Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0229081 Helianthus annuus HOM05D003314 ORTHO05D004164 5.2e-69 264.2 132 100.0
HanXRQChr08g0229151 Helianthus annuus HOM05D003314 ORTHO05D004164 1.6e-57 226.1 128 90.6
ECA247G1043 Erigeron canadensis HOM05D003314 ORTHO05D004164 2.4e-50 202.2 128 80.5
HanXRQChr16g0518361 Helianthus annuus HOM05D003314 ORTHO05D004164 9.3e-50 200.3 115 90.4
Lsat_1_v5_gn_9_19140 Lactuca sativa HOM05D003314 ORTHO05D004164 2.8e-46 188.7 132 77.3
Lsat_1_v5_gn_5_172641 Lactuca sativa HOM05D003314 ORTHO05D004164 6.0e-41 171.0 124 70.2
ECA248G0301 Erigeron canadensis HOM05D003314 ORTHO05D004164 7.9e-41 170.6 127 70.1
TWI31G0289 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 8.7e-40 167.2 127 69.3
TAR623G0703 Trochodendron aralioides HOM05D003314 ORTHO05D004164 4.3e-39 164.9 129 68.2
Cpa.g.sc2.427 Carica papaya HOM05D003314 ORTHO05D004164 9.7e-39 163.7 129 67.4
MBI15_g29380_MAGBIO Magnolia biondii HOM05D003314 ORTHO05D004164 1.3e-38 163.3 129 68.2
PGR119G0996 Punica granatum HOM05D003314 ORTHO05D004164 2.8e-38 162.2 129 66.7
GSVIVG01024699001 Vitis vinifera HOM05D003314 ORTHO05D004164 2.8e-38 162.2 138 65.9
Dinv28665 Davidia involucrata HOM05D003314 ORTHO05D004164 4.8e-38 161.4 130 67.7
Eucgr.J01899 Eucalyptus grandis HOM05D003314 ORTHO05D004164 4.8e-38 161.4 129 65.1
Actinidia32631 Actinidia chinensis HOM05D003314 ORTHO05D004164 6.3e-38 161.0 130 67.7
Dinv09644 Davidia involucrata HOM05D003314 ORTHO05D004164 1.4e-37 159.8 127 66.9
HanXRQChr01g0011671 Helianthus annuus HOM05D003314 ORTHO05D004164 1.4e-37 159.8 126 65.9
Ciclev10027872m.g Citrus clementina HOM05D003314 ORTHO05D004164 1.8e-37 159.5 129 65.1
Haze_24369 Corylus avellana HOM05D003314 ORTHO05D004164 3.1e-37 158.7 125 68.0
MBI15_g21757_MAGBIO Magnolia biondii HOM05D003314 ORTHO05D004164 3.1e-37 158.7 129 67.4
Prupe.6G053800 Prunus persica HOM05D003314 ORTHO05D004164 3.1e-37 158.7 130 64.6
Rhsim13G0067500 Rhododendron simsii HOM05D003314 ORTHO05D004164 4.1e-37 158.3 126 66.7
Hma1.2p1_1981F.1_g309920 Hydrangea macrophylla HOM05D003314 ORTHO05D004164 5.3e-37 157.9 129 65.1
TWI79G1066 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 5.3e-37 157.9 127 66.1
CSS0022626 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 2.0e-36 156.0 128 64.8
CANSAT54G2389 Cannabis sativa HOM05D003314 ORTHO05D004164 2.6e-36 155.6 129 65.1
QL01p039122 Quercus lobata HOM05D003314 ORTHO05D004164 2.6e-36 155.6 130 65.4
ATR0681G099 Amborella trichopoda HOM05D003314 ORTHO05D004164 4.5e-36 154.8 130 63.1
MD03G1064800 Malus domestica HOM05D003314 ORTHO05D004164 4.5e-36 154.8 130 62.3
CSS0049027 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 5.9e-36 154.5 128 64.1
TAR636G3324 Trochodendron aralioides HOM05D003314 ORTHO05D004164 7.6e-36 154.1 128 64.8
MD11G1068800 Malus domestica HOM05D003314 ORTHO05D004164 1.0e-35 153.7 130 62.3
Lj1A130T38 Lonicera japonica HOM05D003314 ORTHO05D004164 1.3e-35 153.3 125 64.8
Nn2g10926 Nelumbo nucifera HOM05D003314 ORTHO05D004164 1.7e-35 152.9 136 61.8
CiPaw.13G074400 Carya illinoinensis HOM05D003314 ORTHO05D004164 2.2e-35 152.5 128 64.8
Nitab4.5_0000839g0080 Nicotiana tabacum HOM05D003314 ORTHO05D004164 2.2e-35 152.5 125 64.8
Peaxi162Scf00540g00022 Petunia axillaris HOM05D003314 ORTHO05D004164 6.5e-35 151.0 131 61.8
Atru.chr3.4168 Acer truncatum HOM05D003314 ORTHO05D004164 8.5e-35 150.6 129 62.8
MELO3C026830.2 Cucumis melo HOM05D003314 ORTHO05D004164 8.5e-35 150.6 126 63.5
Duzib168G0330 Durio zibethinus HOM05D003314 ORTHO05D004164 8.5e-35 150.6 121 66.1
Nitab4.5_0002352g0010 Nicotiana tabacum HOM05D003314 ORTHO05D004164 8.5e-35 150.6 125 64.0
Cfa011730 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.1e-34 150.2 123 65.0
CsaV3_6G016080 Cucumis sativus L. HOM05D003314 ORTHO05D004164 2.5e-34 149.1 126 63.5
RcHm_v2.0_Chr5g0070401 Rosa chinensis HOM05D003314 ORTHO05D004164 2.5e-34 149.1 127 63.8
Cc01_g14510 Coffea canephora HOM05D003314 ORTHO05D004164 3.2e-34 148.7 127 65.4
FAN21G3397 Fragaria x ananassa HOM05D003314 ORTHO05D004164 4.2e-34 148.3 133 62.4
FAN25G2774 Fragaria x ananassa HOM05D003314 ORTHO05D004164 4.2e-34 148.3 133 62.4
Aqoxy4G02458 Aquilegia oxysepala HOM05D003314 ORTHO05D004164 5.5e-34 147.9 134 60.4
vmacro02947 Vaccinium macrocarpon HOM05D003314 ORTHO05D004164 5.5e-34 147.9 128 63.3
CSS0023090 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 1.2e-33 146.7 128 61.7
CiPaw.14G057100 Carya illinoinensis HOM05D003314 ORTHO05D004164 1.6e-33 146.4 128 61.7
PSO170G0130 Papaver somniferum HOM05D003314 ORTHO05D004164 1.6e-33 146.4 129 61.2
PGSC0003DMG400030370 Solanum tuberosum HOM05D003314 ORTHO05D004164 1.6e-33 146.4 125 63.2
Duzib150G1198 Durio zibethinus HOM05D003314 ORTHO05D004164 2.1e-33 146.0 117 65.8
Sopen06g033530 Solanum pennellii HOM05D003314 ORTHO05D004164 2.1e-33 146.0 125 63.2
FvH4_3g39080 Fragaria vesca HOM05D003314 ORTHO05D004164 3.6e-33 145.2 128 63.3
Gohir.A03G028500 Gossypium hirsutum HOM05D003314 ORTHO05D004164 3.6e-33 145.2 135 60.0
Gohir.D03G140100 Gossypium hirsutum HOM05D003314 ORTHO05D004164 3.6e-33 145.2 135 60.0
THA.LOC104800751 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 3.6e-33 145.2 129 59.7
ClCG02G019450 Citrullus lanatus HOM05D003314 ORTHO05D004164 4.6e-33 144.8 127 62.2
Nitab4.5_0000752g0070 Nicotiana tabacum HOM05D003314 ORTHO05D004164 4.6e-33 144.8 126 62.7
PSO017G4706 Papaver somniferum HOM05D003314 ORTHO05D004164 4.6e-33 144.8 129 60.5
Solyc06g082150.4 Solanum lycopersicum HOM05D003314 ORTHO05D004164 4.6e-33 144.8 125 62.4
THA.LOC104815810 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 4.6e-33 144.8 129 59.7
CAN.G1095.9 Capsicum annuum HOM05D003314 ORTHO05D004164 6.1e-33 144.4 125 62.4
COL.COLO4_11092 Corchorus olitorius HOM05D003314 ORTHO05D004164 6.1e-33 144.4 121 64.5
Migut.N00780 Erythranthe guttata HOM05D003314 ORTHO05D004164 1.8e-32 142.9 130 58.5
Gorai.003G146900 Gossypium raimondii HOM05D003314 ORTHO05D004164 1.8e-32 142.9 135 59.3
Sed0000995 Sechium edule HOM05D003314 ORTHO05D004164 5.1e-32 141.4 128 61.7
Thecc.09G352300 Theobroma cacao HOM05D003314 ORTHO05D004164 5.1e-32 141.4 121 62.0
VMungo0540G1658 Vigna mungo HOM05D003314 ORTHO05D004164 6.7e-32 141.0 133 57.1
MSTRG.17878 Avicennia marina HOM05D003314 ORTHO05D004164 8.7e-32 140.6 131 58.8
TPR.G32920 Trifolium pratense HOM05D003314 ORTHO05D004164 2.5e-31 139.0 123 61.0
Oeu051518.1 Olea europaea HOM05D003314 ORTHO05D004164 5.7e-31 137.9 120 61.7
Psat5g157680 Pisum sativum HOM05D003314 ORTHO05D004164 5.7e-31 137.9 133 57.1
arahy.Tifrunner.gnm1.ann1.H173G9 Arachis hypogaea HOM05D003314 ORTHO05D004164 7.4e-31 137.5 121 60.3
DCAR_007359 Daucus carota HOM05D003314 ORTHO05D004164 7.4e-31 137.5 112 67.0
Lalb_Chr15g0083041 Lupinus albus HOM05D003314 ORTHO05D004164 9.7e-31 137.1 118 61.0
Manes.18G141800 Manihot esculenta HOM05D003314 ORTHO05D004164 9.7e-31 137.1 128 62.5
Glyma.11G169700 Glycine max HOM05D003314 ORTHO05D004164 1.3e-30 136.7 126 58.7
Glyma.18G060600 Glycine max HOM05D003314 ORTHO05D004164 1.3e-30 136.7 133 56.4
Migut.O00636 Erythranthe guttata HOM05D003314 ORTHO05D004164 1.7e-30 136.3 129 57.4
Potri.001G279100 Populus trichocarpa HOM05D003314 ORTHO05D004164 1.7e-30 136.3 132 62.9
MSTRG.12679 Avicennia marina HOM05D003314 ORTHO05D004164 2.2e-30 136.0 139 54.0
Medtr3g464770 Medicago truncatula HOM05D003314 ORTHO05D004164 4.8e-30 134.8 132 56.8
Ca_14964_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 8.2e-30 134.0 132 58.3
SalBow2G2371 Salvia bowleyana HOM05D003314 ORTHO05D004164 8.2e-30 134.0 129 58.1
Hund08127 Selenicereus undatus HOM05D003314 ORTHO05D004164 8.2e-30 134.0 124 58.9
BcaB03g13407 Brassica carinata HOM05D003314 ORTHO05D004164 2.4e-29 132.5 122 58.2
Phvul.006G069900 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 2.4e-29 132.5 127 58.3
Potri.009G073800 Populus trichocarpa HOM05D003314 ORTHO05D004164 3.1e-29 132.1 114 64.9
Sc21g0000200 Simmondsia chinensis HOM05D003314 ORTHO05D004164 3.1e-29 132.1 118 61.9
LjContig00141g0002673 Lotus japonicus HOM05D003314 ORTHO05D004164 4.1e-29 131.7 126 57.1
Aa31LG1G6350 Aethionema arabicum HOM05D003314 ORTHO05D004164 5.3e-29 131.3 130 56.2
SGA_v2.0_scaffold120G32908 Striga asiatica HOM05D003314 ORTHO05D004164 5.3e-29 131.3 128 58.6
Ah.01g002410 Amaranthus hybridus HOM05D003314 ORTHO05D004164 6.9e-29 131.0 111 60.4
BcaC07g42027 Brassica carinata HOM05D003314 ORTHO05D004164 6.9e-29 131.0 126 57.1
C08p50810 Brassica napus HOM05D003314 ORTHO05D004164 6.9e-29 131.0 126 57.1
BolC8t52609H Brassica oleracea HOM05D003314 ORTHO05D004164 6.9e-29 131.0 126 57.1
BraA09t42000Z Brassica rapa HOM05D003314 ORTHO05D004164 6.9e-29 131.0 126 57.1
Glyma.02G228700 Glycine max HOM05D003314 ORTHO05D004164 9.1e-29 130.6 127 57.5
arahy.Tifrunner.gnm1.ann1.99UL3I Arachis hypogaea HOM05D003314 ORTHO05D004164 1.2e-28 130.2 129 55.0
Thhalv10006901m.g Eutrema salsugineum HOM05D003314 ORTHO05D004164 2.0e-28 129.4 122 58.2
EL10Ac9g22391 Beta vulgaris HOM05D003314 ORTHO05D004164 2.6e-28 129.0 117 59.8
Sp1g05830 Schrenkiella parvula HOM05D003314 ORTHO05D004164 2.6e-28 129.0 122 57.4
Glyma.14G195700 Glycine max HOM05D003314 ORTHO05D004164 3.4e-28 128.6 133 54.9
Phvul.008G259400 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 5.9e-28 127.9 128 56.2
C08p02820 Brassica napus HOM05D003314 ORTHO05D004164 7.7e-28 127.5 123 57.7
BolC8t47077H Brassica oleracea HOM05D003314 ORTHO05D004164 7.7e-28 127.5 123 57.7
A08p35790 Brassica napus HOM05D003314 ORTHO05D004164 2.2e-27 125.9 123 56.9
A10p05630 Brassica napus HOM05D003314 ORTHO05D004164 2.2e-27 125.9 122 57.4
C05p05170 Brassica napus HOM05D003314 ORTHO05D004164 2.2e-27 125.9 122 57.4
BraA08t35486Z Brassica rapa HOM05D003314 ORTHO05D004164 2.2e-27 125.9 123 56.9
BraA10t42824Z Brassica rapa HOM05D003314 ORTHO05D004164 2.2e-27 125.9 122 57.4
CARHR006800 Cardamine hirsuta HOM05D003314 ORTHO05D004164 2.9e-27 125.6 122 55.7
BcaC07g42443 Brassica carinata HOM05D003314 ORTHO05D004164 3.8e-27 125.2 127 55.9
BolC5t29289H Brassica oleracea HOM05D003314 ORTHO05D004164 3.8e-27 125.2 122 57.4
BcaC05g24676 Brassica carinata HOM05D003314 ORTHO05D004164 5.0e-27 124.8 122 56.6
AUR62041217 Chenopodium quinoa HOM05D003314 ORTHO05D004164 8.5e-27 124.0 110 58.2
Lj6g0001244 Lotus japonicus HOM05D003314 ORTHO05D004164 1.1e-26 123.6 132 51.5
Carub.0001s0639 Capsella rubella HOM05D003314 ORTHO05D004164 2.5e-26 122.5 122 56.6
AUR62025049 Chenopodium quinoa HOM05D003314 ORTHO05D004164 2.5e-26 122.5 110 57.3
Psat2g055960 Pisum sativum HOM05D003314 ORTHO05D004164 3.2e-26 122.1 129 55.0
AL1G17230 Arabidopsis lyrata HOM05D003314 ORTHO05D004164 9.4e-26 120.6 129 53.5
CDE06G0062 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 1.6e-25 119.8 136 50.0
SGA_v2.0_scaffold146G36142 Striga asiatica HOM05D003314 ORTHO05D004164 2.1e-25 119.4 153 49.0
Ca_05629_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 2.7e-25 119.0 131 51.1
AT1G07110 Arabidopsis thaliana HOM05D003314 ORTHO05D004164 6.1e-25 117.9 122 55.7
Medtr5g071900 Medicago truncatula HOM05D003314 ORTHO05D004164 1.4e-24 116.7 133 50.4
Lalb_Chr17g0345221 Lupinus albus HOM05D003314 ORTHO05D004164 1.8e-24 116.3 123 52.0
CDE12G0129 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 5.1e-24 114.8 121 51.2
arahy.Tifrunner.gnm1.ann1.UVU1B7 Arachis hypogaea HOM05D003314 ORTHO05D004164 1.5e-23 113.2 131 51.1
arahy.Tifrunner.gnm1.ann1.Y0JIV8 Arachis hypogaea HOM05D003314 ORTHO05D004164 7.4e-23 110.9 118 52.5
Sabra09G0055800 Salix brachista HOM05D003314 ORTHO05D004164 3.7e-22 108.6 167 44.3
BcaB02g06745 Brassica carinata HOM05D003314 ORTHO05D004164 4.8e-22 108.2 95 60.0
Zm00001eb282250 Zea mays HOM05D003314 ORTHO05D004164 4.8e-22 108.2 131 48.1
Lj2A1086G63 Lonicera japonica HOM05D003314 ORTHO05D004164 2.4e-21 105.9 209 35.9
Os05g0164100 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 3.1e-21 105.5 130 48.5
Zm00001eb013550 Zea mays HOM05D003314 ORTHO05D004164 6.1e-17 91.3 118 46.6
SEGI_31563 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 4.8e-14 81.6 72 61.1
TPR.G10945 Trifolium pratense HOM05D003314 ORTHO05D004164 4.8e-14 81.6 71 56.3
AT3G30200 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 8.2e-14 80.9 94 51.1
SEGI_20353 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 1.2e-12 77.0 73 53.4
Mapoly0056s0097 Marchantia polymorpha HOM05D003314 ORTHO05D004164 1.1e-10 70.5 123 42.3
BcaB02g06747 Brassica carinata HOM05D003314 ORTHO05D004164 4.2e-10 68.6 58 58.6
HPP92_006766 Vanilla planifolia HOM05D003314 ORTHO05D004164 2.7e-09 65.9 80 43.8
Pp3c16_2340 Physcomitrium patens HOM05D003314 ORTHO05D004164 8.8e-08 60.8 100 39.0
SEGI_30930 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 1.7e-06 56.6 59 52.5
TAR633G0774 Trochodendron aralioides HOM05D003314 ORTHO05D051491 4.8e-06 55.1 55 56.4


User provided reference genes

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