Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 3.4e-89 331.6 168 100.0
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 1.9e-76 289.3 166 88.0
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 1.1e-74 283.5 166 85.5
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.7e-70 268.9 166 81.3
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 6.0e-70 267.7 165 81.8
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 1.8e-69 266.2 166 81.3
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.8e-66 256.1 165 75.8
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 5.3e-66 254.6 165 76.4
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 1.2e-65 253.4 163 75.5
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 1.0e-64 250.4 165 76.4
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 1.4e-63 246.5 165 73.3
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 2.5e-63 245.7 166 73.5
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 7.2e-63 244.2 163 74.2
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 9.3e-63 243.8 149 83.2
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.3e-61 240.0 165 73.3
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.3e-61 240.0 165 73.3
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 1.3e-61 240.0 165 72.1
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 5.1e-61 238.0 166 72.3
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 6.7e-61 237.7 152 77.0
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 1.1e-60 236.9 164 72.0
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 2.5e-60 235.7 166 70.5
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 5.7e-60 234.6 167 71.3
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 5.7e-60 234.6 166 72.9
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 9.7e-60 233.8 163 71.2
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 1.6e-59 233.0 164 72.0
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 1.6e-59 233.0 164 72.0
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 2.2e-59 232.6 165 70.3
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 3.7e-59 231.9 165 70.3
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 6.3e-59 231.1 164 72.0
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 1.4e-58 229.9 164 70.1
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 3.1e-58 228.8 166 71.1
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 1.2e-57 226.9 171 69.0
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.7e-56 223.0 164 69.5
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 2.9e-56 222.2 164 69.5
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 3.8e-56 221.9 170 65.3
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.4e-55 219.9 170 68.2
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 3.2e-55 218.8 173 68.8
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 3.2e-55 218.8 173 68.8
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 3.2e-55 218.8 165 69.1
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 5.5e-55 218.0 170 64.7
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 5.5e-55 218.0 167 69.5
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 7.2e-55 217.6 167 69.5
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 7.2e-55 217.6 165 68.5
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 7.2e-55 217.6 165 69.1
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 7.2e-55 217.6 165 69.1
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 9.4e-55 217.2 171 64.3
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 1.6e-54 216.5 165 68.5
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 1.6e-54 216.5 162 66.7
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 2.7e-54 215.7 170 64.7
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 3.6e-54 215.3 171 66.7
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 6.1e-54 214.5 165 66.1
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 7.9e-54 214.2 171 63.2
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 1.0e-53 213.8 165 68.5
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.0e-53 213.8 165 68.5
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 1.0e-53 213.8 169 62.7
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 1.4e-53 213.4 163 68.1
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 1.8e-53 213.0 166 67.5
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 3.9e-53 211.8 167 68.3
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 3.9e-53 211.8 167 68.3
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 6.7e-53 211.1 165 66.1
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 8.8e-53 210.7 142 75.4
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 8.8e-53 210.7 169 67.5
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 8.8e-53 210.7 165 65.5
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 1.1e-52 210.3 161 68.3
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 2.0e-52 209.5 165 65.5
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 3.3e-52 208.8 167 67.1
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 3.3e-52 208.8 167 67.1
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 3.3e-52 208.8 171 64.9
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 4.3e-52 208.4 167 66.5
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 5.7e-52 208.0 166 67.5
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 5.7e-52 208.0 166 67.5
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 7.4e-52 207.6 166 66.9
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 7.4e-52 207.6 167 67.1
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 7.4e-52 207.6 166 66.9
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 7.4e-52 207.6 166 67.5
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 7.4e-52 207.6 150 70.7
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.3e-51 206.8 166 66.9
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 1.3e-51 206.8 167 67.1
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 1.3e-51 206.8 170 64.7
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 1.3e-51 206.8 166 66.9
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.3e-51 206.8 167 65.9
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 1.7e-51 206.5 167 67.1
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 2.2e-51 206.1 166 66.3
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 2.2e-51 206.1 166 66.3
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 2.2e-51 206.1 166 66.3
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 2.2e-51 206.1 166 66.3
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 2.2e-51 206.1 162 68.5
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 3.7e-51 205.3 167 62.3
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 4.8e-51 204.9 166 65.7
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 6.3e-51 204.5 166 65.7
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 8.2e-51 204.1 169 62.1
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 8.2e-51 204.1 166 65.7
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 1.1e-50 203.8 166 65.7
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 1.1e-50 203.8 164 65.2
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 1.1e-50 203.8 171 63.2
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 1.1e-50 203.8 167 66.5
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 1.4e-50 203.4 166 65.7
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 1.4e-50 203.4 166 65.7
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 1.4e-50 203.4 166 65.7
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 1.4e-50 203.4 170 65.9
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 1.4e-50 203.4 169 66.3
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 1.4e-50 203.4 166 65.7
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 1.4e-50 203.4 163 65.0
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 1.8e-50 203.0 169 65.7
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 2.4e-50 202.6 170 65.9
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 4.1e-50 201.8 167 65.3
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 4.1e-50 201.8 168 66.7
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 4.1e-50 201.8 167 65.9
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 5.3e-50 201.4 167 64.1
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 6.9e-50 201.1 164 64.6
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 6.9e-50 201.1 164 64.6
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 9.1e-50 200.7 169 62.1
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 1.2e-49 200.3 168 63.7
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 1.2e-49 200.3 167 66.5
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.2e-49 200.3 168 64.9
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.2e-49 200.3 166 63.9
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 1.2e-49 200.3 168 64.9
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 1.5e-49 199.9 164 64.0
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.0e-49 199.5 164 64.6
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 4.5e-49 198.4 164 64.0
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 5.9e-49 198.0 168 63.1
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 5.9e-49 198.0 169 64.5
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 5.9e-49 198.0 169 63.9
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 7.7e-49 197.6 168 63.1
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 7.7e-49 197.6 169 63.9
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.0e-48 197.2 167 64.7
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 1.3e-48 196.8 169 63.3
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.7e-48 196.4 167 62.9
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 2.9e-48 195.7 168 60.7
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 2.9e-48 195.7 167 61.1
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 5.0e-48 194.9 169 59.8
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 1.1e-47 193.7 169 62.7
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 1.1e-47 193.7 159 62.9
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 3.2e-47 192.2 169 62.1
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 7.2e-47 191.0 168 60.1
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 1.2e-46 190.3 159 61.6
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.6e-46 189.9 168 60.1
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 1.6e-46 189.9 160 61.2
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 6.1e-46 188.0 158 60.1
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 1.4e-45 186.8 159 61.0
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 3.0e-45 185.7 170 62.4
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 8.8e-45 184.1 157 63.7
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 8.8e-45 184.1 170 60.0
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 8.8e-45 184.1 167 58.1
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 2.6e-44 182.6 170 60.0
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 3.3e-44 182.2 156 60.3
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 3.3e-44 182.2 160 62.5
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 5.7e-44 181.4 168 60.7
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 1.3e-43 180.3 171 59.1
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 9.4e-39 164.1 154 53.2
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 7.5e-36 154.5 166 51.2
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 4.8e-27 125.2 101 62.4
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 2.2e-24 116.3 114 56.1
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 1.5e-23 113.6 154 42.9
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 2.3e-21 106.3 112 54.5
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 5.2e-21 105.1 87 64.4
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 2.0e-20 103.2 149 42.3
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 2.8e-19 99.4 98 57.1
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 1.1e-18 97.4 85 60.0
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 4.4e-12 75.5 85 54.1
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 7.5e-12 74.7 145 38.6
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 2.7e-09 66.2 72 52.8
SHI26932 Sapria himalayana HOM05D009124 ORTHO05D012381 1.5e-07 60.5 67 47.8


User provided reference genes

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