Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1985.7 1010 100.0
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1646.7 1004 83.0
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1615.9 1003 81.7
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1517.7 1017 77.4
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1340.9 1012 68.2
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1323.9 1013 67.0
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1311.2 1011 66.5
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1308.1 1000 67.4
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1300.8 1011 66.1
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1294.6 1011 66.2
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1293.5 993 68.0
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1293.5 1011 65.5
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1288.5 1011 65.5
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1279.6 1012 66.4
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1276.2 1020 65.5
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1272.7 1009 64.0
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1271.5 1011 65.1
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1271.5 1009 64.2
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1271.5 1009 64.8
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1269.6 1014 65.4
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1268.8 1015 65.3
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1268.8 1010 64.3
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1268.1 1016 64.8
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1267.7 1011 64.5
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1266.5 990 65.8
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1263.4 1010 63.8
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1262.3 1058 62.7
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1260.4 1010 63.7
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1258.0 1016 63.5
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1257.7 1076 62.5
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1256.1 1012 63.7
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1254.2 1012 63.3
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1251.5 1011 64.5
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1247.3 986 64.9
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1245.0 996 63.7
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1242.6 1011 64.4
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1242.3 996 63.5
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1239.6 1008 64.0
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1235.7 1012 63.3
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1224.9 1029 62.4
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1222.6 1014 62.8
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1217.6 1010 62.4
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1209.9 1011 61.8
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1204.5 1011 61.9
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1200.7 1015 61.4
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1199.9 1013 61.2
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1199.9 1075 59.9
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1199.1 1015 61.4
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1195.6 1015 62.3
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1194.9 1011 60.5
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1194.9 1011 61.0
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1182.2 1010 61.2
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1181.4 1010 60.6
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1181.0 1007 60.3
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1180.6 1011 60.8
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1178.7 1010 60.9
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1177.5 1011 59.8
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1177.2 1010 59.8
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1176.8 1012 60.2
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1176.4 1012 60.0
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1176.0 1014 59.7
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1173.7 1011 60.5
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1170.6 1013 60.1
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1170.6 1015 60.3
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1166.0 1012 59.6
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1160.2 1012 59.2
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1156.0 1013 59.7
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1153.3 1011 58.9
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1152.9 1011 58.6
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1150.2 1009 59.2
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1145.2 1011 58.0
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1140.2 1011 57.8
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1138.6 1011 57.8
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1138.6 1017 59.0
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1137.5 1021 57.8
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1137.1 1011 57.8
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1137.1 1011 57.8
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1134.4 1010 58.6
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1099.3 981 59.5
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1087.4 1018 56.8
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 9.5e-304 1047.0 783 67.8
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 3.8e-300 1035.0 1015 55.0
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 5.6e-296 1021.1 796 66.8
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 9.6e-296 1020.4 1017 52.6
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 5.6e-288 994.6 783 65.6
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 1.1e-286 990.3 1016 52.4
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 1.5e-269 933.3 691 67.0
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 2.5e-259 899.4 610 73.1
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 4.2e-259 898.7 982 51.2
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 7.9e-258 894.4 594 75.6
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.0e-236 824.3 982 47.0
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 7.5e-232 808.1 1026 44.2
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-228 797.3 1028 43.6
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 3.4e-224 782.7 772 53.4
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 1.8e-222 776.9 875 47.0
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 2.0e-221 773.5 750 53.6
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.7e-215 753.8 1014 44.0
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 5.4e-206 722.2 504 71.0
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 1.0e-204 718.0 504 71.0
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 3.6e-186 656.4 1040 38.6
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 2.7e-181 640.2 1027 39.6
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.3e-180 637.9 528 63.3
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.6e-178 630.9 572 59.4
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 9.0e-177 625.2 453 70.9
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 9.6e-171 605.1 434 70.5
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 1.0e-164 585.1 1015 36.3
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 1.1e-163 581.6 547 56.3
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 1.7e-159 567.8 511 58.5
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 7.1e-150 535.8 511 56.2
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 1.8e-140 504.6 438 62.1
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 5.3e-137 493.0 461 55.7
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 6.7e-124 449.5 625 41.9
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 4.2e-118 430.3 1100 29.8
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 9.8e-115 419.1 269 80.3
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 7.0e-113 412.9 237 84.0
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 1.3e-111 408.7 533 45.6
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 8.3e-106 389.4 249 78.7
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 5.2e-92 343.6 422 45.3
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.1e-89 335.9 295 59.0
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.2e-77 295.8 318 50.3
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.7e-74 285.4 318 49.1
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 1.7e-74 285.4 456 40.4
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 3.7e-74 284.3 332 46.7
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 7.1e-57 226.9 391 39.4
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 6.2e-53 213.8 273 45.8
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 5.8e-51 207.2 273 45.1
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 2.2e-50 205.3 110 90.0
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 5.1e-47 194.1 163 62.6
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 5.1e-47 194.1 163 62.6
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 3.8e-42 177.9 738 26.3
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 2.5e-41 175.3 191 52.4
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 3.2e-41 174.9 228 44.3
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 3.2e-41 174.9 745 25.2
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 1.1e-38 166.4 400 33.2
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 1.9e-38 165.6 396 32.6
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 1.4e-36 159.5 315 36.8
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 1.6e-32 146.0 752 23.4
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 1.0e-31 143.3 162 50.0
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 5.1e-31 141.0 116 65.5
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 4.1e-28 131.3 121 62.8
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 1.0e-26 126.7 275 34.2
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 5.0e-26 124.4 76 82.9
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 6.1e-24 117.5 76 75.0
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 2.9e-18 98.6 89 53.9
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 1.9e-17 95.9 443 25.7
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 2.5e-17 95.5 60 78.3
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 4.7e-16 91.3 189 30.7
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 7.9e-16 90.5 176 32.4
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 9.7e-14 83.6 65 61.5
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 7.0e-12 77.4 45 80.0
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 2.0e-11 75.9 70 58.6
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 2.6e-11 75.5 139 38.1
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.0e-10 73.6 49 67.3
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 9.4e-09 67.0 91 34.1
Sabra19G0131700 Salix brachista HOM05D000080 ORTHO05D004954 4.0e-07 61.6 103 43.7
A07p45260 Brassica napus HOM05D002927 ORTHO05D003841 8.8e-07 60.5 264 26.1
BraA07t32030Z Brassica rapa HOM05D002927 ORTHO05D003841 1.5e-06 59.7 264 25.8
C06p54110 Brassica napus HOM05D002927 ORTHO05D003841 2.6e-06 58.9 264 25.8
BolC6t40424H Brassica oleracea HOM05D002927 ORTHO05D003841 2.6e-06 58.9 264 25.8
AL2G41090 Arabidopsis lyrata HOM05D002927 ORTHO05D003841 3.3e-06 58.5 264 25.8
Carub.0002s2716 Capsella rubella HOM05D002927 ORTHO05D003841 4.4e-06 58.2 264 25.8
CARHR074830 Cardamine hirsuta HOM05D002927 ORTHO05D003841 5.7e-06 57.8 264 25.0
Thhalv10018100m.g Eutrema salsugineum HOM05D002927 ORTHO05D003841 5.7e-06 57.8 264 25.4
Sp5g35400 Schrenkiella parvula HOM05D002927 ORTHO05D003841 5.7e-06 57.8 264 25.8
AT1G80410 Arabidopsis thaliana HOM05D002927 ORTHO05D003841 7.5e-06 57.4 264 25.0
A02p23570 Brassica napus HOM05D002927 ORTHO05D003841 7.5e-06 57.4 264 26.1
BraA02t07350Z Brassica rapa HOM05D002927 ORTHO05D003841 7.5e-06 57.4 264 26.1


User provided reference genes

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