Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 4.4e-299 1030.4 484 100.0
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 3.0e-239 831.6 436 86.7
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 5.7e-238 827.4 504 78.0
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 8.3e-221 770.4 471 76.0
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 5.4e-220 767.7 436 79.4
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 5.4e-220 767.7 435 79.1
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 5.4e-220 767.7 435 79.1
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 7.2e-217 757.3 478 73.4
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 1.0e-215 753.4 429 78.6
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 3.0e-215 751.9 511 70.3
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 4.0e-215 751.5 452 75.9
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 4.0e-215 751.5 429 78.3
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 5.2e-215 751.1 429 78.6
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 3.4e-214 748.4 511 69.9
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.7e-214 747.7 429 77.9
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 1.1e-212 743.4 467 73.0
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 1.1e-212 743.4 428 78.7
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.4e-212 743.0 453 73.7
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 3.1e-212 741.9 478 72.8
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 4.1e-212 741.5 436 76.6
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 9.2e-212 740.3 429 76.9
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 1.2e-211 740.0 482 72.4
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 2.7e-211 738.8 474 72.4
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 4.5e-211 738.0 479 71.8
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 4.5e-211 738.0 448 74.6
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 5.9e-211 737.6 486 68.9
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 1.3e-210 736.5 447 75.2
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 5.0e-210 734.6 435 75.4
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 5.0e-210 734.6 484 70.9
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 5.0e-210 734.6 433 77.1
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.5e-209 733.0 449 73.5
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 1.5e-209 733.0 482 70.3
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 2.5e-209 732.3 470 71.9
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 1.2e-208 729.9 434 76.0
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.6e-208 729.6 429 76.0
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 2.1e-208 729.2 484 70.2
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 2.8e-208 728.8 472 70.3
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 4.7e-208 728.0 480 70.6
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 4.7e-208 728.0 476 70.2
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 6.1e-208 727.6 429 75.8
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 8.0e-208 727.2 440 74.3
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 1.4e-207 726.5 478 70.9
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 2.3e-207 725.7 434 76.3
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 4.0e-207 724.9 427 75.6
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 4.0e-207 724.9 495 69.5
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 6.8e-207 724.2 447 74.3
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 1.2e-206 723.4 467 70.7
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 1.5e-206 723.0 488 68.9
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 1.5e-206 723.0 434 75.8
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.0e-206 722.6 474 71.3
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 2.6e-206 722.2 482 68.9
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 4.4e-206 721.5 427 76.1
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 7.5e-206 720.7 413 78.5
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 7.5e-206 720.7 467 71.1
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 2.9e-205 718.8 467 70.9
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 6.4e-205 717.6 425 76.5
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 1.1e-204 716.8 426 75.6
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 3.2e-204 715.3 429 74.8
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 5.4e-204 714.5 477 68.8
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.2e-203 713.4 504 66.9
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 1.2e-203 713.4 486 68.3
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 6.6e-202 707.6 429 74.6
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 1.1e-201 706.8 473 68.7
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 1.5e-201 706.4 496 67.3
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 4.3e-201 704.9 427 75.2
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 5.6e-201 704.5 473 68.7
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 1.6e-200 703.0 474 68.1
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 1.1e-199 700.3 483 67.7
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 2.3e-199 699.1 448 73.0
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 6.8e-199 697.6 431 73.1
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 6.8e-199 697.6 430 72.8
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 2.0e-198 696.0 447 70.7
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 3.4e-198 695.3 447 70.7
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 7.5e-198 694.1 435 72.6
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 9.8e-198 693.7 430 72.1
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 9.8e-198 693.7 427 73.3
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 9.8e-198 693.7 481 66.7
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 1.3e-197 693.3 480 66.5
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.7e-197 693.0 433 72.3
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 1.1e-196 690.3 442 71.0
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 1.1e-196 690.3 442 71.0
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 1.6e-195 686.4 435 72.0
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 2.7e-195 685.6 467 69.0
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 3.5e-195 685.3 449 69.3
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 6.0e-195 684.5 462 70.1
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 1.9e-193 679.5 429 74.8
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.2e-192 676.8 476 67.6
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 1.6e-192 676.4 434 71.9
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.2e-190 670.2 523 61.0
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 7.5e-190 667.5 429 68.3
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 2.2e-189 666.0 474 64.6
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.5e-187 658.7 472 62.5
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 3.6e-184 648.7 519 59.3
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 6.2e-184 647.9 380 76.6
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 3.1e-183 645.6 437 65.4
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 2.9e-181 639.0 360 78.1
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 1.6e-179 633.3 362 77.3
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 1.8e-175 619.8 428 66.8
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 2.4e-175 619.4 382 74.3
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 2.4e-175 619.4 382 74.3
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.5e-174 616.7 444 66.0
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.4e-172 609.4 358 76.3
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 1.3e-168 597.0 465 60.6
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 1.6e-168 596.7 350 75.4
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 1.1e-167 594.0 382 73.0
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 2.1e-163 579.7 428 60.5
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.5e-163 578.9 429 63.2
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 3.9e-162 575.5 419 61.3
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 2.6e-158 562.8 410 66.3
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 9.9e-158 560.8 427 64.2
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.3e-157 560.5 327 75.8
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 6.4e-157 558.1 439 57.6
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 8.4e-157 557.8 518 54.4
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 5.1e-146 521.9 428 56.8
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 2.8e-144 516.2 398 57.8
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 6.5e-141 505.0 428 59.8
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 7.7e-134 481.5 323 66.9
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 2.1e-131 473.4 420 53.3
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 3.9e-130 469.2 272 76.5
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.5e-124 448.7 256 78.5
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 3.6e-99 366.3 220 74.5
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 1.2e-97 361.3 456 41.4
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 7.8e-78 295.4 186 72.0
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 4.7e-75 286.2 162 78.4
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 2.9e-72 276.9 426 40.8
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.0e-65 254.2 414 36.7
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.8e-59 233.8 150 69.3
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 8.1e-59 232.3 129 80.6
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.7e-56 224.6 110 85.5
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 2.1e-54 217.6 135 72.6
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 5.3e-42 176.4 150 52.0
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 4.5e-41 173.3 120 69.2
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 9.3e-39 165.6 122 63.1
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 2.4e-34 151.0 111 65.8
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 8.4e-32 142.5 187 44.4
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 6.7e-29 132.9 186 41.4
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.2e-19 101.3 61 72.1
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 1.7e-16 91.7 60 65.0
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 1.9e-07 61.6 41 63.4


User provided reference genes

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