Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0230761 Helianthus annuus HOM05D000022 ORTHO05D222203 3.4e-73 278.1 129 100.0
HanXRQChr08g0234681 Helianthus annuus HOM05D000022 ORTHO05D015642 4.5e-65 251.1 129 90.7
HanXRQChr08g0234851 Helianthus annuus HOM05D000022 ORTHO05D015642 1.6e-33 146.4 129 53.5
HanXRQChr13g0409511 Helianthus annuus HOM05D000022 ORTHO05D015642 9.2e-26 120.6 131 46.6
HanXRQChr13g0409531 Helianthus annuus HOM05D000022 ORTHO05D226026 5.9e-25 117.9 126 47.6
HanXRQChr05g0130571 Helianthus annuus HOM05D000022 ORTHO05D015642 8.0e-14 80.9 114 36.0
Ciclev10015972m.g Citrus clementina HOM05D000022 ORTHO05D000306 2.6e-12 75.9 127 32.3
HanXRQChr05g0130581 Helianthus annuus HOM05D000022 ORTHO05D015642 2.9e-11 72.4 118 32.2
VMungo1080G0766 Vigna mungo HOM05D000022 ORTHO05D000306 2.9e-11 72.4 126 37.3
MELO3C018796.2 Cucumis melo HOM05D000022 ORTHO05D000306 6.4e-11 71.2 129 32.6
Glyma.13G305800 Glycine max HOM05D000022 ORTHO05D000306 8.3e-11 70.9 86 45.3
Phvul.002G049400 Phaseolus vulgaris HOM05D000022 ORTHO05D000071 8.3e-11 70.9 86 41.9
VMungo1215G3361 Vigna mungo HOM05D000022 ORTHO05D000071 1.9e-10 69.7 86 40.7
ClCG02G001720 Citrullus lanatus HOM05D000022 ORTHO05D000306 3.2e-10 68.9 129 31.8
HanXRQChr03g0065141 Helianthus annuus HOM05D000022 ORTHO05D015642 3.2e-10 68.9 112 33.0
Eucgr.E04126 Eucalyptus grandis HOM05D000022 ORTHO05D000071 4.1e-10 68.6 127 32.3
Eucgr.E04124 Eucalyptus grandis HOM05D000022 ORTHO05D000071 5.4e-10 68.2 127 32.3
Eucgr.E03734 Eucalyptus grandis HOM05D000022 ORTHO05D000071 7.0e-10 67.8 127 33.1
Ciclev10018168m.g Citrus clementina HOM05D000022 ORTHO05D000306 1.2e-09 67.0 128 32.8
Phvul.005G112800 Phaseolus vulgaris HOM05D000022 ORTHO05D000306 1.6e-09 66.6 126 34.1
HanXRQChr05g0130611 Helianthus annuus HOM05D000022 ORTHO05D015642 2.0e-09 66.2 129 31.0
HanXRQChr17g0534401 Helianthus annuus HOM05D000022 ORTHO05D015642 2.0e-09 66.2 117 30.8
Prupe.4G028200 Prunus persica HOM05D000022 ORTHO05D000071 2.0e-09 66.2 130 33.1
Eucgr.E03717 Eucalyptus grandis HOM05D000022 ORTHO05D000071 2.7e-09 65.9 127 32.3
VMungo0720G1762 Vigna mungo HOM05D000022 ORTHO05D000071 2.7e-09 65.9 85 38.8
Aqoxy7G00438 Aquilegia oxysepala HOM05D000022 ORTHO05D000306 4.6e-09 65.1 130 30.8
Eucgr.E03723 Eucalyptus grandis HOM05D000022 ORTHO05D000071 4.6e-09 65.1 127 32.3
Glyma.20G139200 Glycine max HOM05D000022 ORTHO05D000071 6.0e-09 64.7 92 35.9
TWI38G1850 Tripterygium wilfordii HOM05D000022 ORTHO05D000306 6.0e-09 64.7 128 28.9
PSO832G1328 Papaver somniferum HOM05D000022 ORTHO05D000306 7.8e-09 64.3 126 32.5
Hma1.2p1_0729F.1_g209690 Hydrangea macrophylla HOM05D000022 ORTHO05D000306 1.0e-08 63.9 131 30.5
CiPaw.09G084600 Carya illinoinensis HOM05D000022 ORTHO05D000071 1.3e-08 63.5 127 29.9
RcHm_v2.0_Chr2g0158681 Rosa chinensis HOM05D000022 ORTHO05D000306 1.3e-08 63.5 130 33.8
Glyma.11G002800 Glycine max HOM05D000022 ORTHO05D000071 1.7e-08 63.2 95 36.8
MBI02_g43951_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D000071 1.7e-08 63.2 131 29.8
Eucgr.E03739 Eucalyptus grandis HOM05D000022 ORTHO05D000071 2.3e-08 62.8 127 29.9
Glyma.01G240800 Glycine max HOM05D000022 ORTHO05D000071 2.3e-08 62.8 95 36.8
vmacro15837 Vaccinium macrocarpon HOM05D000022 ORTHO05D000071 2.3e-08 62.8 99 34.3
Glyma.18G219600 Glycine max HOM05D000022 ORTHO05D010537 3.0e-08 62.4 127 32.3
Aqoxy1G03045 Aquilegia oxysepala HOM05D000022 ORTHO05D000071 3.9e-08 62.0 128 28.9
Dinv10917 Davidia involucrata HOM05D000022 ORTHO05D000306 5.0e-08 61.6 126 31.0
Eucgr.E04125 Eucalyptus grandis HOM05D000022 ORTHO05D000071 5.0e-08 61.6 127 29.1
Gohir.D09G070000 Gossypium hirsutum HOM05D000022 ORTHO05D000306 5.0e-08 61.6 131 34.4
Gorai.006G084400 Gossypium raimondii HOM05D000022 ORTHO05D000306 5.0e-08 61.6 131 34.4
TWI38G1721 Tripterygium wilfordii HOM05D000022 ORTHO05D000306 5.0e-08 61.6 128 28.1
arahy.Tifrunner.gnm1.ann1.AD1RX8 Arachis hypogaea HOM05D000022 ORTHO05D000071 6.6e-08 61.2 127 29.9
RcHm_v2.0_Chr2g0160251 Rosa chinensis HOM05D000022 ORTHO05D000306 6.6e-08 61.2 129 31.0
RcHm_v2.0_Chr5g0004161 Rosa chinensis HOM05D000022 ORTHO05D000071 6.6e-08 61.2 126 27.8
SEGI_22649 Sequoiadendron giganteum HOM05D000022 ORTHO05D000306 6.6e-08 61.2 98 37.8
Sc21g0001720 Simmondsia chinensis HOM05D000022 ORTHO05D000306 6.6e-08 61.2 133 31.6
Eucgr.E03719 Eucalyptus grandis HOM05D000022 ORTHO05D000071 8.6e-08 60.8 127 29.1
Manes.13G110600 Manihot esculenta HOM05D000022 ORTHO05D000306 8.6e-08 60.8 127 29.1
Phvul.007G049600 Phaseolus vulgaris HOM05D000022 ORTHO05D000071 8.6e-08 60.8 127 29.1
Hma1.2p1_0613F.1_g189320 Hydrangea macrophylla HOM05D000022 ORTHO05D000306 1.1e-07 60.5 127 33.1
Psat4g224640 Pisum sativum HOM05D000022 ORTHO05D000071 1.1e-07 60.5 93 36.6
Prupe.1G174500 Prunus persica HOM05D000022 ORTHO05D000071 1.5e-07 60.1 130 33.8
Prupe.3G110300 Prunus persica HOM05D000022 ORTHO05D000306 1.5e-07 60.1 96 37.5
Dinv17842 Davidia involucrata HOM05D000022 ORTHO05D000306 1.9e-07 59.7 129 28.7
Eucgr.D00835 Eucalyptus grandis HOM05D000022 ORTHO05D000306 1.9e-07 59.7 131 28.2
Phvul.002G049301 Phaseolus vulgaris HOM05D000022 ORTHO05D000071 1.9e-07 59.7 127 29.1
SEGI_30790 Sequoiadendron giganteum HOM05D000022 ORTHO05D000071 1.9e-07 59.7 98 36.7
Sc21g0001730 Simmondsia chinensis HOM05D000022 ORTHO05D000306 1.9e-07 59.7 130 32.3
Eucgr.E03049 Eucalyptus grandis HOM05D000022 ORTHO05D000071 2.5e-07 59.3 131 32.8
Manes.02G155900 Manihot esculenta HOM05D000022 ORTHO05D000306 2.5e-07 59.3 128 28.1
Manes.16G014800 Manihot esculenta HOM05D000022 ORTHO05D000071 2.5e-07 59.3 127 26.8
VMungo1215G2424 Vigna mungo HOM05D000022 ORTHO05D000071 2.5e-07 59.3 95 34.7
CSS0015773 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000071 3.3e-07 58.9 127 29.1
CSS0022291 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000071 3.3e-07 58.9 127 29.1
CSS0049803 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000306 3.3e-07 58.9 126 31.0
CiPaw.04G137700 Carya illinoinensis HOM05D000022 ORTHO05D000071 3.3e-07 58.9 131 32.1
HanXRQChr15g0473521 Helianthus annuus HOM05D000022 ORTHO05D017054 3.3e-07 58.9 128 33.6
Medtr5g005530 Medicago truncatula HOM05D000022 ORTHO05D000071 3.3e-07 58.9 95 35.8
Potri.011G029400 Populus trichocarpa HOM05D000022 ORTHO05D000306 3.3e-07 58.9 128 30.5
SEGI_28302 Sequoiadendron giganteum HOM05D000022 ORTHO05D000306 3.3e-07 58.9 89 36.0
CANSAT56G4236 Cannabis sativa HOM05D000022 ORTHO05D000071 4.3e-07 58.5 128 32.0
CAN.G569.48 Capsicum annuum HOM05D000022 ORTHO05D000071 4.3e-07 58.5 103 33.0
Eucgr.D00839 Eucalyptus grandis HOM05D000022 ORTHO05D000306 4.3e-07 58.5 127 28.3
Potri.004G023700 Populus trichocarpa HOM05D000022 ORTHO05D000071 4.3e-07 58.5 86 33.7
Prupe.3G110100 Prunus persica HOM05D000022 ORTHO05D000306 4.3e-07 58.5 96 36.5
SEGI_34827 Sequoiadendron giganteum HOM05D000022 ORTHO05D000071 4.3e-07 58.5 126 29.4
PGSC0003DMG400013756 Solanum tuberosum HOM05D000022 ORTHO05D000306 4.3e-07 58.5 72 40.3
Aqoxy1G03778 Aquilegia oxysepala HOM05D000022 ORTHO05D000071 5.6e-07 58.2 89 37.1
Aqoxy4G00852 Aquilegia oxysepala HOM05D000022 ORTHO05D000071 5.6e-07 58.2 134 31.3
CSS0024431 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000306 5.6e-07 58.2 126 31.0
Carub.0003s2204 Capsella rubella HOM05D000022 ORTHO05D000306 5.6e-07 58.2 86 37.2
ClCG02G001740 Citrullus lanatus HOM05D000022 ORTHO05D000306 5.6e-07 58.2 126 33.3
Manes.16G014901 Manihot esculenta HOM05D000022 ORTHO05D000071 5.6e-07 58.2 129 27.9
Potri.004G024140 Populus trichocarpa HOM05D000022 ORTHO05D000071 5.6e-07 58.2 86 33.7
RcHm_v2.0_Chr1g0328011 Rosa chinensis HOM05D000022 ORTHO05D000306 5.6e-07 58.2 130 35.4
TPR.G8967 Trifolium pratense HOM05D000022 ORTHO05D000071 5.6e-07 58.2 80 38.8
TAR629G0628 Trochodendron aralioides HOM05D000022 ORTHO05D000306 5.6e-07 58.2 105 37.1
CSS0036100 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000306 7.3e-07 57.8 121 30.6
Potri.011G029900 Populus trichocarpa HOM05D000022 ORTHO05D000306 7.3e-07 57.8 128 30.5
Potri.011G030400 Populus trichocarpa HOM05D000022 ORTHO05D000306 7.3e-07 57.8 128 30.5
QL11p013196 Quercus lobata HOM05D000022 ORTHO05D000306 7.3e-07 57.8 126 27.8
Sc05g0008780 Simmondsia chinensis HOM05D000022 ORTHO05D000306 7.3e-07 57.8 130 28.5
Thecc.06G210500 Theobroma cacao HOM05D000022 ORTHO05D000071 7.3e-07 57.8 131 32.1
CANSAT56G0384 Cannabis sativa HOM05D000022 ORTHO05D000071 9.5e-07 57.4 101 32.7
Eucgr.E03044 Eucalyptus grandis HOM05D000022 ORTHO05D000071 9.5e-07 57.4 131 31.3
Eucgr.E03576 Eucalyptus grandis HOM05D000022 ORTHO05D000071 9.5e-07 57.4 131 32.1
Eucgr.E04193 Eucalyptus grandis HOM05D000022 ORTHO05D000071 9.5e-07 57.4 127 26.8
Gohir.D09G070100 Gossypium hirsutum HOM05D000022 ORTHO05D000071 9.5e-07 57.4 131 33.6
Hma1.2p1_0613F.1_g189270 Hydrangea macrophylla HOM05D000022 ORTHO05D000306 9.5e-07 57.4 123 32.5
MD10G1312500 Malus domestica HOM05D000022 ORTHO05D000071 9.5e-07 57.4 127 34.6
Nn1g03686 Nelumbo nucifera HOM05D000022 ORTHO05D000071 9.5e-07 57.4 86 34.9
Rhsim02G0113800 Rhododendron simsii HOM05D000022 ORTHO05D005575 9.5e-07 57.4 95 35.8
Sopen12g001650 Solanum pennellii HOM05D000022 ORTHO05D000306 9.5e-07 57.4 126 31.0
GSVIVG01012618001 Vitis vinifera HOM05D000022 ORTHO05D000071 9.5e-07 57.4 92 33.7
Eucgr.E03741 Eucalyptus grandis HOM05D000022 ORTHO05D000071 1.2e-06 57.0 126 28.6
Rhsim02G0113300 Rhododendron simsii HOM05D000022 ORTHO05D005575 1.2e-06 57.0 95 35.8
Rhsim02G0113900 Rhododendron simsii HOM05D007279 ORTHO05D009212 1.2e-06 57.0 95 35.8
SEGI_13795 Sequoiadendron giganteum HOM05D000022 ORTHO05D000071 1.2e-06 57.0 97 32.0
Ah.14g088440 Amaranthus hybridus HOM05D000022 ORTHO05D000071 1.6e-06 56.6 128 28.9
AT3G21940 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.6e-06 56.6 96 33.3
CSS0012274 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000071 1.6e-06 56.6 127 29.1
Cpa.g.sc81.14 Carica papaya HOM05D000022 ORTHO05D000071 1.6e-06 56.6 130 31.5
CsaV3_7G003820 Cucumis sativus L. HOM05D000022 ORTHO05D000306 1.6e-06 56.6 114 31.6
Thhalv10021994m.g Eutrema salsugineum HOM05D000022 ORTHO05D000306 1.6e-06 56.6 59 44.1
Nitab4.5_0002345g0020 Nicotiana tabacum HOM05D000022 ORTHO05D000071 1.6e-06 56.6 95 36.8
Nitab4.5_0012745g0010 Nicotiana tabacum HOM05D000022 ORTHO05D000071 1.6e-06 56.6 95 35.8
PGR042G2884 Punica granatum HOM05D000022 ORTHO05D000306 1.6e-06 56.6 96 33.3
Sabra04G0013600 Salix brachista HOM05D000022 ORTHO05D000306 1.6e-06 56.6 70 38.6
TPR.G21127 Trifolium pratense HOM05D000022 ORTHO05D000071 1.6e-06 56.6 131 26.0
VMungo1383G1012 Vigna mungo HOM05D000022 ORTHO05D000071 1.6e-06 56.6 126 29.4
CSS0006303 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000306 2.1e-06 56.2 126 30.2
CSS0009853 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000306 2.1e-06 56.2 126 30.2
CSS0017395 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000071 2.1e-06 56.2 127 29.1
CSS0042839 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000071 2.1e-06 56.2 127 29.1
Cfa010202 Carpinus fangiana HOM05D000022 ORTHO05D000306 2.1e-06 56.2 96 34.4
CiPaw.09G085600 Carya illinoinensis HOM05D000022 ORTHO05D000071 2.1e-06 56.2 86 30.2
CiPaw.09G085700 Carya illinoinensis HOM05D000022 ORTHO05D000071 2.1e-06 56.2 86 31.4
AUR62012592 Chenopodium quinoa HOM05D000022 ORTHO05D000071 2.1e-06 56.2 98 32.7
Manes.12G077801 Manihot esculenta HOM05D000022 ORTHO05D000306 2.1e-06 56.2 126 31.0
Os05g0493100 Oryza sativa ssp. japonica HOM05D000022 ORTHO05D000071 2.1e-06 56.2 133 32.3
SEGI_21116 Sequoiadendron giganteum HOM05D000022 ORTHO05D000071 2.1e-06 56.2 107 33.6
SEGI_41121 Sequoiadendron giganteum HOM05D000022 ORTHO05D000071 2.1e-06 56.2 107 33.6
Thecc.06G181900 Theobroma cacao HOM05D000022 ORTHO05D000306 2.1e-06 56.2 129 30.2
CiPaw.09G081300 Carya illinoinensis HOM05D000022 ORTHO05D000306 2.8e-06 55.8 133 28.6
Ciclev10017818m.g Citrus clementina HOM05D000022 ORTHO05D000071 2.8e-06 55.8 88 36.4
Glyma.20G137500 Glycine max HOM05D000022 ORTHO05D000071 2.8e-06 55.8 98 32.7
Gorai.006G084500 Gossypium raimondii HOM05D000022 ORTHO05D000071 2.8e-06 55.8 131 32.8
Nitab4.5_0006238g0020 Nicotiana tabacum HOM05D000022 ORTHO05D000071 2.8e-06 55.8 95 33.7
QL10p045923 Quercus lobata HOM05D000022 ORTHO05D000071 2.8e-06 55.8 128 28.9
Thecc.06G210200 Theobroma cacao HOM05D000022 ORTHO05D000071 2.8e-06 55.8 128 32.0
CiPaw.09G074200 Carya illinoinensis HOM05D000022 ORTHO05D000306 3.6e-06 55.5 127 29.1
Hma1.2p1_0613F.1_g189300 Hydrangea macrophylla HOM05D000022 ORTHO05D000306 3.6e-06 55.5 127 32.3
PSO063G1000 Papaver somniferum HOM05D000022 ORTHO05D000306 3.6e-06 55.5 92 35.9
Thecc.06G212300 Theobroma cacao HOM05D000022 ORTHO05D000071 3.6e-06 55.5 129 32.6
Thecc.06G212900 Theobroma cacao HOM05D000022 ORTHO05D000071 3.6e-06 55.5 129 32.6
AUR62012633 Chenopodium quinoa HOM05D000022 ORTHO05D000071 4.7e-06 55.1 127 29.9
Haze_06711 Corylus avellana HOM05D000022 ORTHO05D000071 4.7e-06 55.1 89 33.7
MD05G1337400 Malus domestica HOM05D000022 ORTHO05D000306 4.7e-06 55.1 110 31.8
QL11p013263 Quercus lobata HOM05D000022 ORTHO05D000306 4.7e-06 55.1 127 29.1
QL11p013342 Quercus lobata HOM05D000022 ORTHO05D000306 4.7e-06 55.1 127 29.1
Sc21g0001750 Simmondsia chinensis HOM05D000022 ORTHO05D000306 4.7e-06 55.1 129 31.0
Solyc12g005720.1 Solanum lycopersicum HOM05D000022 ORTHO05D000306 4.7e-06 55.1 126 30.2
Sopen02g024800 Solanum pennellii HOM05D000022 ORTHO05D000071 4.7e-06 55.1 94 34.0
Thecc.06G213100 Theobroma cacao HOM05D000022 ORTHO05D000071 4.7e-06 55.1 128 31.2
Aqoxy1G00621 Aquilegia oxysepala HOM05D000022 ORTHO05D000306 6.2e-06 54.7 128 27.3
CANSAT64G2195 Cannabis sativa HOM05D000022 ORTHO05D000306 6.2e-06 54.7 123 30.9
Thhalv10022109m.g Eutrema salsugineum HOM05D000022 ORTHO05D000306 6.2e-06 54.7 102 35.3
Hma1.2p1_0729F.1_g209660 Hydrangea macrophylla HOM05D000022 ORTHO05D000306 6.2e-06 54.7 137 27.7
Potri.004G024000 Populus trichocarpa HOM05D000022 ORTHO05D000071 6.2e-06 54.7 86 33.7
QL10p045585 Quercus lobata HOM05D000022 ORTHO05D000071 6.2e-06 54.7 128 28.9
QL11p013298 Quercus lobata HOM05D000022 ORTHO05D000306 6.2e-06 54.7 127 29.1
RcHm_v2.0_Chr1g0328031 Rosa chinensis HOM05D000022 ORTHO05D000306 6.2e-06 54.7 130 32.3
Thecc.06G209700 Theobroma cacao HOM05D000022 ORTHO05D000306 6.2e-06 54.7 130 33.8
Actinidia12869 Actinidia chinensis HOM05D000022 ORTHO05D000306 8.1e-06 54.3 94 31.9
Eucgr.A01726 Eucalyptus grandis HOM05D000022 ORTHO05D000306 8.1e-06 54.3 136 30.1
Gohir.A09G069800 Gossypium hirsutum HOM05D000022 ORTHO05D000071 8.1e-06 54.3 98 34.7
QL11p013171 Quercus lobata HOM05D000022 ORTHO05D000306 8.1e-06 54.3 126 26.2
RhsimUnG0023600 Rhododendron simsii HOM05D000022 ORTHO05D000306 8.1e-06 54.3 86 34.9
RhsimUnG0184500 Rhododendron simsii HOM05D000022 ORTHO05D000306 8.1e-06 54.3 86 34.9
Sopen02g024790 Solanum pennellii HOM05D000022 ORTHO05D000071 8.1e-06 54.3 111 31.5
Thecc.06G209800 Theobroma cacao HOM05D000022 ORTHO05D000071 8.1e-06 54.3 130 33.1
Thecc.06G210000 Theobroma cacao HOM05D000022 ORTHO05D000306 8.1e-06 54.3 129 31.0
TPR.G5503 Trifolium pratense HOM05D000022 ORTHO05D000306 8.1e-06 54.3 134 29.9
TWI18G0128 Tripterygium wilfordii HOM05D000022 ORTHO05D000306 8.1e-06 54.3 88 34.1
TWI18G1227 Tripterygium wilfordii HOM05D000022 ORTHO05D000306 8.1e-06 54.3 103 32.0
HPP92_018387 Vanilla planifolia HOM05D000022 ORTHO05D000306 8.1e-06 54.3 127 27.6


User provided reference genes

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