Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 2.5e-167 592.0 297 100.0
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.6e-94 350.1 200 86.5
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 2.8e-94 349.4 197 86.8
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 8.4e-83 311.2 212 70.3
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 7.1e-82 308.1 199 75.4
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 2.3e-80 303.1 196 71.9
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 2.3e-80 303.1 199 72.9
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 3.9e-80 302.4 197 72.6
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 3.9e-80 302.4 214 68.7
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 6.7e-80 301.6 197 72.6
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.1e-79 300.8 224 66.1
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 1.9e-79 300.1 199 70.4
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 5.6e-79 298.5 199 69.8
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 7.4e-79 298.1 199 70.4
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 9.6e-79 297.7 196 71.4
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 1.3e-78 297.4 224 65.6
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.1e-78 296.6 198 70.2
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.1e-78 296.6 198 70.7
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 4.8e-78 295.4 199 70.4
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 6.2e-78 295.0 218 67.0
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 6.2e-78 295.0 197 72.6
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 6.2e-78 295.0 205 67.3
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 6.2e-78 295.0 195 69.2
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 8.2e-78 294.7 199 71.4
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 8.2e-78 294.7 197 72.1
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 8.2e-78 294.7 197 69.5
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 1.4e-77 293.9 197 68.5
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 1.8e-77 293.5 197 70.1
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 2.4e-77 293.1 197 70.6
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 3.1e-77 292.7 231 62.8
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 3.1e-77 292.7 199 68.3
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 3.1e-77 292.7 197 69.5
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 4.0e-77 292.4 197 70.6
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 4.0e-77 292.4 197 69.5
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 4.0e-77 292.4 199 69.8
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 5.3e-77 292.0 197 70.6
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 1.2e-76 290.8 197 70.1
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 1.2e-76 290.8 199 68.3
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 2.0e-76 290.0 197 71.1
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 3.4e-76 289.3 197 70.6
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 4.5e-76 288.9 197 67.5
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 7.6e-76 288.1 195 68.2
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 1.3e-75 287.3 183 76.0
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 2.2e-75 286.6 225 63.6
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 3.8e-75 285.8 199 70.4
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 6.5e-75 285.0 196 68.9
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 8.4e-75 284.6 196 69.4
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.1e-74 284.3 197 67.5
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.1e-74 284.3 197 67.5
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 1.4e-74 283.9 199 67.3
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 1.4e-74 283.9 197 67.5
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 1.4e-74 283.9 195 69.7
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 1.4e-74 283.9 197 67.0
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 1.9e-74 283.5 198 66.7
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 3.2e-74 282.7 197 67.5
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 3.2e-74 282.7 197 67.5
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 3.2e-74 282.7 193 68.9
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 3.2e-74 282.7 198 67.7
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 4.2e-74 282.3 197 67.5
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 4.2e-74 282.3 196 66.8
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 5.5e-74 282.0 197 68.5
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 7.1e-74 281.6 197 68.0
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 7.1e-74 281.6 196 69.9
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 7.1e-74 281.6 197 67.5
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 9.3e-74 281.2 197 68.5
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 9.3e-74 281.2 197 69.0
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 1.6e-73 280.4 199 69.3
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 1.6e-73 280.4 183 73.2
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 2.1e-73 280.0 197 68.0
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 2.1e-73 280.0 189 69.8
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 2.1e-73 280.0 196 66.8
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 2.1e-73 280.0 197 64.5
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 2.7e-73 279.6 197 67.5
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 4.6e-73 278.9 198 68.2
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 4.6e-73 278.9 195 66.2
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 6.0e-73 278.5 214 64.0
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 7.9e-73 278.1 197 67.0
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 1.0e-72 277.7 197 67.5
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.3e-72 277.3 197 67.0
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.3e-72 277.3 197 67.5
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.8e-72 276.9 200 66.5
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 2.3e-72 276.6 194 71.6
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 3.0e-72 276.2 183 71.0
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 6.7e-72 275.0 186 69.4
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 8.7e-72 274.6 197 66.0
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 1.5e-71 273.9 197 66.0
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 1.5e-71 273.9 196 68.4
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 1.5e-71 273.9 197 64.0
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 1.5e-71 273.9 197 67.0
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.5e-71 273.9 197 64.5
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 1.9e-71 273.5 155 91.6
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 3.3e-71 272.7 194 66.5
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 4.3e-71 272.3 197 67.5
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 4.3e-71 272.3 197 69.0
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 7.4e-71 271.6 195 67.7
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 9.7e-71 271.2 184 69.0
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 1.6e-70 270.4 187 70.6
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.6e-70 270.4 197 66.5
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 2.2e-70 270.0 195 66.7
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 2.2e-70 270.0 191 71.7
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 2.8e-70 269.6 199 66.3
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.8e-70 269.6 184 69.0
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 2.8e-70 269.6 184 69.0
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 4.8e-70 268.9 197 63.5
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 6.3e-70 268.5 197 66.5
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 6.3e-70 268.5 197 66.5
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 8.2e-70 268.1 197 66.5
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 3.1e-69 266.2 197 65.0
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 1.2e-68 264.2 196 63.3
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 1.0e-67 261.2 186 67.2
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 3.8e-67 259.2 195 64.6
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 5.0e-67 258.8 197 64.5
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 8.5e-67 258.1 186 66.1
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 1.4e-66 257.3 183 68.9
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 4.2e-66 255.8 179 67.6
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 1.6e-65 253.8 187 64.7
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 2.3e-64 250.0 196 63.3
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 8.2e-62 241.5 166 69.9
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 6.9e-61 238.4 187 60.4
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 1.0e-59 234.6 183 62.8
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 3.6e-57 226.1 144 75.0
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 4.7e-57 225.7 219 53.4
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 5.1e-56 222.2 144 72.2
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 3.7e-54 216.1 167 61.1
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 4.1e-53 212.6 143 69.9
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 9.1e-53 211.5 156 62.8
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 7.7e-52 208.4 199 55.8
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 1.0e-51 208.0 187 53.5
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 1.1e-50 204.5 144 63.9
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 2.5e-50 203.4 191 53.4
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 8.2e-46 188.3 180 50.0
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 2.6e-44 183.3 197 51.8
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 1.0e-43 181.4 114 72.8
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 1.5e-42 177.6 198 49.0
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 5.7e-39 165.6 98 74.5
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 3.1e-37 159.8 123 61.8
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 2.1e-33 147.1 181 47.0
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 3.7e-30 136.3 183 44.8
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 4.1e-29 132.9 67 88.1
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 5.4e-29 132.5 181 38.7
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 1.7e-22 110.9 107 49.5
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 2.4e-21 107.1 72 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 7.0e-21 105.5 118 48.3
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 3.5e-20 103.2 186 34.9
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 1.0e-19 101.7 120 47.5
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.7e-19 100.9 107 49.5
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 7.3e-18 95.5 193 37.3
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 1.6e-17 94.4 70 60.0
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.1e-17 94.0 64 62.5
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.9e-13 80.9 55 72.7
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 2.3e-08 63.9 45 64.4
Cre03.g145427 Chlamydomonas reinhardtii HOM05D037009 ORTHO05D034383 1.3e-06 58.2 132 28.0
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 3.7e-06 56.6 37 70.3
Nn2g15094 Nelumbo nucifera HOM05D004717 ORTHO05D005636 4.9e-06 56.2 39 69.2


User provided reference genes

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