Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0230631 Helianthus annuus HOM05D001398 ORTHO05D224484 5.0e-75 284.3 136 100.0
ECA233G1087 Erigeron canadensis HOM05D001398 ORTHO05D001467 1.0e-11 73.9 63 66.7
HanXRQChr13g0409431 Helianthus annuus HOM05D001398 ORTHO05D001467 8.8e-11 70.9 63 63.5
HanXRQChr07g0190031 Helianthus annuus HOM05D001398 ORTHO05D001467 1.1e-10 70.5 48 77.1
ECA240G3798 Erigeron canadensis HOM05D001398 ORTHO05D001467 3.3e-10 68.9 64 62.5
Nitab4.5_0000318g0040 Nicotiana tabacum HOM05D001398 ORTHO05D001467 2.2e-09 66.2 67 61.2
Nitab4.5_0002021g0030 Nicotiana tabacum HOM05D001398 ORTHO05D001467 2.2e-09 66.2 67 61.2
GSVIVG01035328001 Vitis vinifera HOM05D001398 ORTHO05D001467 2.8e-09 65.9 67 61.2
FAN15G2943 Fragaria x ananassa HOM05D001398 ORTHO05D001467 3.7e-09 65.5 67 61.2
SGA_v2.0_scaffold251G45074 Striga asiatica HOM05D001398 ORTHO05D001467 3.7e-09 65.5 48 70.8
Solyc08g065980.3 Solanum lycopersicum HOM05D001398 ORTHO05D001467 4.8e-09 65.1 67 59.7
Sopen08g019650 Solanum pennellii HOM05D001398 ORTHO05D001467 4.8e-09 65.1 67 59.7
arahy.Tifrunner.gnm1.ann1.SU7RHA Arachis hypogaea HOM05D001398 ORTHO05D001467 8.2e-09 64.3 67 59.7
arahy.Tifrunner.gnm1.ann1.Z6S83C Arachis hypogaea HOM05D001398 ORTHO05D001467 8.2e-09 64.3 67 59.7
FvH4_2g35120 Fragaria vesca HOM05D001398 ORTHO05D001467 8.2e-09 64.3 67 59.7
FAN27G0437 Fragaria x ananassa HOM05D001398 ORTHO05D001467 8.2e-09 64.3 67 59.7
TWI63G0116 Tripterygium wilfordii HOM05D001398 ORTHO05D001467 8.2e-09 64.3 67 59.7
CiPaw.07G201300 Carya illinoinensis HOM05D001398 ORTHO05D001467 1.1e-08 63.9 67 59.7
Haze_21935 Corylus avellana HOM05D001398 ORTHO05D001467 1.1e-08 63.9 67 59.7
HPP92_024509 Vanilla planifolia HOM05D001398 ORTHO05D001467 1.1e-08 63.9 67 58.2
HPP92_024511 Vanilla planifolia HOM05D001398 ORTHO05D001467 1.1e-08 63.9 67 58.2
Actinidia30295 Actinidia chinensis HOM05D001398 ORTHO05D001467 1.4e-08 63.5 67 58.2
CSS0003235 Camellia sinensis var. sinensis HOM05D001398 ORTHO05D001467 1.4e-08 63.5 67 58.2
CSS0037761 Camellia sinensis var. sinensis HOM05D001398 ORTHO05D001467 1.4e-08 63.5 67 58.2
Lsat_1_v5_gn_6_7660 Lactuca sativa HOM05D001398 ORTHO05D001467 1.4e-08 63.5 64 59.4
Prupe.1G443300 Prunus persica HOM05D001398 ORTHO05D001467 1.4e-08 63.5 67 59.7
QL12p040833 Quercus lobata HOM05D001398 ORTHO05D001467 1.4e-08 63.5 67 58.2
Sed0026188 Sechium edule HOM05D001398 ORTHO05D001467 1.4e-08 63.5 67 56.7
TWI34G1184 Tripterygium wilfordii HOM05D001398 ORTHO05D001467 1.4e-08 63.5 67 59.7
Zm00001eb337240 Zea mays HOM05D001398 ORTHO05D001467 1.4e-08 63.5 67 59.7
Ciclev10007250m.g Citrus clementina HOM05D001398 ORTHO05D001467 1.8e-08 63.2 67 59.7
Dinv27948 Davidia involucrata HOM05D001398 ORTHO05D001467 1.8e-08 63.2 67 59.7
Lalb_Chr08g0242861 Lupinus albus HOM05D001398 ORTHO05D001467 1.8e-08 63.2 67 58.2
Lalb_Chr11g0064611 Lupinus albus HOM05D001398 ORTHO05D001467 1.8e-08 63.2 67 58.2
Nn8g39001 Nelumbo nucifera HOM05D001398 ORTHO05D001467 1.8e-08 63.2 67 59.7
PSO832G0273 Papaver somniferum HOM05D001398 ORTHO05D001467 1.8e-08 63.2 67 59.7
Peaxi162Scf00840g00421 Petunia axillaris HOM05D001398 ORTHO05D001467 1.8e-08 63.2 67 59.7
Potri.006G234500 Populus trichocarpa HOM05D001398 ORTHO05D001467 1.8e-08 63.2 64 60.9
Potri.018G058300 Populus trichocarpa HOM05D001398 ORTHO05D001467 1.8e-08 63.2 64 60.9
RcHm_v2.0_Chr6g0306851 Rosa chinensis HOM05D001398 ORTHO05D001467 1.8e-08 63.2 67 59.7
Sabra06G0182900 Salix brachista HOM05D001398 ORTHO05D001467 1.8e-08 63.2 64 60.9
Sed0014290 Sechium edule HOM05D001398 ORTHO05D001467 1.8e-08 63.2 67 56.7
Zm00001eb121520 Zea mays HOM05D001398 ORTHO05D001467 1.8e-08 63.2 67 59.7
Aa31LG3G15500 Aethionema arabicum HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 58.2
AL6G22420 Arabidopsis lyrata HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 58.2
AT5G11700 Arabidopsis thaliana HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 58.2
Carub.0006s1020 Capsella rubella HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 58.2
CARHR201520 Cardamine hirsuta HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 58.2
Ca_15564_v3 Cicer arietinum L. HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 59.7
ClCG08G012030 Citrullus lanatus HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 56.7
COL.COLO4_21012 Corchorus olitorius HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 59.7
MELO3C011122.2 Cucumis melo HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 56.7
CsaV3_2G030630 Cucumis sativus L. HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 56.7
Duzib187G0836 Durio zibethinus HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 59.7
Thhalv10012440m.g Eutrema salsugineum HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 58.2
FAN20G1962 Fragaria x ananassa HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 59.7
Glyma.04G087300 Glycine max HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 59.7
Glyma.06G089000 Glycine max HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 59.7
Gohir.D13G193800 Gossypium hirsutum HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 59.7
Gorai.013G219900 Gossypium raimondii HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 59.7
Hma1.2p1_0603F.1_g187710 Hydrangea macrophylla HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 59.7
Lj1g0018851 Lotus japonicus HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 59.7
MBI04_g34115_MAGBIO Magnolia biondii HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 58.2
Medtr3g110460 Medicago truncatula HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 59.7
Phvul.009G112800 Phaseolus vulgaris HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 59.7
Sabra18G0054700 Salix brachista HOM05D001398 ORTHO05D001467 2.4e-08 62.8 64 60.9
Sp6g31910 Schrenkiella parvula HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 58.2
VMungo1309G0167 Vigna mungo HOM05D001398 ORTHO05D001467 2.4e-08 62.8 67 59.7
Cfa013393 Carpinus fangiana HOM05D001398 ORTHO05D001467 3.1e-08 62.4 67 58.2
AUR62009212 Chenopodium quinoa HOM05D001398 ORTHO05D001467 3.1e-08 62.4 67 58.2
AUR62040210 Chenopodium quinoa HOM05D001398 ORTHO05D001467 3.1e-08 62.4 67 58.2
Eucgr.C00621 Eucalyptus grandis HOM05D001398 ORTHO05D001467 3.1e-08 62.4 67 58.2
Gohir.A13G187000 Gossypium hirsutum HOM05D001398 ORTHO05D001467 3.1e-08 62.4 67 59.7
Lj8C561G9 Lonicera japonica HOM05D001398 ORTHO05D001467 3.1e-08 62.4 67 59.7
Oeu029398.1 Olea europaea HOM05D001398 ORTHO05D001467 3.1e-08 62.4 67 58.2
Oeu038832.1 Olea europaea HOM05D001398 ORTHO05D001467 3.1e-08 62.4 67 59.7
Psat5g020160 Pisum sativum HOM05D001398 ORTHO05D001467 3.1e-08 62.4 67 58.2
Hund19484 Selenicereus undatus HOM05D001398 ORTHO05D001467 3.1e-08 62.4 67 58.2
Thecc.09G049400 Theobroma cacao HOM05D001398 ORTHO05D001467 3.1e-08 62.4 67 59.7
Atru.chr7.2041 Acer truncatum HOM05D001398 ORTHO05D001467 4.1e-08 62.0 67 58.2
Migut.A00168 Erythranthe guttata HOM05D001398 ORTHO05D001467 4.1e-08 62.0 67 56.7
Manes.16G076600 Manihot esculenta HOM05D001398 ORTHO05D001467 4.1e-08 62.0 67 58.2
Os01g0187400 Oryza sativa ssp. japonica HOM05D001398 ORTHO05D001467 4.1e-08 62.0 67 58.2
PSO063G3976 Papaver somniferum HOM05D001398 ORTHO05D001467 4.1e-08 62.0 67 58.2
PGR031G3083 Punica granatum HOM05D001398 ORTHO05D001467 4.1e-08 62.0 67 58.2
SalBow4G2750 Salvia bowleyana HOM05D001398 ORTHO05D001467 4.1e-08 62.0 67 56.7
ATR0026G018 Amborella trichopoda HOM05D001398 ORTHO05D001467 5.3e-08 61.6 67 56.7
Manes.03G057400 Manihot esculenta HOM05D001398 ORTHO05D001467 5.3e-08 61.6 67 58.2
MD08G1108700 Malus domestica HOM05D001398 ORTHO05D001467 7.0e-08 61.2 67 58.2
MD15G1089200 Malus domestica HOM05D001398 ORTHO05D001467 7.0e-08 61.2 67 58.2
Aqoxy7G01355 Aquilegia oxysepala HOM05D001398 ORTHO05D001467 9.1e-08 60.8 67 58.2
BcaB01g05463 Brassica carinata HOM05D001398 ORTHO05D001467 9.1e-08 60.8 67 56.7
BcaB01g05465 Brassica carinata HOM05D001398 ORTHO05D001467 9.1e-08 60.8 67 56.7
BcaB08g37034 Brassica carinata HOM05D001398 ORTHO05D001467 9.1e-08 60.8 67 56.7
BcaC04g19201 Brassica carinata HOM05D001398 ORTHO05D001467 9.1e-08 60.8 67 56.7
A03p05120 Brassica napus HOM05D001398 ORTHO05D001467 9.1e-08 60.8 67 56.7
A10p26040 Brassica napus HOM05D001398 ORTHO05D001467 9.1e-08 60.8 67 56.7
C03p05910 Brassica napus HOM05D001398 ORTHO05D001467 9.1e-08 60.8 67 56.7
C09p65100 Brassica napus HOM05D001398 ORTHO05D001467 9.1e-08 60.8 67 56.7
BolC3t13103H Brassica oleracea HOM05D001398 ORTHO05D001467 9.1e-08 60.8 67 56.7
BolC9t59339H Brassica oleracea HOM05D001398 ORTHO05D001467 9.1e-08 60.8 67 56.7
BraA03t09850Z Brassica rapa HOM05D001398 ORTHO05D001467 9.1e-08 60.8 67 56.7
BraA10t44664Z Brassica rapa HOM05D001398 ORTHO05D001467 9.1e-08 60.8 67 56.7
HanXRQChr03g0078681 Helianthus annuus HOM05D001398 ORTHO05D001467 9.1e-08 60.8 64 56.2
THA.LOC104799183 Tarenaya hassleriana HOM05D001398 ORTHO05D001467 9.1e-08 60.8 67 56.7
MSTRG.11680 Avicennia marina HOM05D001398 ORTHO05D001467 1.2e-07 60.5 67 56.7
EL10Ac2g03957 Beta vulgaris HOM05D001398 ORTHO05D001467 1.2e-07 60.5 53 67.9
Duzib168G1016 Durio zibethinus HOM05D001398 ORTHO05D001467 1.2e-07 60.5 67 56.7
Gohir.D05G046300 Gossypium hirsutum HOM05D001398 ORTHO05D001467 1.2e-07 60.5 67 56.7
Sc23g0005480 Simmondsia chinensis HOM05D001398 ORTHO05D001467 1.2e-07 60.5 67 56.7
TPR.G12472 Trifolium pratense HOM05D001398 ORTHO05D001467 1.2e-07 60.5 66 56.1
MSTRG.25927 Avicennia marina HOM05D001398 ORTHO05D001467 1.5e-07 60.1 67 58.2
Gohir.A06G090800 Gossypium hirsutum HOM05D001398 ORTHO05D001467 1.5e-07 60.1 67 58.2
Gohir.D06G089700 Gossypium hirsutum HOM05D001398 ORTHO05D001467 1.5e-07 60.1 67 58.2
Gorai.010G103600 Gossypium raimondii HOM05D001398 ORTHO05D001467 1.5e-07 60.1 67 58.2
Lalb_Chr23g0269781 Lupinus albus HOM05D001398 ORTHO05D001467 1.5e-07 60.1 66 56.1
Nn6g35364 Nelumbo nucifera HOM05D001398 ORTHO05D001467 1.5e-07 60.1 67 58.2
Oeu011792.1 Olea europaea HOM05D001398 ORTHO05D001467 1.5e-07 60.1 67 58.2
PSO210G7706 Papaver somniferum HOM05D001398 ORTHO05D001467 1.5e-07 60.1 67 56.7
vmacro00178 Vaccinium macrocarpon HOM05D001398 ORTHO05D001467 1.5e-07 60.1 67 56.7
Ah.11g044460 Amaranthus hybridus HOM05D001398 ORTHO05D001467 2.0e-07 59.7 67 56.7
Cc08_g10050 Coffea canephora HOM05D001398 ORTHO05D001467 2.0e-07 59.7 67 56.7
Dinv23406 Davidia involucrata HOM05D001398 ORTHO05D001467 2.0e-07 59.7 49 71.4
DCAR_003056 Daucus carota HOM05D001398 ORTHO05D001467 2.6e-07 59.3 64 57.8
Zm00001eb283610 Zea mays HOM05D001398 ORTHO05D001467 2.6e-07 59.3 67 56.7
CARHR240930 Cardamine hirsuta HOM05D001398 ORTHO05D001467 3.4e-07 58.9 67 56.7
Lsat_1_v5_gn_5_48861 Lactuca sativa HOM05D001398 ORTHO05D001467 3.4e-07 58.9 66 57.6
AL7G18770 Arabidopsis lyrata HOM05D001398 ORTHO05D001467 4.5e-07 58.5 67 56.7
AT4G32920 Arabidopsis thaliana HOM05D001398 ORTHO05D001467 4.5e-07 58.5 67 56.7
Carub.0006s2369 Capsella rubella HOM05D001398 ORTHO05D001467 5.9e-07 58.2 67 55.2
Gohir.A05G044700 Gossypium hirsutum HOM05D001398 ORTHO05D001467 5.9e-07 58.2 67 55.2
Gorai.009G047700 Gossypium raimondii HOM05D001398 ORTHO05D001467 5.9e-07 58.2 67 55.2
SEGI_21021 Sequoiadendron giganteum HOM05D001398 ORTHO05D001467 5.9e-07 58.2 67 55.2
Ah.10g034660 Amaranthus hybridus HOM05D001398 ORTHO05D001467 7.7e-07 57.8 67 55.2
CDE06G2793 Ceratophyllum demersum HOM05D001398 ORTHO05D001467 7.7e-07 57.8 50 68.0
PSO210G1879 Papaver somniferum HOM05D001398 ORTHO05D001467 7.7e-07 57.8 67 55.2
Rhsim11G0048800 Rhododendron simsii HOM05D001398 ORTHO05D001467 7.7e-07 57.8 45 75.6
TAR626G0298 Trochodendron aralioides HOM05D001398 ORTHO05D001467 7.7e-07 57.8 53 66.0
Carub.0007s0756 Capsella rubella HOM05D001398 ORTHO05D001467 1.0e-06 57.4 67 55.2
Aa31sc131G30 Aethionema arabicum HOM05D001398 ORTHO05D001467 1.3e-06 57.0 67 53.7
Dinv42275 Davidia involucrata HOM05D001398 ORTHO05D001467 2.2e-06 56.2 54 63.0
BolC7t46385H Brassica oleracea HOM05D001398 ORTHO05D001467 5.0e-06 55.1 67 52.2
SEGI_08726 Sequoiadendron giganteum HOM05D001398 ORTHO05D001467 5.0e-06 55.1 66 48.5
Hma1.2p1_2337F.1_g320200 Hydrangea macrophylla HOM05D001398 ORTHO05D001467 6.5e-06 54.7 67 52.2
Rhsim03G0235500 Rhododendron simsii HOM05D001398 ORTHO05D001467 6.5e-06 54.7 67 53.7
Actinidia29897 Actinidia chinensis HOM05D001398 ORTHO05D001467 8.5e-06 54.3 67 52.2
A01p05360 Brassica napus HOM05D001398 ORTHO05D001467 8.5e-06 54.3 67 50.7
A03p61680 Brassica napus HOM05D001398 ORTHO05D001467 8.5e-06 54.3 67 50.7
C07p59410 Brassica napus HOM05D001398 ORTHO05D001467 8.5e-06 54.3 67 50.7
BraA01t00510Z Brassica rapa HOM05D001398 ORTHO05D001467 8.5e-06 54.3 67 50.7
BraA03t15207Z Brassica rapa HOM05D001398 ORTHO05D001467 8.5e-06 54.3 67 50.7
Thhalv10024217m.g Eutrema salsugineum HOM05D001398 ORTHO05D001467 8.5e-06 54.3 67 52.2


User provided reference genes

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