Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 2.4e-156 555.4 278 100.0
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 2.8e-96 355.9 194 91.8
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 3.8e-85 318.9 278 65.5
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 7.4e-73 278.1 221 65.6
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 3.7e-72 275.8 186 72.6
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 5.9e-70 268.5 186 71.5
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 2.2e-69 266.5 210 65.2
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 3.2e-68 262.7 233 61.8
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 9.4e-68 261.2 186 68.8
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 3.6e-67 259.2 223 61.0
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 1.0e-66 257.7 186 68.8
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.4e-66 257.3 184 68.5
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.4e-66 257.3 184 68.5
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.3e-66 256.5 200 65.5
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 3.0e-66 256.1 186 66.7
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.0e-66 256.1 186 67.7
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 3.9e-66 255.8 180 69.4
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 3.9e-66 255.8 202 63.9
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.9e-66 255.8 183 67.8
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.1e-66 255.4 202 63.9
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 1.1e-65 254.2 220 60.0
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.1e-65 254.2 202 63.4
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 1.5e-65 253.8 223 60.1
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 2.0e-65 253.4 219 59.4
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 2.0e-65 253.4 186 66.7
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 3.3e-65 252.7 187 65.8
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 4.3e-65 252.3 213 61.5
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 5.7e-65 251.9 204 61.8
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 5.7e-65 251.9 199 61.3
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 7.4e-65 251.5 221 60.2
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 9.7e-65 251.1 186 67.7
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 9.7e-65 251.1 190 65.3
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 1.3e-64 250.8 184 67.9
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.3e-64 250.8 186 67.2
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 1.7e-64 250.4 182 67.6
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 1.7e-64 250.4 204 59.8
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 2.2e-64 250.0 182 67.6
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 2.8e-64 249.6 229 56.8
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 2.8e-64 249.6 229 56.8
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 3.7e-64 249.2 186 63.4
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 3.7e-64 249.2 182 67.6
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 3.7e-64 249.2 186 65.6
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 3.7e-64 249.2 186 65.1
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 4.8e-64 248.8 186 64.0
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 4.8e-64 248.8 180 68.3
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.8e-64 248.8 186 65.1
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 8.2e-64 248.1 241 53.9
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 8.2e-64 248.1 186 63.4
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.1e-63 247.7 186 64.0
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 1.4e-63 247.3 188 66.5
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 1.4e-63 247.3 188 66.5
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 1.4e-63 247.3 187 67.9
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.8e-63 246.9 241 53.5
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.8e-63 246.9 182 66.5
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.8e-63 246.9 182 66.5
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 1.8e-63 246.9 187 65.8
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 1.8e-63 246.9 200 62.5
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 1.8e-63 246.9 186 63.4
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 2.4e-63 246.5 186 66.1
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.4e-63 246.5 186 63.4
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 3.1e-63 246.1 213 58.7
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 3.1e-63 246.1 184 66.8
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 3.1e-63 246.1 217 59.4
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 3.1e-63 246.1 183 65.6
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.3e-63 245.4 186 65.1
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 1.5e-62 243.8 216 57.9
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.5e-62 243.8 186 63.4
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 1.5e-62 243.8 182 66.5
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 2.6e-62 243.0 212 58.5
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 2.6e-62 243.0 218 59.6
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 2.6e-62 243.0 188 66.5
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 3.4e-62 242.7 186 65.6
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 5.9e-62 241.9 233 56.2
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 7.7e-62 241.5 190 61.1
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 7.7e-62 241.5 198 62.6
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 1.7e-61 240.4 194 59.8
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 2.2e-61 240.0 186 64.0
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 2.2e-61 240.0 187 64.7
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 2.2e-61 240.0 186 64.0
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 2.9e-61 239.6 223 57.4
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 3.8e-61 239.2 184 64.7
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 5.0e-61 238.8 180 64.4
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 6.5e-61 238.4 186 63.4
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 6.5e-61 238.4 188 65.4
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.1e-60 237.7 182 64.8
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 1.1e-60 237.7 182 65.4
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 1.1e-60 237.7 186 62.9
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 1.4e-60 237.3 182 65.4
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.9e-60 236.9 187 65.2
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.9e-60 236.9 204 60.8
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 9.4e-60 234.6 186 61.3
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 4.7e-59 232.3 180 62.8
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 6.1e-59 231.9 184 61.4
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 6.1e-59 231.9 173 65.3
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 1.0e-58 231.1 206 56.3
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.0e-57 226.9 204 57.4
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 4.4e-57 225.7 168 67.9
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 5.7e-57 225.3 180 62.2
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 7.4e-57 224.9 213 54.0
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 2.8e-56 223.0 186 58.1
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 6.3e-56 221.9 190 58.4
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 1.8e-55 220.3 143 74.8
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.8e-55 220.3 189 57.1
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 1.5e-54 217.2 178 61.2
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 5.9e-54 215.3 198 58.6
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 3.2e-52 209.5 195 54.9
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 3.6e-51 206.1 146 70.5
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 6.7e-50 201.8 187 54.5
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 1.3e-48 197.6 147 65.3
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 6.3e-48 195.3 182 58.2
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 8.2e-48 194.9 172 59.9
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 1.4e-47 194.1 168 58.3
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 5.9e-46 188.7 197 51.3
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 5.0e-45 185.7 163 60.1
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.5e-44 183.3 183 49.7
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 8.0e-43 178.3 197 52.8
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 1.4e-42 177.6 197 50.8
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.5e-41 174.1 183 47.0
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 3.7e-40 169.5 138 59.4
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 1.6e-38 164.1 132 60.6
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.7e-37 160.6 114 67.5
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 3.8e-37 159.5 166 51.8
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 1.1e-36 157.9 115 65.2
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 3.2e-36 156.4 206 38.8
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 5.2e-34 149.1 184 44.6
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 4.4e-33 146.0 117 64.1
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 6.3e-32 142.1 101 70.3
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 7.0e-31 138.7 72 93.1
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 1.6e-30 137.5 70 92.9
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 3.6e-27 126.3 102 62.7
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 5.2e-26 122.5 89 67.4
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 1.5e-25 120.9 89 64.0
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 2.8e-24 116.7 83 68.7
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 7.0e-23 112.1 83 65.1
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 7.0e-23 112.1 83 65.1
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.2e-22 111.3 85 62.4
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 2.9e-21 106.7 128 47.7
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.5e-20 104.4 113 52.2
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 1.9e-20 104.0 132 45.5
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 5.6e-20 102.4 120 49.2
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 2.1e-19 100.5 119 47.9
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.8e-19 100.1 191 36.1
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 5.8e-17 92.4 84 58.3
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 1.3e-13 81.3 135 40.7
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 1.3e-13 81.3 135 40.7
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.6e-11 74.3 66 54.5
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 4.0e-10 69.7 68 52.9
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 8.9e-10 68.6 56 62.5
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.9e-07 60.8 48 58.3
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.9e-07 60.8 48 58.3
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 5.4e-07 59.3 53 58.5
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.2e-06 58.2 43 62.8


User provided reference genes

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