 32.6
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 5.4e-08 63.2 59 47.5
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 1.2e-07 62.0 83 49.4
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 1.6e-07 61.6 377 27.6
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 2.0e-07 61.2 448 25.7
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 2.7e-07 60.8 201 31.8
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 2.7e-07 60.8 300 28.0
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 7.7e-07 59.3 183 31.7
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 1.7e-06 58.2 396 26.5
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 3.8e-06 57.0 337 27.9
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 5.0e-06 56.6 376 25.3


User provided reference genes

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