Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 4.5e-121 438.0 224 100.0
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 6.6e-80 301.2 201 77.1
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 1.9e-74 283.1 201 71.6
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 2.0e-73 279.6 201 71.6
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 1.3e-67 260.4 204 65.7
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 1.7e-67 260.0 201 65.2
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 2.9e-67 259.2 201 65.2
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 2.9e-67 259.2 201 66.7
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 3.7e-67 258.8 201 64.7
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 8.3e-67 257.7 201 64.7
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 1.4e-66 256.9 204 63.7
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 1.4e-66 256.9 201 63.7
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 9.2e-66 254.2 201 63.7
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 1.2e-65 253.8 201 63.7
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 1.6e-65 253.4 201 62.7
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 2.1e-65 253.1 226 58.8
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 2.7e-65 252.7 201 64.7
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 6.0e-65 251.5 202 63.9
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 1.0e-64 250.8 201 63.2
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 1.7e-64 250.0 201 65.2
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 3.0e-64 249.2 201 64.2
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 5.1e-64 248.4 201 64.7
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 6.6e-64 248.1 201 62.7
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 8.6e-64 247.7 201 64.7
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 8.6e-64 247.7 201 64.7
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 8.6e-64 247.7 201 61.2
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 8.6e-64 247.7 201 61.2
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 4.3e-63 245.4 201 60.7
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 5.6e-63 245.0 201 60.7
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 7.3e-63 244.6 201 64.2
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 9.5e-63 244.2 201 61.7
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 1.2e-62 243.8 201 61.2
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 1.6e-62 243.4 201 60.7
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 1.6e-62 243.4 201 61.2
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 2.1e-62 243.0 201 60.7
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 2.8e-62 242.7 201 60.7
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 3.6e-62 242.3 206 57.8
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 3.6e-62 242.3 201 59.7
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 4.7e-62 241.9 201 61.2
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 4.7e-62 241.9 201 60.7
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 6.2e-62 241.5 201 63.7
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 6.2e-62 241.5 201 61.2
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 8.1e-62 241.1 201 60.7
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 8.1e-62 241.1 201 60.7
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 1.8e-61 240.0 202 59.9
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 1.8e-61 240.0 202 59.9
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 1.8e-61 240.0 202 59.9
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 1.8e-61 240.0 201 61.2
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 2.3e-61 239.6 202 59.9
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 2.3e-61 239.6 202 59.9
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 2.3e-61 239.6 202 59.9
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 2.3e-61 239.6 201 58.2
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 3.1e-61 239.2 201 60.2
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 4.0e-61 238.8 201 60.2
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 4.0e-61 238.8 201 60.2
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 4.0e-61 238.8 201 60.2
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 5.2e-61 238.4 201 60.7
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 6.8e-61 238.0 201 59.2
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 8.9e-61 237.7 201 59.7
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.2e-60 237.3 201 59.7
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 1.2e-60 237.3 201 60.2
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 1.5e-60 236.9 202 58.9
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 1.5e-60 236.9 201 58.7
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 1.5e-60 236.9 201 58.7
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 1.5e-60 236.9 202 59.4
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 1.5e-60 236.9 202 58.9
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 2.0e-60 236.5 201 59.2
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 2.6e-60 236.1 201 60.2
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 3.4e-60 235.7 202 60.4
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 4.4e-60 235.3 202 57.9
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 9.9e-60 234.2 201 59.7
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 9.9e-60 234.2 202 58.9
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 1.3e-59 233.8 201 57.7
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 2.9e-59 232.6 201 58.2
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 6.4e-59 231.5 216 56.5
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 6.4e-59 231.5 202 58.4
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 6.4e-59 231.5 201 59.2
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 8.4e-59 231.1 201 57.7
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 1.1e-58 230.7 201 59.2
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 2.4e-58 229.6 201 57.2
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 2.4e-58 229.6 201 58.7
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 4.1e-58 228.8 201 58.2
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 4.1e-58 228.8 194 61.3
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 4.1e-58 228.8 204 55.9
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 5.4e-58 228.4 201 55.2
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 7.1e-58 228.0 201 59.2
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 7.1e-58 228.0 201 55.2
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.2e-57 227.3 175 63.4
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.2e-57 227.3 175 63.4
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 1.6e-57 226.9 201 56.7
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 2.1e-57 226.5 201 57.2
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 2.7e-57 226.1 201 57.2
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 3.5e-57 225.7 201 57.7
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 6.0e-57 224.9 201 56.2
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 7.8e-57 224.6 201 55.2
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 5.1e-56 221.9 201 56.7
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 5.1e-56 221.9 201 57.2
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 5.1e-56 221.9 201 57.2
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 1.1e-55 220.7 201 58.2
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 1.5e-55 220.3 202 56.4
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 3.3e-55 219.2 201 57.2
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 3.3e-55 219.2 201 55.7
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 5.6e-55 218.4 201 55.7
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 2.1e-54 216.5 201 55.2
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 4.0e-53 212.2 201 53.7
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 5.2e-53 211.8 198 53.5
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 1.5e-52 210.3 201 55.2
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 1.3e-51 207.2 201 51.7
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 4.9e-51 205.3 201 50.7
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 1.4e-50 203.8 201 51.7
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 9.3e-42 174.5 201 47.3
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 3.9e-40 169.1 202 46.0
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 2.5e-39 166.4 205 45.9
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 6.2e-38 161.8 206 45.6
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 5.3e-37 158.7 201 43.8
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 1.4e-26 124.0 211 37.4
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 2.0e-20 103.6 86 60.5
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 1.1e-15 87.8 86 55.8
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 1.7e-11 73.9 74 52.7
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 2.2e-11 73.6 87 46.0
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.1e-10 71.2 95 42.1


User provided reference genes

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