Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0234101 Helianthus annuus HOM05D003993 ORTHO05D005336 0.0e+00 1468.8 748 100.0
ECA236G0263 Erigeron canadensis HOM05D003993 ORTHO05D005336 7.0e-227 791.2 1185 42.8
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 2.0e-226 789.6 1127 45.1
Lsat_1_v5_gn_7_108360 Lactuca sativa HOM05D003993 ORTHO05D005336 5.9e-226 788.1 1171 42.7
HanXRQChr11g0332991 Helianthus annuus HOM05D003993 ORTHO05D005336 9.4e-224 780.8 1154 43.1
CSS0014856 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 1.7e-204 716.8 1222 38.1
Dinv22306 Davidia involucrata HOM05D003993 ORTHO05D005336 1.4e-203 713.8 1219 38.9
GSVIVG01014604001 Vitis vinifera HOM05D003993 ORTHO05D005336 5.0e-201 705.3 1150 39.9
Nn1g06997 Nelumbo nucifera HOM05D003993 ORTHO05D005336 6.6e-201 704.9 764 52.5
vmacro11768 Vaccinium macrocarpon HOM05D003993 ORTHO05D005336 8.9e-198 694.5 1122 39.4
Migut.H01858 Erythranthe guttata HOM05D003993 ORTHO05D005336 4.1e-195 685.6 1212 37.5
Prupe.4G202100 Prunus persica HOM05D003993 ORTHO05D005336 4.6e-194 682.2 1223 38.2
Oeu032440.1 Olea europaea HOM05D003993 ORTHO05D005336 6.0e-194 681.8 1194 38.1
MD11G1227200 Malus domestica HOM05D003993 ORTHO05D005336 1.7e-193 680.2 1217 37.6
Solyc07g064080.4 Solanum lycopersicum HOM05D003993 ORTHO05D005336 6.6e-193 678.3 1178 37.8
Actinidia09963 Actinidia chinensis HOM05D003993 ORTHO05D005336 8.6e-193 677.9 1224 38.2
MD03G1211800 Malus domestica HOM05D003993 ORTHO05D005336 3.3e-192 676.0 1216 37.4
MELO3C025431.2 Cucumis melo HOM05D003993 ORTHO05D005336 2.1e-191 673.3 1207 37.7
CSS0003157 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 3.6e-191 672.5 453 72.8
QL08p013350 Quercus lobata HOM05D003993 ORTHO05D005336 8.1e-191 671.4 1215 36.9
Sopen07g032220 Solanum pennellii HOM05D003993 ORTHO05D005336 1.1e-190 671.0 1208 36.9
Cc05_g13220 Coffea canephora HOM05D003993 ORTHO05D005336 1.8e-190 670.2 1210 38.0
Potri.011G132800 Populus trichocarpa HOM05D003993 ORTHO05D005336 3.1e-190 669.5 1218 37.7
Gohir.A01G074400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 6.8e-190 668.3 1218 37.1
CsaV3_3G005470 Cucumis sativus L. HOM05D003993 ORTHO05D005336 8.9e-190 667.9 1207 37.4
ClCG10G005790 Citrullus lanatus HOM05D003993 ORTHO05D005336 1.5e-189 667.2 1206 37.3
Gorai.002G082300 Gossypium raimondii HOM05D003993 ORTHO05D005336 2.0e-189 666.8 1215 37.0
CANSAT11G1844 Cannabis sativa HOM05D003993 ORTHO05D005336 4.4e-189 665.6 1213 38.1
Gohir.D01G060900 Gossypium hirsutum HOM05D003993 ORTHO05D005336 7.1e-187 658.3 1215 36.6
TPR.G36724 Trifolium pratense HOM05D003993 ORTHO05D005336 9.2e-187 657.9 1126 38.6
Duzib170G0292 Durio zibethinus HOM05D003993 ORTHO05D005336 4.6e-186 655.6 1269 36.2
Potri.001G417200 Populus trichocarpa HOM05D003993 ORTHO05D005336 7.8e-186 654.8 1215 37.0
TWI39G1096 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 1.3e-185 654.1 1208 36.6
Lj8C165T11 Lonicera japonica HOM05D003993 ORTHO05D005336 1.7e-185 653.7 1251 36.8
TWI38G0109 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 3.9e-185 652.5 1210 36.3
Sed0012816 Sechium edule HOM05D003993 ORTHO05D005336 6.6e-185 651.7 1208 37.0
Manes.15G076600 Manihot esculenta HOM05D003993 ORTHO05D005336 1.1e-184 651.0 1211 36.3
CiPaw.11G183500 Carya illinoinensis HOM05D003993 ORTHO05D005336 4.3e-184 649.0 1221 36.7
A01p34110 Brassica napus HOM05D003993 ORTHO05D005336 9.6e-184 647.9 1204 37.0
Eucgr.F03424 Eucalyptus grandis HOM05D003993 ORTHO05D005336 1.2e-183 647.5 1215 36.1
TAR624G0674 Trochodendron aralioides HOM05D003993 ORTHO05D005336 6.2e-183 645.2 1221 36.7
BraA01t03515Z Brassica rapa HOM05D003993 ORTHO05D005336 2.4e-182 643.3 1205 36.8
DCAR_010016 Daucus carota HOM05D003993 ORTHO05D005336 3.1e-182 642.9 1205 36.7
Sabra11G0119600 Salix brachista HOM05D003993 ORTHO05D005336 5.2e-182 642.1 1176 37.2
C01p43520 Brassica napus HOM05D003993 ORTHO05D005336 8.9e-182 641.3 1205 36.8
BolC1t04312H Brassica oleracea HOM05D003993 ORTHO05D005336 8.9e-182 641.3 1205 36.8
Cfa020417 Carpinus fangiana HOM05D003993 ORTHO05D005336 8.9e-182 641.3 1210 36.1
Atru.chr2.3206 Acer truncatum HOM05D003993 ORTHO05D005336 1.2e-181 641.0 1219 36.1
Thecc.07G054200 Theobroma cacao HOM05D003993 ORTHO05D005336 1.2e-181 641.0 1220 36.4
AT3G20720 Arabidopsis thaliana HOM05D003993 ORTHO05D005336 4.4e-181 639.0 1208 36.3
BcaB04g20636 Brassica carinata HOM05D003993 ORTHO05D005336 7.6e-181 638.3 1202 36.9
Ciclev10007272m.g Citrus clementina HOM05D003993 ORTHO05D005336 1.7e-180 637.1 1212 36.3
Aqoxy4G02086 Aquilegia oxysepala HOM05D003993 ORTHO05D005336 3.8e-180 636.0 1217 36.9
BcaC09g49013 Brassica carinata HOM05D003993 ORTHO05D005336 4.9e-180 635.6 1202 36.9
CARHR096540 Cardamine hirsuta HOM05D003993 ORTHO05D005336 6.4e-180 635.2 1208 36.1
SalBow7G3755 Salvia bowleyana HOM05D003993 ORTHO05D005336 8.4e-180 634.8 1260 34.8
Carub.0003s2068 Capsella rubella HOM05D003993 ORTHO05D005336 4.2e-179 632.5 1209 36.4
Gohir.D05G365000 Gossypium hirsutum HOM05D003993 ORTHO05D005336 1.6e-178 630.6 1218 35.2
Gorai.009G427300 Gossypium raimondii HOM05D003993 ORTHO05D005336 2.1e-178 630.2 1218 35.4
Lalb_Chr19g0134741 Lupinus albus HOM05D003993 ORTHO05D005336 2.7e-178 629.8 1221 36.0
AL3G34640 Arabidopsis lyrata HOM05D003993 ORTHO05D005336 1.0e-177 627.9 1209 36.4
Lj3g0021702 Lotus japonicus HOM05D003993 ORTHO05D005336 1.0e-177 627.9 1216 35.7
Sp3g18740 Schrenkiella parvula HOM05D003993 ORTHO05D005336 1.0e-177 627.9 1208 36.2
PSO675G0751 Papaver somniferum HOM05D003993 ORTHO05D005336 1.3e-177 627.5 1221 36.8
PSO541G2178 Papaver somniferum HOM05D003993 ORTHO05D005336 1.5e-176 624.0 1221 36.5
EL10Ac4g07982 Beta vulgaris HOM05D003993 ORTHO05D005336 1.3e-175 620.9 1218 34.6
Ca_01754_v3 Cicer arietinum L. HOM05D003993 ORTHO05D005336 1.3e-175 620.9 1217 35.5
Medtr2g082910 Medicago truncatula HOM05D003993 ORTHO05D005336 1.3e-175 620.9 1210 36.3
FvH4_3g21780 Fragaria vesca HOM05D003993 ORTHO05D005336 2.8e-175 619.8 1211 35.9
Psat5g251760 Pisum sativum HOM05D003993 ORTHO05D005336 6.2e-175 618.6 1209 35.8
Phvul.005G091400 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 8.1e-175 618.2 1218 35.7
arahy.Tifrunner.gnm1.ann1.YETR49 Arachis hypogaea HOM05D003993 ORTHO05D005336 1.1e-174 617.8 1223 35.7
THA.LOC104817894 Tarenaya hassleriana HOM05D003993 ORTHO05D005336 1.4e-174 617.5 1207 35.2
VMungo1080G1710 Vigna mungo HOM05D003993 ORTHO05D005336 1.4e-174 617.5 498 64.1
Nn1g03663 Nelumbo nucifera HOM05D003993 ORTHO05D005336 2.4e-174 616.7 498 64.7
Glyma.12G214500 Glycine max HOM05D003993 ORTHO05D005336 6.9e-174 615.1 1222 35.5
Nitab4.5_0000397g0110 Nicotiana tabacum HOM05D003993 ORTHO05D005336 1.5e-173 614.0 1289 34.5
AUR62015640 Chenopodium quinoa HOM05D003993 ORTHO05D005336 1.3e-172 610.9 1238 34.2
RcHm_v2.0_Chr5g0037331 Rosa chinensis HOM05D003993 ORTHO05D005336 2.2e-172 610.1 1220 35.4
arahy.Tifrunner.gnm1.ann1.C7DQ5B Arachis hypogaea HOM05D003993 ORTHO05D005336 9.3e-171 604.7 1215 35.4
arahy.Tifrunner.gnm1.ann1.M0TH05 Arachis hypogaea HOM05D003993 ORTHO05D005336 9.3e-171 604.7 1219 34.9
FAN25G1663 Fragaria x ananassa HOM05D003993 ORTHO05D005336 1.6e-170 604.0 1217 35.3
Glyma.13G287100 Glycine max HOM05D003993 ORTHO05D005336 1.6e-170 604.0 1223 35.0
Psat7g122440 Pisum sativum HOM05D003993 ORTHO05D005336 2.1e-170 603.6 503 62.8
Glyma.12G135700 Glycine max HOM05D003993 ORTHO05D005336 2.7e-170 603.2 1218 35.0
FAN16G1112 Fragaria x ananassa HOM05D003993 ORTHO05D005336 3.5e-170 602.8 1233 35.0
FAN11G2565 Fragaria x ananassa HOM05D003993 ORTHO05D005336 1.8e-169 600.5 1224 35.0
Lj3g0011163 Lotus japonicus HOM05D003993 ORTHO05D005336 3.9e-169 599.4 1210 35.1
PGR031G1242 Punica granatum HOM05D003993 ORTHO05D005336 3.3e-168 596.3 1206 35.3
CAN.G337.149 Capsicum annuum HOM05D003993 ORTHO05D005336 1.3e-167 594.3 1177 35.3
Lalb_Chr14g0366101 Lupinus albus HOM05D003993 ORTHO05D005336 1.6e-167 594.0 499 60.9
TAR626G1606 Trochodendron aralioides HOM05D003993 ORTHO05D005336 4.8e-167 592.4 1217 35.2
Nitab4.5_0009192g0040 Nicotiana tabacum HOM05D003993 ORTHO05D005336 1.8e-166 590.5 1207 34.8
Peaxi162Scf01086g00149 Petunia axillaris HOM05D003993 ORTHO05D005336 1.2e-165 587.8 1208 34.8
HPP92_011131 Vanilla planifolia HOM05D003993 ORTHO05D005336 2.0e-165 587.0 1212 34.2
Haze_09608 Corylus avellana HOM05D003993 ORTHO05D005336 9.9e-165 584.7 1219 34.2
Os04g0628600 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 1.7e-164 583.9 453 65.1
ATR0073G006 Amborella trichopoda HOM05D003993 ORTHO05D005336 1.1e-163 581.3 454 64.5
SEGI_25073 Sequoiadendron giganteum HOM05D003993 ORTHO05D005336 2.4e-163 580.1 500 59.6
Ah.06g183050 Amaranthus hybridus HOM05D003993 ORTHO05D005336 2.3e-161 573.5 1193 34.5
FAN21G3569 Fragaria x ananassa HOM05D003993 ORTHO05D005336 6.9e-158 562.0 498 59.6
COL.COLO4_09564 Corchorus olitorius HOM05D003993 ORTHO05D005336 7.6e-157 558.5 1219 33.9
Cpa.g.sc97.71 Carica papaya HOM05D003993 ORTHO05D005336 1.1e-155 554.7 1217 33.2
Thhalv10019934m.g Eutrema salsugineum HOM05D003993 ORTHO05D005336 4.2e-155 552.7 1164 34.4
Aa31LG8G7470 Aethionema arabicum HOM05D003993 ORTHO05D005336 7.1e-155 552.0 1286 33.3
Gohir.A04G022400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 7.2e-147 525.4 1152 32.6
SGA_v2.0_scaffold320G48573 Striga asiatica HOM05D003993 ORTHO05D005336 7.2e-147 525.4 1278 31.9
Medtr4g081300 Medicago truncatula HOM05D003993 ORTHO05D005336 3.2e-139 500.0 1129 32.9
SMO143G0035 Selaginella moellendorffii HOM05D003993 ORTHO05D005336 2.0e-136 490.7 495 53.9
Mapoly0007s0002 Marchantia polymorpha HOM05D003993 ORTHO05D005336 6.3e-135 485.7 455 54.7
MBI18_g30688_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 8.2e-135 485.3 1122 32.0
Pp3c10_1850 Physcomitrium patens HOM05D003993 ORTHO05D005336 5.9e-133 479.2 455 53.8
arahy.Tifrunner.gnm1.ann1.D8T6NU Arachis hypogaea HOM05D003993 ORTHO05D005336 7.7e-133 478.8 397 61.2
Sc16g0006470 Simmondsia chinensis HOM05D003993 ORTHO05D005336 1.1e-131 474.9 1111 31.6
Phvul.011G140701 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 1.2e-130 471.5 428 56.3
AagrBONN_evm.TU.Sc2ySwM_344.1679 Anthoceros agrestis HOM05D003993 ORTHO05D005336 6.7e-121 439.1 432 53.0
Duzib213G0987 Durio zibethinus HOM05D003993 ORTHO05D005336 5.5e-107 392.9 1065 31.8
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 1.3e-100 371.7 1024 30.4
A05p28100 Brassica napus HOM05D003993 ORTHO05D005336 1.7e-100 371.3 342 58.5
BraA05t21692Z Brassica rapa HOM05D003993 ORTHO05D005336 2.9e-100 370.5 353 57.2
Pp3c15_5100 Physcomitrium patens HOM05D003993 ORTHO05D005336 3.6e-98 363.6 454 43.6
arahy.Tifrunner.gnm1.ann1.P0I1SB Arachis hypogaea HOM05D003993 ORTHO05D005336 6.4e-95 352.8 310 57.7
CBR_g39891 Chara braunii HOM05D003993 ORTHO05D005336 1.1e-89 335.5 460 41.1
unitig_26.g9969 Utricularia gibba HOM05D003993 ORTHO05D005336 9.9e-80 302.4 1040 28.5
QL04p049176 Quercus lobata HOM05D003993 ORTHO05D005336 2.2e-79 301.2 201 71.6
QL05p071299 Quercus lobata HOM05D003993 ORTHO05D005336 3.1e-73 280.8 182 72.5
VMungo1127G0362 Vigna mungo HOM05D003993 ORTHO05D005336 2.0e-72 278.1 273 53.1
BcaC05g28293 Brassica carinata HOM05D003993 ORTHO05D005336 3.3e-67 260.8 312 50.6
HanXRQChr17g0562031 Helianthus annuus HOM05D003993 ORTHO05D005336 9.6e-67 259.2 152 90.8
PGSC0003DMG401019261 Solanum tuberosum HOM05D003993 ORTHO05D005336 2.8e-66 257.7 300 51.3
arahy.Tifrunner.gnm1.ann1.9VYU83 Arachis hypogaea HOM05D003993 ORTHO05D005336 1.4e-65 255.4 418 44.0
QL11p046973 Quercus lobata HOM05D003993 ORTHO05D005336 8.1e-50 203.0 132 72.0
C05p43510 Brassica napus HOM05D003993 ORTHO05D005336 4.5e-48 197.2 289 44.6
BolC5t33074H Brassica oleracea HOM05D003993 ORTHO05D005336 6.4e-47 193.4 320 41.2
Hund02131 Selenicereus undatus HOM05D003993 ORTHO05D005336 6.0e-45 186.8 308 39.3
SHI31872 Sapria himalayana HOM05D003993 ORTHO05D005336 3.9e-44 184.1 176 55.7
FAN21G2881 Fragaria x ananassa HOM05D003993 ORTHO05D005336 5.1e-44 183.7 329 39.5
AUR62020558 Chenopodium quinoa HOM05D003993 ORTHO05D005336 6.7e-44 183.3 310 35.2
VMungo1127G1901 Vigna mungo HOM05D003993 ORTHO05D005336 1.2e-40 172.6 313 35.5
Hund02134 Selenicereus undatus HOM05D003993 ORTHO05D005336 1.5e-40 172.2 246 42.3
CDE05G2526 Ceratophyllum demersum HOM05D003993 ORTHO05D005336 7.4e-35 153.3 97 82.5
SHI50190 Sapria himalayana HOM05D003993 ORTHO05D005336 9.7e-35 152.9 132 62.1
Zm00001eb431410 Zea mays HOM05D003993 ORTHO05D005336 6.3e-34 150.2 321 32.1
Lsat_1_v5_gn_4_127040 Lactuca sativa HOM05D003993 ORTHO05D002051 9.0e-33 146.4 152 50.0
SHI31871 Sapria himalayana HOM05D003993 ORTHO05D005336 3.2e-30 137.9 328 32.9
MBI18_g40553_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 8.5e-23 113.2 72 76.4
arahy.Tifrunner.gnm1.ann1.H4PP15 Arachis hypogaea HOM05D003993 ORTHO05D005336 3.2e-22 111.3 190 38.4
VMungo1127G0084 Vigna mungo HOM05D003993 ORTHO05D005336 1.2e-21 109.4 68 76.5
Gorai.006G047200 Gossypium raimondii HOM05D003993 ORTHO05D005336 1.5e-19 102.4 158 40.5
arahy.Tifrunner.gnm1.ann1.R5QT9H Arachis hypogaea HOM05D003993 ORTHO05D005336 7.7e-16 90.1 80 61.2
Os06g0731950 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 1.4e-14 85.9 69 56.5
Zm00001eb157050 Zea mays HOM05D003993 ORTHO05D011419 1.2e-13 82.8 139 38.8
arahy.Tifrunner.gnm1.ann1.UE9C9H Arachis hypogaea HOM05D003993 ORTHO05D005336 1.4e-12 79.3 111 43.2
Lsat_1_v5_gn_4_137320 Lactuca sativa HOM05D000154 ORTHO05D000092 2.3e-12 78.6 53 69.8
arahy.Tifrunner.gnm1.ann1.43HIPW Arachis hypogaea HOM05D003993 ORTHO05D005336 9.7e-11 73.2 50 66.0
BolC5t33071H Brassica oleracea HOM05D000001 ORTHO05D000003 1.1e-09 69.7 154 31.8
Zm00001eb128700 Zea mays HOM05D003993 ORTHO05D014907 5.3e-09 67.4 100 37.0
Gohir.D01G097266 Gossypium hirsutum HOM05D003993 ORTHO05D014907 1.6e-08 65.9 71 45.1
Gorai.001G142700 Gossypium raimondii HOM05D003993 ORTHO05D014907 1.6e-08 65.9 71 45.1
Gorai.002G111900 Gossypium raimondii HOM05D003993 ORTHO05D014907 2.6e-08 65.1 93 38.7
BcaC05g28290 Brassica carinata HOM05D003993 ORTHO05D005336 3.5e-08 64.7 144 31.9
Gohir.A05G172101 Gossypium hirsutum HOM05D003993 ORTHO05D014907 3.5e-08 64.7 71 45.1
Gohir.A05G278766 Gossypium hirsutum HOM05D003993 ORTHO05D014907 3.5e-08 64.7 71 45.1
Gohir.A10G041333 Gossypium hirsutum HOM05D003993 ORTHO05D014907 3.5e-08 64.7 71 45.1
TPR.G25926 Trifolium pratense HOM05D001139 ORTHO05D000936 1.9e-06 58.9 52 55.8
C05p43480 Brassica napus HOM05D000001 ORTHO05D000003 2.5e-06 58.5 54 48.1
arahy.Tifrunner.gnm1.ann1.5R4HUS Arachis hypogaea HOM05D003993 ORTHO05D014907 3.2e-06 58.2 81 37.0
CBR_g34596 Chara braunii HOM05D000907 ORTHO05D021274 3.2e-06 58.2 56 51.8
arahy.Tifrunner.gnm1.ann1.GX0MR1 Arachis hypogaea HOM05D003993 ORTHO05D014907 5.5e-06 57.4 53 49.1
arahy.Tifrunner.gnm1.ann1.SWME7Z Arachis hypogaea HOM05D003993 ORTHO05D014907 7.2e-06 57.0 57 45.6


User provided reference genes

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