Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 2.0e-65 252.3 127 100.0
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 7.9e-30 134.0 137 57.7
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 4.5e-25 118.2 87 73.6
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 1.0e-24 117.1 84 75.0
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 1.0e-24 117.1 70 82.9
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 1.3e-24 116.7 78 76.9
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 1.3e-24 116.7 70 82.9
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 1.7e-24 116.3 74 79.7
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 2.2e-24 115.9 70 82.9
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.2e-24 115.9 70 81.4
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 2.2e-24 115.9 84 73.8
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.9e-24 115.5 70 81.4
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 2.9e-24 115.5 83 74.7
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 3.8e-24 115.2 83 73.5
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 4.9e-24 114.8 98 65.3
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 8.4e-24 114.0 82 72.0
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 8.4e-24 114.0 79 75.9
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 8.4e-24 114.0 70 78.6
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.9e-23 112.8 94 64.9
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 1.9e-23 112.8 95 65.3
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 1.9e-23 112.8 79 73.4
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.9e-23 112.8 97 63.9
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 2.5e-23 112.5 79 74.7
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.5e-23 112.5 79 72.2
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 2.5e-23 112.5 97 63.9
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 3.2e-23 112.1 91 65.9
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 3.2e-23 112.1 88 69.3
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 3.2e-23 112.1 79 72.2
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 3.2e-23 112.1 91 65.9
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 3.2e-23 112.1 79 74.7
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 3.2e-23 112.1 88 69.3
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 3.2e-23 112.1 74 75.7
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.2e-23 111.7 69 79.7
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 4.2e-23 111.7 79 73.4
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 5.5e-23 111.3 94 63.8
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 5.5e-23 111.3 98 63.3
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 9.3e-23 110.5 94 63.8
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 9.3e-23 110.5 69 78.3
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 9.3e-23 110.5 70 75.7
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 1.2e-22 110.2 88 67.0
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.2e-22 110.2 79 70.9
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 1.2e-22 110.2 79 70.9
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 1.6e-22 109.8 79 73.4
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 1.6e-22 109.8 79 74.7
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.6e-22 109.8 79 73.4
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.6e-22 109.8 67 80.6
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 2.1e-22 109.4 93 63.4
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.1e-22 109.4 79 70.9
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 2.1e-22 109.4 79 70.9
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 2.1e-22 109.4 94 64.9
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 2.1e-22 109.4 79 72.2
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 2.1e-22 109.4 79 72.2
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 3.5e-22 108.6 68 79.4
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 3.5e-22 108.6 90 64.4
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 3.5e-22 108.6 90 64.4
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 3.5e-22 108.6 90 64.4
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 3.5e-22 108.6 90 64.4
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 3.5e-22 108.6 71 77.5
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 3.5e-22 108.6 70 74.3
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 3.5e-22 108.6 90 64.4
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 4.6e-22 108.2 90 64.4
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 4.6e-22 108.2 70 77.1
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 4.6e-22 108.2 98 64.3
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 6.0e-22 107.8 70 75.7
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 6.0e-22 107.8 69 76.8
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 6.0e-22 107.8 79 70.9
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 6.0e-22 107.8 69 76.8
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 6.0e-22 107.8 93 62.4
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 6.0e-22 107.8 78 71.8
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 6.0e-22 107.8 78 71.8
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 6.0e-22 107.8 69 78.3
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 7.9e-22 107.5 90 63.3
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 7.9e-22 107.5 69 78.3
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 1.0e-21 107.1 71 73.2
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.0e-21 107.1 83 69.9
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 1.0e-21 107.1 71 74.6
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 1.0e-21 107.1 79 70.9
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 1.0e-21 107.1 69 78.3
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 1.3e-21 106.7 78 71.8
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 1.3e-21 106.7 90 63.3
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.3e-21 106.7 69 75.4
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.3e-21 106.7 78 71.8
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 1.3e-21 106.7 93 63.4
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 1.8e-21 106.3 96 61.5
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 1.8e-21 106.3 98 61.2
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 1.8e-21 106.3 79 68.4
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.8e-21 106.3 82 69.5
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 2.3e-21 105.9 69 75.4
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 2.3e-21 105.9 70 72.9
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 2.3e-21 105.9 82 69.5
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 3.0e-21 105.5 68 75.0
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.0e-21 105.5 82 67.1
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 3.9e-21 105.1 79 67.1
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 5.1e-21 104.8 90 63.3
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 6.7e-21 104.4 69 73.9
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 8.7e-21 104.0 78 67.9
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 1.1e-20 103.6 69 72.5
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 1.1e-20 103.6 79 69.6
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.1e-20 103.6 79 68.4
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 1.5e-20 103.2 79 68.4
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 1.9e-20 102.8 80 67.5
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.9e-20 102.8 80 67.5
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 1.9e-20 102.8 98 60.2
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 3.3e-20 102.1 79 67.1
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.2e-19 99.4 68 73.5
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 3.7e-19 98.6 98 58.2
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 1.4e-18 96.7 88 59.1
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 3.1e-18 95.5 69 69.6
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 5.3e-18 94.7 98 55.1
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 5.9e-17 91.3 93 61.3
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 1.0e-16 90.5 74 63.5
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.0e-16 90.5 96 54.2
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 1.3e-16 90.1 69 66.7
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.7e-16 89.7 74 58.1
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.7e-16 89.7 69 63.8
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 2.9e-16 89.0 55 78.2
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.0e-16 88.2 70 67.1
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 8.5e-16 87.4 69 62.3
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 1.4e-15 86.7 70 65.7
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 1.4e-15 86.7 74 63.5
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 3.2e-15 85.5 57 73.7
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 5.5e-15 84.7 69 60.9
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 2.7e-14 82.4 70 60.0
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 3.6e-14 82.0 71 59.2
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 6.1e-14 81.3 70 65.7
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 1.4e-13 80.1 69 56.5
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.3e-13 79.3 78 56.4
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 3.9e-13 78.6 81 53.1
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 1.1e-12 77.0 69 58.0
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 1.3e-11 73.6 67 58.2
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.1e-10 70.5 79 55.7
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.4e-10 70.1 49 73.5
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 9.1e-10 67.4 84 51.2
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 3.4e-09 65.5 46 67.4
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 3.4e-09 65.5 36 77.8
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 5.5e-07 58.2 36 63.9
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 2.7e-06 55.8 79 48.1


User provided reference genes

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