Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 7.1e-147 523.9 254 100.0
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 7.1e-147 523.9 254 100.0
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 7.1e-147 523.9 254 100.0
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 7.1e-147 523.9 254 100.0
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 8.1e-143 510.4 254 97.2
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 2.4e-142 508.8 253 98.0
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 4.9e-140 501.1 254 96.9
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 4.9e-140 501.1 254 96.9
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.9e-140 501.1 254 96.9
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.9e-140 501.1 254 96.9
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.9e-140 501.1 254 96.9
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 4.9e-140 501.1 254 96.9
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 6.4e-140 500.7 254 96.9
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.4e-139 499.6 250 97.2
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.9e-139 499.2 254 96.9
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 3.5e-138 495.0 254 96.5
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 4.6e-138 494.6 253 95.7
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 7.8e-138 493.8 254 95.7
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 1.0e-137 493.4 253 96.0
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 1.0e-137 493.4 254 96.1
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.3e-137 493.0 254 95.7
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 4.3e-136 488.0 253 95.3
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 4.8e-135 484.6 254 94.5
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 4.8e-135 484.6 254 94.5
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 4.8e-135 484.6 254 94.5
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 4.8e-135 484.6 254 94.5
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 4.8e-135 484.6 254 94.5
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 4.8e-135 484.6 254 94.5
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 1.4e-134 483.0 250 95.2
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 1.8e-134 482.6 254 94.1
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 2.4e-134 482.3 250 94.8
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 4.0e-134 481.5 250 94.4
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 5.3e-134 481.1 250 94.0
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 4.4e-133 478.0 250 92.4
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 1.7e-132 476.1 254 93.7
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 1.7e-132 476.1 254 93.7
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 2.2e-132 475.7 253 93.7
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 2.2e-132 475.7 253 92.9
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 3.8e-132 474.9 254 93.3
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 4.9e-132 474.6 254 93.3
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 2.4e-131 472.2 254 92.9
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.7e-130 468.8 250 92.8
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 6.0e-130 467.6 250 92.4
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 4.9e-124 448.0 254 89.8
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 5.1e-121 438.0 255 86.7
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 2.4e-118 429.1 254 86.2
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 7.1e-115 417.5 254 84.3
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 9.3e-115 417.2 254 84.3
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 6.7e-113 411.0 253 83.8
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 2.5e-112 409.1 254 83.9
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 7.4e-112 407.5 248 83.9
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.8e-110 402.9 250 82.8
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 2.4e-110 402.5 245 82.9
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 2.4e-110 402.5 245 82.9
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 1.2e-109 400.2 253 81.8
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 3.4e-109 398.7 250 82.8
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 3.9e-105 385.2 189 97.9
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 1.1e-104 383.6 235 82.6
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.4e-102 376.7 254 77.6
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.4e-101 372.1 254 75.2
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.3e-100 370.2 189 95.8
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.3e-100 370.2 189 95.8
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.3e-100 370.2 189 95.8
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 5.1e-97 358.2 189 93.1
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 7.4e-96 354.4 220 81.4
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 2.0e-93 346.3 234 78.6
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.3e-92 343.6 229 79.5
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.9e-85 318.2 254 69.3
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 3.0e-81 305.8 197 78.7
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 1.9e-75 286.6 147 96.6
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 1.9e-75 286.6 248 63.7
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 7.2e-75 284.6 146 96.6
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 7.2e-75 284.6 155 87.7
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.6e-74 283.5 239 63.2
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.2e-64 250.8 231 62.8
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.3e-60 236.5 118 99.2
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 3.6e-58 229.2 183 67.2
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 1.0e-57 227.6 118 94.9
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 2.0e-56 223.4 235 58.3
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 2.4e-54 216.5 175 66.3
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 1.6e-53 213.8 134 73.9
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 6.8e-49 198.4 105 91.4
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 2.2e-47 193.4 95 96.8
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 6.4e-47 191.8 109 84.4
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.4e-46 190.7 133 76.7
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 1.9e-46 190.3 212 53.3
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 3.2e-46 189.5 94 95.7
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 8.6e-44 181.4 96 95.8
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 3.3e-43 179.5 99 87.9
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 4.7e-42 175.6 249 38.2
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 5.2e-41 172.2 175 53.7
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 6.8e-41 171.8 91 91.2
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 6.8e-41 171.8 111 81.1
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 2.1e-37 160.2 89 86.5
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 5.1e-36 155.6 90 83.3
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.2e-32 144.4 177 52.0
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 1.2e-32 144.4 109 72.5
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 1.2e-32 144.4 189 49.7
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.5e-29 132.9 72 86.1
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 2.9e-23 113.2 107 58.9
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 2.9e-23 113.2 73 78.1
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.9e-22 110.5 64 85.9
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 2.7e-21 106.7 60 85.0
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 7.8e-21 105.1 108 59.3
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 3.0e-20 103.2 57 91.2
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 8.7e-20 101.7 53 86.8
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 5.6e-19 99.0 56 89.3
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 7.3e-19 98.6 64 76.6
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 2.8e-18 96.7 55 90.9
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 8.1e-18 95.1 55 85.5
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 3.1e-17 93.2 65 75.4
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 3.1e-17 93.2 64 75.0
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 2.0e-16 90.5 47 93.6
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 3.4e-16 89.7 74 63.5
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 7.1e-14 82.0 50 82.0
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 9.6e-11 71.6 46 78.3
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 4.0e-09 66.2 55 65.5
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.5e-08 64.3 50 66.0
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 2.2e-07 60.5 39 74.4
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 4.9e-07 59.3 30 93.3


User provided reference genes

Program Settings