Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0229131 Helianthus annuus HOM05D003010 ORTHO05D003623 1.6e-42 175.6 86 100.0
HanXRQChr10g0316761 Helianthus annuus HOM05D003010 ORTHO05D003623 1.1e-27 126.3 80 73.8
ECA234G2671 Erigeron canadensis HOM05D003010 ORTHO05D010439 1.1e-22 109.8 78 65.4
Lsat_1_v5_gn_5_97941 Lactuca sativa HOM05D003010 ORTHO05D003623 5.0e-20 100.9 87 62.1
TAR625G0712 Trochodendron aralioides HOM05D003010 ORTHO05D010439 5.9e-13 77.4 92 44.6
DCAR_009212 Daucus carota HOM05D000639 ORTHO05D005966 1.3e-12 76.3 90 51.1
Prupe.7G238200 Prunus persica HOM05D009305 ORTHO05D010439 7.2e-11 70.5 90 51.1
CSS0003493 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 9.5e-11 70.1 91 48.4
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 2.8e-10 68.6 87 51.7
Atru.chr7.1234 Acer truncatum HOM05D009305 ORTHO05D010439 4.7e-10 67.8 91 46.2
CSS0005375 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 1.4e-09 66.2 91 46.2
CSS0010853 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 1.4e-09 66.2 91 46.2
CSS0012144 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 1.4e-09 66.2 91 46.2
FAN26G0439 Fragaria x ananassa HOM05D009305 ORTHO05D010439 1.8e-09 65.9 90 48.9
Aqoxy7G02055 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 3.0e-09 65.1 84 45.2
RcHm_v2.0_Chr2g0089271 Rosa chinensis HOM05D009305 ORTHO05D010439 6.8e-09 63.9 90 47.8
Cfa003337 Carpinus fangiana HOM05D003010 ORTHO05D010439 1.2e-08 63.2 87 48.3
QL02p087437 Quercus lobata HOM05D009305 ORTHO05D010439 2.0e-08 62.4 81 45.7
CiPaw.11G070300 Carya illinoinensis HOM05D003010 ORTHO05D003623 3.4e-08 61.6 77 46.8
Lj4g0006068 Lotus japonicus HOM05D003010 ORTHO05D010439 3.4e-08 61.6 90 45.6
Lj4g0025656 Lotus japonicus HOM05D003010 ORTHO05D010439 3.4e-08 61.6 90 45.6
CSS0046948 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 4.4e-08 61.2 95 45.3
Haze_25626 Corylus avellana HOM05D003010 ORTHO05D010439 4.4e-08 61.2 90 43.3
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 5.7e-08 60.8 85 40.0
Oeu017218.3 Olea europaea HOM05D003010 ORTHO05D003623 5.7e-08 60.8 77 46.8
PSO801G0586 Papaver somniferum HOM05D003010 ORTHO05D003623 5.7e-08 60.8 96 35.4
Sc18g0000820 Simmondsia chinensis HOM05D003010 ORTHO05D010439 5.7e-08 60.8 89 41.6
FvH4_7g26830 Fragaria vesca HOM05D003010 ORTHO05D003623 7.5e-08 60.5 84 40.5
FAN03G0814 Fragaria x ananassa HOM05D000255 ORTHO05D003623 7.5e-08 60.5 84 40.5
Gohir.D09G249800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 7.5e-08 60.5 90 42.2
Gorai.006G274200 Gossypium raimondii HOM05D003010 ORTHO05D003623 7.5e-08 60.5 90 42.2
FAN19G2542 Fragaria x ananassa HOM05D009305 ORTHO05D010439 9.8e-08 60.1 87 47.1
PSO339G5114 Papaver somniferum HOM05D003010 ORTHO05D010439 9.8e-08 60.1 95 35.8
Actinidia25899 Actinidia chinensis HOM05D003010 ORTHO05D003623 1.7e-07 59.3 86 40.7
RcHm_v2.0_Chr1g0373521 Rosa chinensis HOM05D003010 ORTHO05D003623 1.7e-07 59.3 88 43.2
Ah.12g054120 Amaranthus hybridus HOM05D003010 ORTHO05D003623 2.2e-07 58.9 96 37.5
GSVIVG01007344001 Vitis vinifera HOM05D003010 ORTHO05D003623 2.2e-07 58.9 78 48.7
Potri.008G015800 Populus trichocarpa HOM05D003010 ORTHO05D010439 2.8e-07 58.5 84 45.2
Solyc05g052080.1 Solanum lycopersicum HOM05D003010 ORTHO05D003623 2.8e-07 58.5 92 40.2
BolC1t02502H Brassica oleracea HOM05D000001 ORTHO05D000003 3.7e-07 58.2 83 41.0
Cc06_g08930 Coffea canephora HOM05D018231 ORTHO05D010439 3.7e-07 58.2 83 43.4
FAN01G3086 Fragaria x ananassa HOM05D003010 ORTHO05D003623 3.7e-07 58.2 80 41.2
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 3.7e-07 58.2 81 40.7
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 3.7e-07 58.2 83 43.4
EL10Ac5g12296 Beta vulgaris HOM05D003010 ORTHO05D003623 4.9e-07 57.8 89 40.4
COL.COLO4_37328 Corchorus olitorius HOM05D000255 ORTHO05D000935 4.9e-07 57.8 93 39.8
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 4.9e-07 57.8 88 43.2
Nitab4.5_0002211g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 4.9e-07 57.8 91 40.7
Nitab4.5_0002236g0070 Nicotiana tabacum HOM05D003010 ORTHO05D003623 4.9e-07 57.8 91 40.7
Sc07g0009120 Simmondsia chinensis HOM05D003010 ORTHO05D003623 4.9e-07 57.8 87 40.2
Haze_07981 Corylus avellana HOM05D003010 ORTHO05D003623 6.3e-07 57.4 84 44.0
FAN06G5032 Fragaria x ananassa HOM05D000255 ORTHO05D000935 6.3e-07 57.4 84 39.3
Sc01g0008150 Simmondsia chinensis HOM05D003010 ORTHO05D003623 6.3e-07 57.4 84 41.7
vmacro00038 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 6.3e-07 57.4 77 45.5
BcaNung00140 Brassica carinata HOM05D003010 ORTHO05D003623 8.3e-07 57.0 83 43.4
Thhalv10026660m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 8.3e-07 57.0 74 43.2
Manes.11G101800 Manihot esculenta HOM05D009305 ORTHO05D010439 8.3e-07 57.0 87 42.5
Actinidia02185 Actinidia chinensis HOM05D003010 ORTHO05D003623 1.1e-06 56.6 79 40.5
arahy.Tifrunner.gnm1.ann1.0EDZ2A Arachis hypogaea HOM05D009305 ORTHO05D010439 1.1e-06 56.6 91 40.7
CiPaw.04G169500 Carya illinoinensis HOM05D009305 ORTHO05D010439 1.1e-06 56.6 83 48.2
Gohir.A08G239500 Gossypium hirsutum HOM05D029830 ORTHO05D010439 1.1e-06 56.6 66 45.5
CANSAT56G3417 Cannabis sativa HOM05D003010 ORTHO05D003623 1.4e-06 56.2 85 37.6
Duzib205G1260 Durio zibethinus HOM05D003010 ORTHO05D003623 1.4e-06 56.2 81 38.3
Migut.F01206 Erythranthe guttata HOM05D003010 ORTHO05D003623 1.4e-06 56.2 81 39.5
Lalb_Chr13g0302051 Lupinus albus HOM05D009305 ORTHO05D010439 1.4e-06 56.2 86 46.5
MD06G1049300 Malus domestica HOM05D003010 ORTHO05D003623 1.4e-06 56.2 91 39.6
Nitab4.5_0009955g0020 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.4e-06 56.2 77 41.6
Sopen08g026560 Solanum pennellii HOM05D003010 ORTHO05D003623 1.4e-06 56.2 80 42.5
TWI39G0461 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 1.4e-06 56.2 83 38.6
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 1.8e-06 55.8 85 36.5
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 1.8e-06 55.8 83 41.0
FAN10G3636 Fragaria x ananassa HOM05D003010 ORTHO05D003623 1.8e-06 55.8 49 51.0
Gohir.A09G248900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.8e-06 55.8 69 43.5
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 1.8e-06 55.8 88 42.0
Gorai.004G278100 Gossypium raimondii HOM05D029830 ORTHO05D010439 1.8e-06 55.8 66 45.5
Nitab4.5_0000500g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.8e-06 55.8 77 41.6
Potri.008G015100 Populus trichocarpa HOM05D003010 ORTHO05D010439 1.8e-06 55.8 84 46.4
Prupe.2G271700 Prunus persica HOM05D003010 ORTHO05D003623 1.8e-06 55.8 47 51.1
AT2G35658 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 2.4e-06 55.5 91 39.6
Carub.0007s2449 Capsella rubella HOM05D003010 ORTHO05D003623 3.1e-06 55.1 51 51.0
CAN.G761.23 Capsicum annuum HOM05D003010 ORTHO05D003623 3.1e-06 55.1 81 42.0
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 3.1e-06 55.1 88 42.0
Lalb_Chr09g0324231 Lupinus albus HOM05D003010 ORTHO05D003623 3.1e-06 55.1 48 47.9
Hund14501 Selenicereus undatus HOM05D003010 ORTHO05D003623 3.1e-06 55.1 78 39.7
PGSC0003DMG400026255 Solanum tuberosum HOM05D003010 ORTHO05D003623 3.1e-06 55.1 78 43.6
BcaB01g05694 Brassica carinata HOM05D003010 ORTHO05D003623 4.1e-06 54.7 80 41.2
Carub.0004s1739 Capsella rubella HOM05D003010 ORTHO05D003623 4.1e-06 54.7 87 42.5
Lj8C48T14 Lonicera japonica HOM05D003010 ORTHO05D003623 4.1e-06 54.7 85 37.6
Peaxi162Scf00167g01022 Petunia axillaris HOM05D003010 ORTHO05D003623 4.1e-06 54.7 91 38.5
RcHm_v2.0_Chr7g0204931 Rosa chinensis HOM05D003010 ORTHO05D003623 4.1e-06 54.7 48 52.1
Solyc08g078060.3 Solanum lycopersicum HOM05D003010 ORTHO05D003623 4.1e-06 54.7 78 43.6
C03p03770 Brassica napus HOM05D003010 ORTHO05D003623 5.4e-06 54.3 80 40.0
FvH4_5g20070 Fragaria vesca HOM05D003010 ORTHO05D003623 5.4e-06 54.3 48 52.1
FAN04G3127 Fragaria x ananassa HOM05D003010 ORTHO05D003623 5.4e-06 54.3 48 52.1
FAN08G3583 Fragaria x ananassa HOM05D003010 ORTHO05D003623 5.4e-06 54.3 48 52.1
FAN13G2988 Fragaria x ananassa HOM05D003010 ORTHO05D003623 5.4e-06 54.3 48 52.1
FAN18G3981 Fragaria x ananassa HOM05D003010 ORTHO05D003623 5.4e-06 54.3 48 52.1
SGA_v2.0_scaffold60G20833 Striga asiatica HOM05D003010 ORTHO05D003623 5.4e-06 54.3 84 36.9
AL4G31750 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 7.0e-06 53.9 90 40.0
BcaC09g50429 Brassica carinata HOM05D003010 ORTHO05D003623 7.0e-06 53.9 83 41.0
BraA08t33266Z Brassica rapa HOM05D003010 ORTHO05D003623 7.0e-06 53.9 65 44.6
Cfa013595 Carpinus fangiana HOM05D000255 ORTHO05D000935 7.0e-06 53.9 86 34.9
Dinv21689 Davidia involucrata HOM05D003010 ORTHO05D003623 7.0e-06 53.9 79 43.0
Eucgr.A02926 Eucalyptus grandis HOM05D003010 ORTHO05D003623 7.0e-06 53.9 81 35.8
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 7.0e-06 53.9 84 40.5
AT5G07490 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 9.2e-06 53.5 49 49.0
BcaB01g05695 Brassica carinata HOM05D003010 ORTHO05D003623 9.2e-06 53.5 80 40.0
BcaB01g06045 Brassica carinata HOM05D003010 ORTHO05D003623 9.2e-06 53.5 80 40.0
BolC3t12913H Brassica oleracea HOM05D003010 ORTHO05D003623 9.2e-06 53.5 80 40.0
Haze_22213 Corylus avellana HOM05D000255 ORTHO05D000935 9.2e-06 53.5 86 36.0
Medtr1g090200 Medicago truncatula HOM05D003010 ORTHO05D003623 9.2e-06 53.5 81 39.5
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 9.2e-06 53.5 88 39.8
Potri.003G081900 Populus trichocarpa HOM05D003010 ORTHO05D003623 9.2e-06 53.5 72 43.1
Sabra03G0052800 Salix brachista HOM05D003010 ORTHO05D003623 9.2e-06 53.5 54 48.1
Sp6g35370 Schrenkiella parvula HOM05D003010 ORTHO05D003623 9.2e-06 53.5 49 49.0
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 9.2e-06 53.5 81 38.3


User provided reference genes

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