Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 8.3e-304 1046.2 513 100.0
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 1.7e-195 686.4 441 76.2
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 5.4e-186 654.8 437 74.1
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 1.4e-181 640.2 513 62.8
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 2.0e-172 609.8 517 59.2
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 2.9e-171 605.9 518 59.3
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 4.9e-163 578.6 525 55.6
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 3.2e-162 575.9 508 56.1
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 4.1e-162 575.5 512 56.2
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 4.1e-162 575.5 512 56.2
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 6.2e-158 561.6 521 55.7
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 8.9e-157 557.8 521 56.2
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 2.6e-156 556.2 516 56.0
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 5.8e-156 555.1 517 55.5
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 7.1e-154 548.1 508 54.7
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 1.3e-152 543.9 513 53.2
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 1.7e-152 543.5 514 54.9
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 2.3e-152 543.1 514 54.5
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 3.0e-152 542.7 515 52.4
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 3.9e-152 542.3 491 56.8
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 1.5e-151 540.4 512 54.1
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 4.3e-151 538.9 520 53.3
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 4.7e-150 535.4 519 52.6
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 4.7e-150 535.4 513 53.2
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 1.1e-149 534.3 518 52.1
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 8.9e-149 531.2 497 54.7
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 5.8e-148 528.5 493 55.0
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 7.6e-148 528.1 518 52.9
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 6.4e-147 525.0 499 53.5
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 2.1e-145 520.0 510 52.0
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 3.5e-145 519.2 519 53.0
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 5.1e-144 515.4 517 52.8
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 5.6e-143 511.9 537 50.3
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 1.3e-142 510.8 489 55.0
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 2.1e-142 510.0 514 49.8
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 1.5e-140 503.8 512 52.0
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.7e-139 500.4 519 49.7
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 2.2e-139 500.0 518 49.6
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 3.8e-139 499.2 522 49.4
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 4.9e-139 498.8 519 50.5
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 1.1e-138 497.7 514 51.0
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.9e-138 496.9 518 49.2
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 2.4e-138 496.5 518 49.2
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 5.4e-138 495.4 549 49.9
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.6e-137 493.8 522 49.0
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 7.9e-137 491.5 518 49.4
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 7.9e-137 491.5 519 49.7
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 5.1e-136 488.8 522 48.3
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 5.1e-136 488.8 522 48.3
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 1.1e-135 487.6 518 50.2
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 5.6e-135 485.3 516 48.1
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 1.3e-134 484.2 519 48.7
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 2.8e-134 483.0 519 50.5
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 4.8e-134 482.3 516 49.8
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 6.2e-134 481.9 517 49.5
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 9.0e-133 478.0 522 47.3
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 1.5e-132 477.2 523 48.9
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 2.6e-132 476.5 523 48.8
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 1.7e-131 473.8 448 55.8
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 2.9e-131 473.0 516 49.4
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 4.9e-131 472.2 527 49.5
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 1.4e-130 470.7 537 48.0
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 1.9e-130 470.3 521 47.4
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 1.6e-129 467.2 518 48.6
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 3.1e-125 453.0 451 52.1
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 1.3e-123 447.6 453 49.9
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 1.2e-121 441.0 445 51.5
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 1.4e-117 427.6 520 45.6
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 5.3e-117 425.6 511 46.2
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 1.2e-116 424.5 518 45.8
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 5.0e-115 419.1 415 50.8
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 1.1e-114 417.9 516 44.4
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 2.7e-113 413.3 503 45.1
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 4.6e-113 412.5 518 44.0
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 6.1e-113 412.1 514 43.6
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 6.7e-112 408.7 529 44.6
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 1.6e-110 404.1 527 42.9
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 2.0e-108 397.1 387 52.5
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 5.9e-108 395.6 574 40.6
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 8.5e-107 391.7 560 40.9
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 8.2e-102 375.2 446 44.4
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 9.7e-95 351.7 418 45.5
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 1.1e-93 348.2 518 40.3
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 4.0e-88 329.7 526 39.2
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 1.1e-87 328.2 639 36.6
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 8.2e-86 322.0 458 40.8
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 1.4e-85 321.2 542 38.9
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 4.2e-82 309.7 264 60.6
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 3.4e-79 300.1 379 44.1
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 5.7e-79 299.3 379 44.1
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 9.1e-77 292.0 533 36.6
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 1.6e-65 254.6 265 50.6
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 6.1e-65 252.7 229 55.0
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 2.4e-61 240.7 268 50.7
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 5.9e-60 236.1 301 43.2
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 3.4e-55 220.3 523 31.2
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 1.1e-40 172.2 218 43.1
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 1.7e-38 164.9 235 40.4
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 4.6e-36 156.8 272 33.5
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 2.0e-31 141.4 359 30.4
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 2.6e-31 141.0 214 36.4
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 9.9e-31 139.0 203 41.9
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.4e-29 135.2 198 38.9
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 1.4e-29 135.2 360 30.6
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 9.6e-26 122.5 502 26.5
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.6e-20 105.1 136 40.4
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 9.6e-18 95.9 158 36.7
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 2.0e-15 88.2 163 31.3
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 6.7e-11 73.2 84 42.9
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 2.5e-10 71.2 91 39.6


User provided reference genes

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