Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0232181 Helianthus annuus HOM05D001083 ORTHO05D001637 1.7e-70 269.2 138 100.0
HanXRQChr10g0306671 Helianthus annuus HOM05D001083 ORTHO05D001637 1.4e-43 179.9 95 96.8
ECA234G4394 Erigeron canadensis HOM05D001083 ORTHO05D001637 3.4e-42 175.3 95 92.6
Lsat_1_v5_gn_5_121420 Lactuca sativa HOM05D001083 ORTHO05D001637 7.0e-32 141.0 99 80.8
Actinidia12340 Actinidia chinensis HOM05D001083 ORTHO05D001637 1.8e-27 126.3 95 63.2
Actinidia20613 Actinidia chinensis HOM05D001083 ORTHO05D001637 2.3e-27 125.9 95 62.1
vmacro12034 Vaccinium macrocarpon HOM05D001083 ORTHO05D001637 8.9e-27 124.0 95 64.2
TWI36G0348 Tripterygium wilfordii HOM05D001083 ORTHO05D001637 2.0e-26 122.9 95 65.3
Lj8A139G63 Lonicera japonica HOM05D001083 ORTHO05D001637 2.6e-26 122.5 95 65.3
TWI36G0616 Tripterygium wilfordii HOM05D001083 ORTHO05D001637 2.6e-26 122.5 95 65.3
Cfa014188 Carpinus fangiana HOM05D001083 ORTHO05D001637 2.9e-25 119.0 95 60.0
Sabra14G0131500 Salix brachista HOM05D001083 ORTHO05D001637 2.9e-25 119.0 95 62.1
Haze_12565 Corylus avellana HOM05D001083 ORTHO05D001637 3.7e-25 118.6 95 60.0
CSS0020165 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D001637 6.3e-25 117.9 95 62.1
CSS0030266 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D001637 6.3e-25 117.9 95 62.1
GSVIVG01030144001 Vitis vinifera HOM05D001083 ORTHO05D001637 6.3e-25 117.9 98 61.2
Manes.12G058400 Manihot esculenta HOM05D001083 ORTHO05D001637 1.1e-24 117.1 95 61.1
Potri.014G172000 Populus trichocarpa HOM05D001083 ORTHO05D001637 1.4e-24 116.7 95 60.0
Glyma.02G309200 Glycine max HOM05D001083 ORTHO05D001637 2.4e-24 115.9 95 60.0
Phvul.008G289400 Phaseolus vulgaris HOM05D001083 ORTHO05D001637 2.4e-24 115.9 95 60.0
Glyma.14G003600 Glycine max HOM05D001083 ORTHO05D001637 5.4e-24 114.8 95 58.9
COL.COLO4_19707 Corchorus olitorius HOM05D001083 ORTHO05D001637 7.0e-24 114.4 95 60.0
QL04p065705 Quercus lobata HOM05D001083 ORTHO05D001637 7.0e-24 114.4 95 57.9
Rhsim06G0182800 Rhododendron simsii HOM05D001083 ORTHO05D001637 7.0e-24 114.4 96 61.5
Thecc.01G202300 Theobroma cacao HOM05D001083 ORTHO05D001637 1.6e-23 113.2 95 61.1
Duzib138G0365 Durio zibethinus HOM05D001083 ORTHO05D001637 3.5e-23 112.1 95 60.0
MBI15_g28685_MAGBIO Magnolia biondii HOM05D001083 ORTHO05D001637 4.6e-23 111.7 95 56.8
CiPaw.03G284800 Carya illinoinensis HOM05D001083 ORTHO05D001637 1.0e-22 110.5 98 53.1
Aqoxy4G02282 Aquilegia oxysepala HOM05D001083 ORTHO05D001637 1.3e-22 110.2 95 56.8
Eucgr.K01368 Eucalyptus grandis HOM05D001083 ORTHO05D001637 1.3e-22 110.2 95 57.9
Gohir.A07G194400 Gossypium hirsutum HOM05D001083 ORTHO05D001637 1.3e-22 110.2 95 57.9
TAR629G2855 Trochodendron aralioides HOM05D001083 ORTHO05D001637 1.3e-22 110.2 95 57.9
arahy.Tifrunner.gnm1.ann1.A0ACWS Arachis hypogaea HOM05D001083 ORTHO05D001637 1.7e-22 109.8 97 59.8
arahy.Tifrunner.gnm1.ann1.17KMWE Arachis hypogaea HOM05D001083 ORTHO05D001637 2.3e-22 109.4 97 59.8
Medtr5g098710 Medicago truncatula HOM05D001083 ORTHO05D001637 2.9e-22 109.0 95 57.9
TPR.G35889 Trifolium pratense HOM05D001083 ORTHO05D001637 2.9e-22 109.0 95 57.9
Gohir.D07G200700 Gossypium hirsutum HOM05D001083 ORTHO05D001637 3.9e-22 108.6 95 56.8
Gorai.001G225300 Gossypium raimondii HOM05D001083 ORTHO05D001637 3.9e-22 108.6 95 56.8
Hma1.2p1_1373F.1_g278700 Hydrangea macrophylla HOM05D001083 ORTHO05D001637 3.9e-22 108.6 95 58.9
Hma1.2p1_2663F.1_g326410 Hydrangea macrophylla HOM05D001083 ORTHO05D001637 3.9e-22 108.6 95 58.9
VMungo0647G2095 Vigna mungo HOM05D001083 ORTHO05D001637 3.9e-22 108.6 95 56.8
Ca_06486_v3 Cicer arietinum L. HOM05D001083 ORTHO05D001637 6.6e-22 107.8 95 57.9
Ciclev10014121m.g Citrus clementina HOM05D001083 ORTHO05D001637 8.6e-22 107.5 96 54.2
MD09G1134500 Malus domestica HOM05D001083 ORTHO05D001637 8.6e-22 107.5 93 58.1
Psat2g002000 Pisum sativum HOM05D001083 ORTHO05D001637 1.1e-21 107.1 95 57.9
FvH4_6g40180 Fragaria vesca HOM05D001083 ORTHO05D001637 1.5e-21 106.7 95 53.7
FAN02G2977 Fragaria x ananassa HOM05D001083 ORTHO05D001637 1.5e-21 106.7 95 53.7
FAN14G2444 Fragaria x ananassa HOM05D001083 ORTHO05D001637 1.5e-21 106.7 95 53.7
DCAR_019651 Daucus carota HOM05D001083 ORTHO05D001637 3.3e-21 105.5 98 56.1
Nn1g07658 Nelumbo nucifera HOM05D001083 ORTHO05D001637 3.3e-21 105.5 95 58.9
Cc05_g09900 Coffea canephora HOM05D001083 ORTHO05D001637 9.5e-21 104.0 95 56.8
Rhsim06G0181800 Rhododendron simsii HOM05D001083 ORTHO05D001637 1.2e-20 103.6 107 54.2
Oeu030576.1 Olea europaea HOM05D001083 ORTHO05D001637 1.6e-20 103.2 95 55.8
PSO541G3473 Papaver somniferum HOM05D001083 ORTHO05D001637 1.6e-20 103.2 98 51.0
PGR044G2732 Punica granatum HOM05D001083 ORTHO05D001637 2.8e-20 102.4 89 53.9
Sc15g0007380 Simmondsia chinensis HOM05D001083 ORTHO05D001637 3.6e-20 102.1 99 55.6
Migut.M00628 Erythranthe guttata HOM05D001083 ORTHO05D001637 6.1e-20 101.3 95 56.8
PSO675G8881 Papaver somniferum HOM05D001083 ORTHO05D001637 6.1e-20 101.3 98 50.0
MSTRG.15023 Avicennia marina HOM05D001083 ORTHO05D001637 8.0e-20 100.9 99 54.5
LjContig00081g0020061 Lotus japonicus HOM05D001083 ORTHO05D001637 1.0e-19 100.5 96 55.2
RcHm_v2.0_Chr2g0155201 Rosa chinensis HOM05D001083 ORTHO05D001637 1.0e-19 100.5 95 50.5
Dinv21335 Davidia involucrata HOM05D001083 ORTHO05D001637 1.4e-19 100.1 95 54.7
FAN05G4687 Fragaria x ananassa HOM05D001083 ORTHO05D001637 1.4e-19 100.1 97 51.5
ClCG02G010600 Citrullus lanatus HOM05D001083 ORTHO05D001637 1.8e-19 99.8 96 53.1
Nitab4.5_0001612g0120 Nicotiana tabacum HOM05D001083 ORTHO05D001637 2.3e-19 99.4 95 56.8
SalBow8G2763 Salvia bowleyana HOM05D001083 ORTHO05D001637 3.1e-19 99.0 95 54.7
FAN09G2056 Fragaria x ananassa HOM05D001083 ORTHO05D001637 5.2e-19 98.2 97 50.5
MD17G1123400 Malus domestica HOM05D001083 ORTHO05D001637 5.2e-19 98.2 95 54.7
MELO3C013466.2 Cucumis melo HOM05D001083 ORTHO05D001637 6.8e-19 97.8 96 52.1
CsaV3_6G009810 Cucumis sativus L. HOM05D001083 ORTHO05D001637 6.8e-19 97.8 96 52.1
Lalb_Chr17g0349321 Lupinus albus HOM05D001083 ORTHO05D001637 8.9e-19 97.4 95 51.6
Cpa.g.sc4189.1 Carica papaya HOM05D001083 ORTHO05D018699 2.0e-18 96.3 93 51.6
Solyc07g056060.4 Solanum lycopersicum HOM05D001083 ORTHO05D001637 4.4e-18 95.1 98 53.1
Sopen07g029420 Solanum pennellii HOM05D001083 ORTHO05D001637 5.8e-18 94.7 98 53.1
Nitab4.5_0004166g0040 Nicotiana tabacum HOM05D001083 ORTHO05D001637 9.8e-18 94.0 96 55.2
Peaxi162Scf00111g00540 Petunia axillaris HOM05D001083 ORTHO05D001637 1.7e-17 93.2 95 54.7
Prupe.3G192200 Prunus persica HOM05D001083 ORTHO05D001637 1.7e-17 93.2 95 51.6
AUR62037156 Chenopodium quinoa HOM05D001083 ORTHO05D001637 2.2e-17 92.8 95 49.5
AUR62025101 Chenopodium quinoa HOM05D001083 ORTHO05D001637 4.9e-17 91.7 95 49.5
Sed0014702 Sechium edule HOM05D001083 ORTHO05D001637 4.9e-17 91.7 96 49.0
PGSC0003DMG400031098 Solanum tuberosum HOM05D001083 ORTHO05D001637 4.9e-17 91.7 98 52.0
CAN.G585.7 Capsicum annuum HOM05D001083 ORTHO05D001637 8.3e-17 90.9 96 53.1
CANSAT64G2565 Cannabis sativa HOM05D001083 ORTHO05D001637 7.0e-16 87.8 95 49.5
Ah.01g003430 Amaranthus hybridus HOM05D001083 ORTHO05D001637 1.6e-15 86.7 95 46.3
Hund08118 Selenicereus undatus HOM05D001083 ORTHO05D001637 2.0e-15 86.3 95 48.4
THA.LOC104822527 Tarenaya hassleriana HOM05D001083 ORTHO05D001637 3.0e-14 82.4 98 45.9
Atru.chr6.3454 Acer truncatum HOM05D001083 ORTHO05D001637 6.6e-14 81.3 62 64.5
Sp2g18680 Schrenkiella parvula HOM05D001083 ORTHO05D001637 1.5e-13 80.1 101 43.6
A06p39250 Brassica napus HOM05D001083 ORTHO05D001637 1.9e-13 79.7 101 43.6
ATR0751G218 Amborella trichopoda HOM05D001083 ORTHO05D001637 2.5e-13 79.3 89 50.6
BraA06t26839Z Brassica rapa HOM05D001083 ORTHO05D001637 2.5e-13 79.3 101 43.6
BcaC06g30810 Brassica carinata HOM05D001083 ORTHO05D001637 4.3e-13 78.6 101 42.6
C07p39090 Brassica napus HOM05D001083 ORTHO05D001637 4.3e-13 78.6 101 42.6
BolC7t44427H Brassica oleracea HOM05D001083 ORTHO05D001637 4.3e-13 78.6 101 42.6
Aa31sc687G20 Aethionema arabicum HOM05D001083 ORTHO05D001637 7.3e-13 77.8 101 41.6
Thhalv10003546m.g Eutrema salsugineum HOM05D001083 ORTHO05D001637 7.3e-13 77.8 101 40.6
CARHR183980 Cardamine hirsuta HOM05D001083 ORTHO05D001637 1.2e-12 77.0 103 41.7
Sed0020587 Sechium edule HOM05D001083 ORTHO05D001637 3.6e-12 75.5 96 43.8
AT5G48310 Arabidopsis thaliana HOM05D001083 ORTHO05D001637 1.8e-11 73.2 106 46.2
Carub.0008s0786 Capsella rubella HOM05D001083 ORTHO05D001637 3.1e-11 72.4 104 41.3
SGA_v2.0_scaffold70G23598 Striga asiatica HOM05D001083 ORTHO05D001637 5.2e-11 71.6 96 44.8
AL8G21040 Arabidopsis lyrata HOM05D001083 ORTHO05D001637 8.9e-11 70.9 103 40.8
HPP92_003828 Vanilla planifolia HOM05D001083 ORTHO05D001637 2.6e-10 69.3 97 43.3
Os02g0198400 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D001637 1.1e-08 63.9 99 36.4
Zm00001eb235970 Zea mays HOM05D001083 ORTHO05D001637 1.9e-08 63.2 99 35.4


User provided reference genes

Program Settings