Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0228481 Helianthus annuus HOM05D003559 ORTHO05D003896 3.6e-55 218.0 111 100.0
HanXRQChr04g0109851 Helianthus annuus HOM05D003559 ORTHO05D003896 1.7e-20 102.8 55 98.2
HanXRQChr16g0502041 Helianthus annuus HOM05D003559 ORTHO05D003896 5.9e-13 77.8 70 65.7
Lsat_1_v5_gn_4_111820 Lactuca sativa HOM05D003559 ORTHO05D003896 2.2e-12 75.9 57 75.4
Nitab4.5_0000646g0080 Nicotiana tabacum HOM05D000436 ORTHO05D003896 2.2e-12 75.9 51 78.4
Nitab4.5_0001432g0150 Nicotiana tabacum HOM05D000436 ORTHO05D003896 3.8e-12 75.1 46 87.0
Nitab4.5_0005020g0040 Nicotiana tabacum HOM05D000436 ORTHO05D003896 3.8e-12 75.1 46 87.0
HanXRQChr09g0269861 Helianthus annuus HOM05D003559 ORTHO05D003896 8.5e-12 73.9 58 72.4
Solyc06g069310.3 Solanum lycopersicum HOM05D003559 ORTHO05D003896 1.1e-11 73.6 46 84.8
Sopen06g026570 Solanum pennellii HOM05D003559 ORTHO05D003896 1.1e-11 73.6 46 84.8
PGSC0003DMG400004076 Solanum tuberosum HOM05D003559 ORTHO05D003896 1.1e-11 73.6 46 84.8
PGSC0003DMG400023065 Solanum tuberosum HOM05D003559 ORTHO05D003896 1.1e-11 73.6 46 82.6
Actinidia18952 Actinidia chinensis HOM05D003559 ORTHO05D003896 1.9e-11 72.8 60 68.3
Lsat_1_v5_gn_1_15700 Lactuca sativa HOM05D003559 ORTHO05D003896 3.2e-11 72.0 46 84.8
Nitab4.5_0000208g0120 Nicotiana tabacum HOM05D000436 ORTHO05D003896 3.2e-11 72.0 48 79.2
CAN.G587.71 Capsicum annuum HOM05D003559 ORTHO05D003896 5.5e-11 71.2 46 82.6
Dinv38604 Davidia involucrata HOM05D003559 ORTHO05D003896 5.5e-11 71.2 48 81.2
HanXRQChr09g0269851 Helianthus annuus HOM05D003559 ORTHO05D003896 5.5e-11 71.2 56 71.4
Hma1.2p1_0340F.1_g130100 Hydrangea macrophylla HOM05D003559 ORTHO05D003896 5.5e-11 71.2 46 84.8
Peaxi162Scf00017g03040 Petunia axillaris HOM05D003559 ORTHO05D003896 7.2e-11 70.9 48 79.2
Sopen12g018530 Solanum pennellii HOM05D003559 ORTHO05D003896 7.2e-11 70.9 46 80.4
SGA_v2.0_scaffold33G13364 Striga asiatica HOM05D003559 ORTHO05D003896 7.2e-11 70.9 46 80.4
Ca_02523_v3 Cicer arietinum L. HOM05D003559 ORTHO05D003896 9.4e-11 70.5 48 79.2
vmacro12201 Vaccinium macrocarpon HOM05D003559 ORTHO05D003896 9.4e-11 70.5 70 61.4
DCAR_023145 Daucus carota HOM05D003559 ORTHO05D003896 1.2e-10 70.1 50 78.0
Solyc12g038390.1 Solanum lycopersicum HOM05D003559 ORTHO05D003896 1.2e-10 70.1 46 80.4
GSVIVG01008215001 Vitis vinifera HOM05D003559 ORTHO05D003896 1.2e-10 70.1 48 79.2
Aqoxy3G03860 Aquilegia oxysepala HOM05D003559 ORTHO05D003896 2.1e-10 69.3 46 78.3
Duzib205G0101 Durio zibethinus HOM05D003559 ORTHO05D003896 2.1e-10 69.3 51 76.5
Nitab4.5_0006132g0010 Nicotiana tabacum HOM05D000436 ORTHO05D003896 2.1e-10 69.3 48 77.1
PGR083G0538 Punica granatum HOM05D003559 ORTHO05D003896 2.1e-10 69.3 48 79.2
RhsimUnG0225600 Rhododendron simsii HOM05D003559 ORTHO05D003896 2.1e-10 69.3 48 79.2
CSS0003476 Camellia sinensis var. sinensis HOM05D003559 ORTHO05D003896 2.7e-10 68.9 50 76.0
CSS0029845 Camellia sinensis var. sinensis HOM05D003559 ORTHO05D003896 2.7e-10 68.9 50 76.0
ECA232G4761 Erigeron canadensis HOM05D003559 ORTHO05D003896 2.7e-10 68.9 70 61.4
Lj9A433T100 Lonicera japonica HOM05D003559 ORTHO05D003896 2.7e-10 68.9 52 73.1
Oeu001006.1 Olea europaea HOM05D003559 ORTHO05D003896 2.7e-10 68.9 46 80.4
Oeu008246.1 Olea europaea HOM05D003559 ORTHO05D003896 2.7e-10 68.9 46 80.4
CiPaw.16G082800 Carya illinoinensis HOM05D003559 ORTHO05D003896 3.6e-10 68.6 48 77.1
SGA_v2.0_scaffold33G13365 Striga asiatica HOM05D003559 ORTHO05D003896 3.6e-10 68.6 45 80.0
VMungo1215G3031 Vigna mungo HOM05D003559 ORTHO05D003896 3.6e-10 68.6 46 78.3
Lj4g0027798 Lotus japonicus HOM05D003559 ORTHO05D003896 6.1e-10 67.8 59 71.2
Peaxi162Scf00013g00829 Petunia axillaris HOM05D003559 ORTHO05D003896 6.1e-10 67.8 46 80.4
TWI81G0966 Tripterygium wilfordii HOM05D003559 ORTHO05D003896 6.1e-10 67.8 47 83.0
Cc04_g07710 Coffea canephora HOM05D003559 ORTHO05D003896 7.9e-10 67.4 64 67.2
Migut.D01587 Erythranthe guttata HOM05D003559 ORTHO05D003896 1.0e-09 67.0 46 78.3
EL10Ac2g03673 Beta vulgaris HOM05D003559 ORTHO05D003896 1.4e-09 66.6 51 82.4
Ciclev10022641m.g Citrus clementina HOM05D003559 ORTHO05D003896 1.4e-09 66.6 49 79.6
Manes.01G022100 Manihot esculenta HOM05D003559 ORTHO05D003896 1.4e-09 66.6 49 79.6
THA.LOC104800935 Tarenaya hassleriana HOM05D003559 ORTHO05D003896 1.4e-09 66.6 48 79.2
Actinidia31038 Actinidia chinensis HOM05D000436 ORTHO05D003896 1.8e-09 66.2 49 77.6
Lalb_Chr08g0235361 Lupinus albus HOM05D003559 ORTHO05D003896 1.8e-09 66.2 48 75.0
MSTRG.9000 Avicennia marina HOM05D003559 ORTHO05D003896 2.3e-09 65.9 48 77.1
Cpa.g.sc13.75 Carica papaya HOM05D003559 ORTHO05D003896 2.3e-09 65.9 61 67.2
Gohir.A09G244200 Gossypium hirsutum HOM05D003559 ORTHO05D003896 2.3e-09 65.9 49 77.6
Gohir.D09G245100 Gossypium hirsutum HOM05D003559 ORTHO05D003896 2.3e-09 65.9 49 77.6
Gorai.006G269400 Gossypium raimondii HOM05D003559 ORTHO05D003896 2.3e-09 65.9 49 77.6
Lalb_Chr23g0274121 Lupinus albus HOM05D003559 ORTHO05D003896 2.3e-09 65.9 56 67.9
MBI16_g06573_MAGBIO Magnolia biondii HOM05D003559 ORTHO05D003896 2.3e-09 65.9 48 75.0
Hund03255 Selenicereus undatus HOM05D003559 ORTHO05D003896 2.3e-09 65.9 50 78.0
TPR.G2820 Trifolium pratense HOM05D003559 ORTHO05D003896 2.3e-09 65.9 49 77.6
Atru.chr9.708 Acer truncatum HOM05D003559 ORTHO05D003896 3.0e-09 65.5 52 76.9
Cfa019843 Carpinus fangiana HOM05D003559 ORTHO05D003896 3.0e-09 65.5 51 78.4
Haze_18574 Corylus avellana HOM05D003559 ORTHO05D003896 3.0e-09 65.5 51 78.4
Lj5A141T87 Lonicera japonica HOM05D003559 ORTHO05D003896 3.0e-09 65.5 47 80.9
Manes.05G117400 Manihot esculenta HOM05D003559 ORTHO05D003896 3.0e-09 65.5 49 77.6
Sp2g24030 Schrenkiella parvula HOM05D003559 ORTHO05D003896 3.0e-09 65.5 49 75.5
TAR371G0504 Trochodendron aralioides HOM05D003559 ORTHO05D003896 3.0e-09 65.5 56 67.9
CAN.G781.4 Capsicum annuum HOM05D003559 ORTHO05D003896 3.9e-09 65.1 48 79.2
Solyc03g114400.3 Solanum lycopersicum HOM05D003559 ORTHO05D003896 3.9e-09 65.1 48 77.1
Sopen03g033500 Solanum pennellii HOM05D003559 ORTHO05D003896 3.9e-09 65.1 48 77.1
PGSC0003DMG401024603 Solanum tuberosum HOM05D003559 ORTHO05D003896 3.9e-09 65.1 48 79.2
arahy.Tifrunner.gnm1.ann1.B1KVMA Arachis hypogaea HOM05D003559 ORTHO05D003896 5.1e-09 64.7 49 77.6
COL.COLO4_32191 Corchorus olitorius HOM05D003559 ORTHO05D003896 5.1e-09 64.7 52 75.0
Duzib068G0274 Durio zibethinus HOM05D003559 ORTHO05D003896 5.1e-09 64.7 52 75.0
Nn3g17669 Nelumbo nucifera HOM05D003559 ORTHO05D003896 5.1e-09 64.7 46 76.1
QL10p022343 Quercus lobata HOM05D003559 ORTHO05D003896 5.1e-09 64.7 49 77.6
Thecc.03G115000 Theobroma cacao HOM05D003559 ORTHO05D003896 5.1e-09 64.7 52 75.0
TWI60G0348 Tripterygium wilfordii HOM05D003559 ORTHO05D003896 5.1e-09 64.7 49 77.6
CSS0016530 Camellia sinensis var. sinensis HOM05D003559 ORTHO05D003896 6.7e-09 64.3 61 65.6
CANSAT80G0220 Cannabis sativa HOM05D003559 ORTHO05D003896 8.8e-09 63.9 50 76.0
Phvul.003G179300 Phaseolus vulgaris HOM05D003559 ORTHO05D003896 8.8e-09 63.9 49 75.5
TAR622G1039 Trochodendron aralioides HOM05D003559 ORTHO05D003896 8.8e-09 63.9 58 67.2
TAR702G0002 Trochodendron aralioides HOM05D003559 ORTHO05D003896 8.8e-09 63.9 58 67.2
ClCG06G015130 Citrullus lanatus HOM05D003559 ORTHO05D003896 1.1e-08 63.5 47 76.6
Glyma.17G123600 Glycine max HOM05D003559 ORTHO05D003896 1.1e-08 63.5 52 75.0
Gohir.D07G061000 Gossypium hirsutum HOM05D003559 ORTHO05D003896 1.1e-08 63.5 52 73.1
Gorai.001G064700 Gossypium raimondii HOM05D003559 ORTHO05D003896 1.1e-08 63.5 52 73.1
Phvul.009G201500 Phaseolus vulgaris HOM05D003559 ORTHO05D003896 1.1e-08 63.5 61 67.2
Sed0008282 Sechium edule HOM05D003559 ORTHO05D003896 1.1e-08 63.5 47 76.6
Hund19381 Selenicereus undatus HOM05D003559 ORTHO05D003896 1.1e-08 63.5 56 71.4
VMungo1309G2871 Vigna mungo HOM05D003559 ORTHO05D003896 1.1e-08 63.5 61 67.2
Ah.11g044090 Amaranthus hybridus HOM05D003559 ORTHO05D003896 1.5e-08 63.2 51 76.5
Glyma.04G145000 Glycine max HOM05D003559 ORTHO05D003896 1.5e-08 63.2 51 74.5
Lj1g0005945 Lotus japonicus HOM05D003559 ORTHO05D003896 1.9e-08 62.8 57 68.4
Lalb_Chr07g0178501 Lupinus albus HOM05D003559 ORTHO05D003896 1.9e-08 62.8 52 75.0
Peaxi162Scf00119g00126 Petunia axillaris HOM05D003559 ORTHO05D003896 1.9e-08 62.8 46 73.9
TWI15G0382 Tripterygium wilfordii HOM05D003559 ORTHO05D003896 1.9e-08 62.8 52 76.9
ECA247G3802 Erigeron canadensis HOM05D003559 ORTHO05D003896 2.5e-08 62.4 48 75.0
Glyma.06G209000 Glycine max HOM05D003559 ORTHO05D003896 2.5e-08 62.4 49 75.5
Aqoxy3G00433 Aquilegia oxysepala HOM05D003559 ORTHO05D003896 3.3e-08 62.0 55 69.1
Nn4g23671 Nelumbo nucifera HOM05D003559 ORTHO05D003896 3.3e-08 62.0 46 73.9
unitig_21.g20428 Utricularia gibba HOM05D003559 ORTHO05D003896 3.3e-08 62.0 53 66.0
BcaB04g19888 Brassica carinata HOM05D003559 ORTHO05D003896 4.3e-08 61.6 50 74.0
BcaC04g23480 Brassica carinata HOM05D003559 ORTHO05D003896 4.3e-08 61.6 50 74.0
A09p07060 Brassica napus HOM05D003559 ORTHO05D003896 4.3e-08 61.6 50 74.0
C09p07910 Brassica napus HOM05D003559 ORTHO05D003896 4.3e-08 61.6 50 74.0
BolC9t53704H Brassica oleracea HOM05D003559 ORTHO05D003896 4.3e-08 61.6 50 74.0
BraA09t36354Z Brassica rapa HOM05D003559 ORTHO05D003896 4.3e-08 61.6 50 74.0
MELO3C017276.2 Cucumis melo HOM05D003559 ORTHO05D003896 5.7e-08 61.2 51 68.6
CsaV3_1G003510 Cucumis sativus L. HOM05D003559 ORTHO05D003896 5.7e-08 61.2 51 68.6
Glyma.05G015100 Glycine max HOM05D003559 ORTHO05D003896 5.7e-08 61.2 50 78.0
Lalb_Chr13g0302501 Lupinus albus HOM05D003559 ORTHO05D003896 5.7e-08 61.2 52 73.1
Medtr4g112380 Medicago truncatula HOM05D003559 ORTHO05D003896 5.7e-08 61.2 49 73.5
Potri.015G052800 Populus trichocarpa HOM05D003559 ORTHO05D003896 5.7e-08 61.2 47 74.5
Sabra15G0077200 Salix brachista HOM05D003559 ORTHO05D003896 5.7e-08 61.2 47 74.5
Zm00001eb042490 Zea mays HOM05D003559 ORTHO05D003896 5.7e-08 61.2 57 63.2
Zm00001eb178500 Zea mays HOM05D003559 ORTHO05D003896 5.7e-08 61.2 49 71.4
ATR0815G014 Amborella trichopoda HOM05D003559 ORTHO05D003896 7.4e-08 60.8 55 65.5
SEGI_05393 Sequoiadendron giganteum HOM05D003559 ORTHO05D003896 9.7e-08 60.5 45 73.3
Sc23g0004420 Simmondsia chinensis HOM05D003559 ORTHO05D003896 9.7e-08 60.5 50 78.0
Sc09g0007430 Simmondsia chinensis HOM05D003559 ORTHO05D003896 1.7e-07 59.7 47 80.9
PSO017G5533 Papaver somniferum HOM05D003559 ORTHO05D003896 2.2e-07 59.3 46 73.9
PSO063G2115 Papaver somniferum HOM05D003559 ORTHO05D003896 2.2e-07 59.3 46 73.9
Sabra12G0041700 Salix brachista HOM05D003559 ORTHO05D003896 2.8e-07 58.9 49 71.4
Medtr2g056000 Medicago truncatula HOM05D003559 ORTHO05D003896 3.7e-07 58.5 47 68.1
Psat1g027000 Pisum sativum HOM05D003559 ORTHO05D003896 3.7e-07 58.5 47 68.1
Sed0024201 Sechium edule HOM05D003559 ORTHO05D003896 3.7e-07 58.5 48 70.8
unitig_744.g24408 Utricularia gibba HOM05D003559 ORTHO05D003896 3.7e-07 58.5 53 64.2
CDE04G0696 Ceratophyllum demersum HOM05D003559 ORTHO05D003896 4.8e-07 58.2 47 72.3
Eucgr.B00669 Eucalyptus grandis HOM05D003559 ORTHO05D003896 4.8e-07 58.2 59 61.0
Prupe.5G214400 Prunus persica HOM05D003559 ORTHO05D003896 6.3e-07 57.8 49 73.5
TPR.G20734 Trifolium pratense HOM05D000436 ORTHO05D003896 6.3e-07 57.8 83 48.2
CDE06G1451 Ceratophyllum demersum HOM05D003559 ORTHO05D003896 8.2e-07 57.4 49 71.4
Ca_02637_v3 Cicer arietinum L. HOM05D000436 ORTHO05D003896 8.2e-07 57.4 47 68.1
Hma1.2p1_0595F.1_g186080 Hydrangea macrophylla HOM05D003559 ORTHO05D003896 1.1e-06 57.0 85 48.2
Aa31LG11G2580 Aethionema arabicum HOM05D003559 ORTHO05D003896 1.4e-06 56.6 50 72.0
MBI10_g18305_MAGBIO Magnolia biondii HOM05D003559 ORTHO05D003896 1.4e-06 56.6 57 63.2
MD06G1209300 Malus domestica HOM05D003559 ORTHO05D003896 1.4e-06 56.6 49 73.5
Aa31LG3G18350 Aethionema arabicum HOM05D003559 ORTHO05D003896 1.8e-06 56.2 47 74.5
AL6G18600 Arabidopsis lyrata HOM05D003559 ORTHO05D003896 1.8e-06 56.2 47 74.5
AT5G08190 Arabidopsis thaliana HOM05D003559 ORTHO05D003896 1.8e-06 56.2 47 74.5
BcaB08g37276 Brassica carinata HOM05D003559 ORTHO05D003896 1.8e-06 56.2 49 73.5
Carub.0006s0709 Capsella rubella HOM05D003559 ORTHO05D003896 1.8e-06 56.2 47 74.5
CARHR204990 Cardamine hirsuta HOM05D003559 ORTHO05D003896 1.8e-06 56.2 47 74.5
Thhalv10014894m.g Eutrema salsugineum HOM05D003559 ORTHO05D003896 1.8e-06 56.2 47 74.5
Oeu031816.1 Olea europaea HOM05D003559 ORTHO05D003896 1.8e-06 56.2 46 71.7
Sp6g34750 Schrenkiella parvula HOM05D003559 ORTHO05D003896 1.8e-06 56.2 47 74.5
BcaC03g13210 Brassica carinata HOM05D003559 ORTHO05D003896 2.4e-06 55.8 47 74.5
C02p03450 Brassica napus HOM05D003559 ORTHO05D003896 2.4e-06 55.8 47 74.5
Carub.0006s2088 Capsella rubella HOM05D003559 ORTHO05D003896 2.4e-06 55.8 50 70.0
CARHR190440 Cardamine hirsuta HOM05D003559 ORTHO05D003896 2.4e-06 55.8 50 70.0
Thhalv10005056m.g Eutrema salsugineum HOM05D003559 ORTHO05D003896 2.4e-06 55.8 50 70.0
MD14G1219800 Malus domestica HOM05D003559 ORTHO05D003896 2.4e-06 55.8 49 73.5
SEGI_10246 Sequoiadendron giganteum HOM05D003559 ORTHO05D003896 2.4e-06 55.8 45 68.9
Duzib084G1140 Durio zibethinus HOM05D003559 ORTHO05D003896 3.1e-06 55.5 55 67.3
RcHm_v2.0_Chr7g0184331 Rosa chinensis HOM05D003559 ORTHO05D003896 3.1e-06 55.5 49 69.4
vmacro17645 Vaccinium macrocarpon HOM05D003559 ORTHO05D003896 3.1e-06 55.5 79 49.4
AL6G34280 Arabidopsis lyrata HOM05D003559 ORTHO05D003896 5.3e-06 54.7 47 72.3
BcaC03g13209 Brassica carinata HOM05D003559 ORTHO05D003896 5.3e-06 54.7 47 72.3
BraA02t04945Z Brassica rapa HOM05D003559 ORTHO05D003896 6.9e-06 54.3 47 72.3
FvH4_5g12901 Fragaria vesca HOM05D003559 ORTHO05D003896 6.9e-06 54.3 49 67.3
FAN08G2954 Fragaria x ananassa HOM05D003559 ORTHO05D003896 6.9e-06 54.3 49 67.3
FAN13G1448 Fragaria x ananassa HOM05D003559 ORTHO05D003896 6.9e-06 54.3 49 67.3
FAN18G1277 Fragaria x ananassa HOM05D003559 ORTHO05D003896 6.9e-06 54.3 49 67.3


User provided reference genes

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