Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 9.8e-28 125.9 58 100.0
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 9.8e-28 125.9 58 100.0
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 2.9e-27 124.4 58 98.3
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 4.4e-20 100.5 58 74.1
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 1.7e-19 98.6 58 79.3
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 2.9e-19 97.8 58 77.6
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 8.3e-19 96.3 58 72.4
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 1.1e-18 95.9 58 77.6
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 1.1e-18 95.9 58 75.9
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 1.4e-18 95.5 58 72.4
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 1.9e-18 95.1 58 75.9
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 3.2e-18 94.4 58 72.4
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 4.1e-18 94.0 58 74.1
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 4.1e-18 94.0 58 74.1
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 5.4e-18 93.6 57 73.7
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 7.0e-18 93.2 57 73.7
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 7.0e-18 93.2 58 72.4
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 9.2e-18 92.8 58 72.4
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 9.2e-18 92.8 58 72.4
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 1.6e-17 92.0 58 70.7
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 2.0e-17 91.7 58 70.7
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 2.7e-17 91.3 58 72.4
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 2.7e-17 91.3 58 70.7
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 3.5e-17 90.9 58 69.0
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 3.5e-17 90.9 58 70.7
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 3.5e-17 90.9 58 70.7
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 6.0e-17 90.1 58 69.0
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 6.0e-17 90.1 58 69.0
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 6.0e-17 90.1 58 69.0
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 7.8e-17 89.7 58 69.0
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 7.8e-17 89.7 58 74.1
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 7.8e-17 89.7 58 72.4
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 7.8e-17 89.7 58 72.4
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 1.0e-16 89.4 56 69.6
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 1.0e-16 89.4 58 72.4
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 1.3e-16 89.0 58 70.7
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.3e-16 88.2 58 69.0
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.3e-16 88.2 58 70.7
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 3.0e-16 87.8 58 67.2
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 3.0e-16 87.8 57 64.9
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 3.0e-16 87.8 58 69.0
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 5.0e-16 87.0 58 67.2
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 6.6e-16 86.7 58 63.8
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 6.6e-16 86.7 58 67.2
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 6.6e-16 86.7 58 67.2
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 6.6e-16 86.7 58 67.2
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 6.6e-16 86.7 58 70.7
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 8.6e-16 86.3 58 69.0
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 1.1e-15 85.9 58 67.2
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 1.1e-15 85.9 58 65.5
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.5e-15 85.5 58 67.2
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.9e-15 85.1 58 69.0
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 1.9e-15 85.1 58 69.0
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.9e-15 85.1 58 69.0
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 1.9e-15 85.1 58 69.0
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 1.9e-15 85.1 57 66.7
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 2.5e-15 84.7 57 61.4
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 2.5e-15 84.7 58 65.5
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 3.3e-15 84.3 58 69.0
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 5.6e-15 83.6 58 67.2
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 9.5e-15 82.8 58 65.5
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 1.6e-14 82.0 58 63.8
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 2.8e-14 81.3 68 60.3
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 2.8e-14 81.3 58 60.3
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 2.8e-14 81.3 55 65.5
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 3.6e-14 80.9 58 63.8
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 1.1e-13 79.3 55 65.5
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 1.4e-13 79.0 58 63.8
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 1.4e-13 79.0 58 60.3
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 1.8e-13 78.6 58 60.3
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 1.8e-13 78.6 58 63.8
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 4.0e-13 77.4 54 59.3
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 5.2e-13 77.0 58 55.2
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 8.9e-13 76.3 58 60.3
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 8.9e-13 76.3 52 61.5
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 1.2e-12 75.9 51 70.6
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.2e-12 75.9 51 70.6
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.2e-12 75.9 51 70.6
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 1.2e-12 75.9 51 70.6
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 1.2e-12 75.9 58 56.9
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 1.5e-12 75.5 45 71.1
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 2.0e-12 75.1 51 70.6
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 2.0e-12 75.1 51 70.6
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 2.0e-12 75.1 51 70.6
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 2.0e-12 75.1 51 70.6
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 2.0e-12 75.1 51 70.6
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 2.0e-12 75.1 45 71.1
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 2.6e-12 74.7 58 62.1
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 3.4e-12 74.3 51 70.6
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 3.4e-12 74.3 58 53.4
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 5.8e-12 73.6 51 68.6
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 5.8e-12 73.6 51 68.6
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 5.8e-12 73.6 51 68.6
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 9.8e-12 72.8 58 58.6
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 9.8e-12 72.8 58 58.6
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 9.8e-12 72.8 58 53.4
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 9.8e-12 72.8 45 68.9
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 1.3e-11 72.4 50 66.0
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 1.3e-11 72.4 49 67.3
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 2.2e-11 71.6 51 66.7
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 2.2e-11 71.6 45 68.9
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 2.2e-11 71.6 45 62.2
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 2.2e-11 71.6 45 66.7
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 4.9e-11 70.5 45 64.4
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 8.3e-11 69.7 45 68.9
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 1.9e-10 68.6 45 68.9
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 1.9e-10 68.6 45 68.9
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 1.9e-10 68.6 50 60.0
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 3.2e-10 67.8 45 66.7
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 3.2e-10 67.8 58 51.7
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 2.1e-09 65.1 45 66.7
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 4.6e-09 63.9 45 62.2
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 4.6e-09 63.9 46 63.0
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 1.3e-08 62.4 45 62.2
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.3e-08 61.6 45 55.6
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.3e-08 61.6 45 57.8
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 2.3e-08 61.6 45 57.8
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 3.9e-08 60.8 45 53.3
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 5.1e-08 60.5 50 52.0
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 5.1e-08 60.5 45 55.6
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 1.9e-07 58.5 53 50.9
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 2.5e-07 58.2 45 53.3
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 4.3e-07 57.4 56 50.0


User provided reference genes

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