Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 3.4e-45 184.5 86 100.0
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 5.5e-35 150.6 81 86.4
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 2.6e-32 141.7 81 81.5
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 3.3e-32 141.4 81 81.5
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 4.8e-31 137.5 81 77.8
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 4.8e-31 137.5 81 79.0
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 3.5e-29 131.3 85 72.9
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 4.5e-29 131.0 81 72.8
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 5.9e-29 130.6 81 72.8
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 1.0e-28 129.8 81 72.8
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 1.0e-28 129.8 81 74.1
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.0e-28 129.8 79 74.7
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 2.2e-28 128.6 81 72.8
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 2.2e-28 128.6 80 75.0
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.2e-28 128.6 81 74.1
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 2.9e-28 128.3 79 74.7
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 2.9e-28 128.3 81 72.8
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 2.9e-28 128.3 81 74.1
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 3.8e-28 127.9 79 73.4
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 3.8e-28 127.9 81 72.8
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 3.8e-28 127.9 81 72.8
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 5.0e-28 127.5 81 71.6
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 5.0e-28 127.5 81 72.8
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 6.5e-28 127.1 79 73.4
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 6.5e-28 127.1 81 71.6
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 6.5e-28 127.1 81 71.6
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 6.5e-28 127.1 79 74.7
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 8.5e-28 126.7 81 71.6
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 8.5e-28 126.7 81 71.6
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 8.5e-28 126.7 79 75.9
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.1e-27 126.3 81 72.8
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 1.1e-27 126.3 81 71.6
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 1.1e-27 126.3 81 71.6
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.1e-27 126.3 79 74.7
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.1e-27 126.3 81 71.6
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 1.5e-27 125.9 81 71.6
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 1.5e-27 125.9 79 73.4
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.5e-27 125.9 79 73.4
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.5e-27 125.9 79 73.4
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 1.5e-27 125.9 79 73.4
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 1.5e-27 125.9 81 71.6
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 1.5e-27 125.9 79 73.4
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.5e-27 125.9 81 70.4
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.5e-27 125.9 81 70.4
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 1.5e-27 125.9 79 74.7
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 1.5e-27 125.9 81 72.8
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.9e-27 125.6 79 73.4
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 1.9e-27 125.6 81 71.6
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 1.9e-27 125.6 81 71.6
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.9e-27 125.6 81 70.4
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.9e-27 125.6 82 72.0
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 2.5e-27 125.2 81 71.6
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 2.5e-27 125.2 81 71.6
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 2.5e-27 125.2 81 72.8
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 3.2e-27 124.8 79 73.4
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 3.2e-27 124.8 79 72.2
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 3.2e-27 124.8 79 72.2
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 3.2e-27 124.8 81 71.6
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 3.2e-27 124.8 79 73.4
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 3.2e-27 124.8 79 72.2
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 3.2e-27 124.8 81 71.6
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 3.2e-27 124.8 79 72.2
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 3.2e-27 124.8 81 70.4
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.2e-27 124.8 81 71.6
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 3.2e-27 124.8 81 71.6
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 4.2e-27 124.4 79 72.2
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 4.2e-27 124.4 81 71.6
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 4.2e-27 124.4 79 72.2
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 4.2e-27 124.4 79 72.2
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 4.2e-27 124.4 81 74.1
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 4.2e-27 124.4 81 70.4
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 5.5e-27 124.0 81 71.6
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 5.5e-27 124.0 81 70.4
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 5.5e-27 124.0 81 70.4
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 5.5e-27 124.0 79 73.4
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 5.5e-27 124.0 79 72.2
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 7.2e-27 123.6 79 72.2
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 7.2e-27 123.6 81 70.4
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 7.2e-27 123.6 81 70.4
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 7.2e-27 123.6 79 72.2
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 7.2e-27 123.6 79 72.2
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 7.2e-27 123.6 80 70.0
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 7.2e-27 123.6 81 70.4
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.2e-27 123.6 79 72.2
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.2e-27 123.6 79 72.2
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 7.2e-27 123.6 82 68.3
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 7.2e-27 123.6 79 68.4
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 7.2e-27 123.6 79 72.2
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 9.4e-27 123.2 79 72.2
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.2e-26 122.9 81 69.1
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.2e-26 122.9 81 69.1
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 1.2e-26 122.9 79 72.2
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.2e-26 122.9 79 72.2
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 1.2e-26 122.9 81 69.1
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 1.2e-26 122.9 79 70.9
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.6e-26 122.5 79 70.9
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 1.6e-26 122.5 81 70.4
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 1.6e-26 122.5 81 70.4
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.6e-26 122.5 81 69.1
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.6e-26 122.5 81 70.4
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 1.6e-26 122.5 81 70.4
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.1e-26 122.1 79 70.9
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.1e-26 122.1 81 69.1
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.1e-26 122.1 79 70.9
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.1e-26 122.1 81 69.1
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.1e-26 122.1 79 70.9
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.1e-26 122.1 81 69.1
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 2.1e-26 122.1 81 70.4
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.1e-26 122.1 79 69.6
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.1e-26 122.1 79 69.6
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.1e-26 122.1 81 69.1
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 2.7e-26 121.7 79 70.9
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 2.7e-26 121.7 79 70.9
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 2.7e-26 121.7 81 70.4
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 2.7e-26 121.7 81 69.1
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 2.7e-26 121.7 79 70.9
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 3.6e-26 121.3 81 67.9
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 4.7e-26 120.9 79 72.2
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 4.7e-26 120.9 81 69.1
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 6.1e-26 120.6 81 69.1
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.1e-26 120.6 79 70.9
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.1e-26 120.6 79 70.9
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 8.0e-26 120.2 81 69.1
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.4e-25 119.4 79 69.6
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 1.8e-25 119.0 76 72.4
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 4.0e-25 117.9 79 69.6
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 5.2e-25 117.5 81 66.7
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 5.2e-25 117.5 79 68.4
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 6.7e-25 117.1 82 65.9
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 6.7e-25 117.1 79 67.1
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 8.8e-25 116.7 79 67.1
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.5e-24 115.9 81 66.7
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 1.5e-24 115.9 79 65.8
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 2.6e-24 115.2 79 65.8
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 3.3e-24 114.8 79 65.8
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 3.3e-24 114.8 93 61.3
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 7.5e-24 113.6 79 68.4
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 7.5e-24 113.6 80 66.2
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 9.7e-24 113.2 79 65.8
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 9.7e-24 113.2 85 62.4
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 9.7e-24 113.2 100 57.0
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 1.3e-23 112.8 79 64.6
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 2.8e-23 111.7 79 65.8
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 2.8e-23 111.7 79 64.6
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 2.8e-23 111.7 79 64.6
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 3.7e-23 111.3 79 63.3
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 4.8e-23 110.9 79 65.8
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 6.3e-23 110.5 79 63.3
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 6.3e-23 110.5 79 63.3
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 6.3e-23 110.5 79 60.8
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 1.4e-22 109.4 79 62.0
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 1.4e-22 109.4 79 62.0
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.0e-21 105.5 115 48.7
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 1.0e-20 103.2 78 64.1
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.7e-20 102.4 69 65.2
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.2e-20 102.1 79 58.2
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 3.4e-16 88.2 48 87.5
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 2.4e-14 82.0 71 47.9
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 5.0e-12 74.3 85 49.4
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 1.2e-10 69.7 38 81.6
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 2.1e-10 68.9 39 82.1
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 6.1e-10 67.4 39 76.9
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 5.7e-08 60.8 41 65.9
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 1.7e-07 59.3 42 61.9
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 3.7e-07 58.2 68 41.2
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 4.9e-07 57.8 72 43.1


User provided reference genes

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