Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 1.0e-164 583.6 342 100.0
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 8.8e-84 314.7 354 54.5
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 9.7e-75 284.6 382 55.2
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 9.4e-70 268.1 392 46.2
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 8.0e-69 265.0 412 46.4
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 6.7e-68 261.9 400 48.2
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 7.5e-67 258.5 423 47.8
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 6.3e-66 255.4 352 48.9
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 6.3e-66 255.4 424 46.5
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 8.2e-66 255.0 425 44.7
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 8.2e-66 255.0 419 49.9
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 7.0e-65 251.9 421 46.1
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 2.2e-63 246.9 410 48.3
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 2.9e-63 246.5 405 44.9
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 8.5e-63 245.0 434 47.9
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 4.2e-62 242.7 410 46.6
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 2.1e-61 240.4 410 43.7
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 6.1e-61 238.8 440 45.0
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 5.2e-60 235.7 420 44.3
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 5.2e-60 235.7 416 42.8
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 1.2e-59 234.6 405 43.0
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 3.4e-59 233.0 421 46.6
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 1.7e-58 230.7 419 46.3
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.1e-57 228.0 381 43.8
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.4e-57 227.6 381 43.8
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 1.4e-57 227.6 356 43.5
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 1.8e-57 227.3 416 41.8
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 3.1e-57 226.5 422 44.5
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 7.0e-57 225.3 414 51.4
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 7.0e-57 225.3 409 46.9
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 3.5e-56 223.0 381 44.6
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 4.5e-56 222.6 423 44.9
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 7.7e-56 221.9 420 44.8
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.7e-55 220.7 423 44.7
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 2.3e-55 220.3 376 47.1
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 8.6e-55 218.4 403 42.2
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.1e-54 218.0 425 43.3
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 1.9e-54 217.2 422 43.8
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 5.5e-54 215.7 463 40.2
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 1.6e-53 214.2 438 45.0
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 3.6e-53 213.0 394 41.1
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 6.8e-52 208.8 401 40.9
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 2.6e-51 206.8 347 43.2
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 7.5e-51 205.3 409 41.6
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 1.3e-50 204.5 393 42.2
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 4.9e-50 202.6 426 37.3
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 2.4e-49 200.3 383 41.5
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 4.5e-48 196.1 401 40.6
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 5.9e-48 195.7 377 42.7
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 1.1e-46 191.4 358 39.9
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 1.9e-46 190.7 307 42.7
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 1.2e-45 188.0 369 39.0
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 2.1e-45 187.2 436 36.5
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 2.8e-45 186.8 416 38.5
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 6.8e-44 182.2 404 40.6
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 2.0e-43 180.6 389 38.8
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 2.6e-43 180.3 360 50.3
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 4.4e-43 179.5 344 39.2
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 7.5e-43 178.7 386 36.5
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 9.8e-43 178.3 388 42.5
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 2.9e-42 176.8 301 41.9
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 3.7e-42 176.4 368 38.9
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 1.9e-41 174.1 363 42.4
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 2.4e-41 173.7 458 36.7
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 3.2e-41 173.3 359 39.6
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 2.0e-40 170.6 377 35.5
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 5.0e-39 166.0 359 45.4
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 6.6e-39 165.6 471 37.2
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 8.6e-39 165.2 341 37.8
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 1.5e-38 164.5 420 37.9
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 1.5e-38 164.5 412 36.4
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 1.9e-38 164.1 385 38.7
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 2.5e-38 163.7 364 42.0
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 2.3e-36 157.1 329 39.2
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 4.0e-36 156.4 283 41.3
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 6.8e-36 155.6 371 38.0
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 2.0e-35 154.1 190 51.1
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 4.4e-35 152.9 338 36.7
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 4.4e-35 152.9 387 34.6
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 5.8e-35 152.5 376 33.0
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 2.2e-34 150.6 322 40.1
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 2.9e-34 150.2 297 41.4
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 8.3e-34 148.7 398 35.7
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 8.6e-31 138.7 336 43.8
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 1.1e-30 138.3 359 33.1
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 3.3e-30 136.7 194 44.8
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 3.3e-30 136.7 328 32.9
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 5.6e-30 136.0 365 32.6
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 2.1e-29 134.0 383 37.3
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 4.7e-29 132.9 349 37.8
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 3.1e-28 130.2 163 51.5
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 5.2e-28 129.4 353 34.0
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 2.9e-26 123.6 116 56.0
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.2e-24 118.2 274 35.4
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 3.5e-24 116.7 253 35.6
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 1.3e-23 114.8 253 35.2
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 1.7e-23 114.4 173 42.8
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 1.7e-23 114.4 351 39.0
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 1.7e-23 114.4 344 29.7
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 2.3e-23 114.0 280 36.4
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 2.3e-23 114.0 280 36.4
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 2.3e-23 114.0 329 35.0
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 3.9e-23 113.2 256 35.9
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 5.1e-23 112.8 434 32.7
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 6.6e-23 112.5 277 39.7
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 6.6e-23 112.5 277 39.7
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 8.6e-23 112.1 277 39.7
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 1.5e-22 111.3 279 38.4
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 2.1e-21 107.5 278 38.5
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 2.1e-21 107.5 351 36.5
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 1.4e-20 104.8 334 31.4
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 1.4e-20 104.8 334 31.4
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 1.8e-20 104.4 137 55.5
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 8.9e-20 102.1 272 40.8
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 8.9e-20 102.1 272 40.8
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 1.2e-19 101.7 302 38.7
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 2.0e-19 100.9 325 38.2
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 3.4e-19 100.1 330 37.6
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 5.8e-19 99.4 302 38.4
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 1.3e-18 98.2 280 36.8
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 1.9e-17 94.4 327 33.3
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 1.9e-17 94.4 331 35.6
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 2.4e-17 94.0 114 48.2
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 4.2e-17 93.2 349 34.4
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 5.4e-17 92.8 127 52.8
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 2.7e-16 90.5 272 33.8
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 7.8e-16 89.0 287 32.8
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 2.3e-15 87.4 325 34.2
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 6.6e-15 85.9 246 33.7
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.1e-13 80.9 268 28.0
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 4.7e-13 79.7 314 31.5
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 1.8e-12 77.8 259 33.2
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 1.2e-11 75.1 46 87.0
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 7.6e-11 72.4 293 27.6
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 1.3e-10 71.6 351 27.6
unitig_0.g2816 Utricularia gibba HOM05D005213 ORTHO05D006229 2.4e-09 67.4 305 30.8
Migut.E01467 Erythranthe guttata HOM05D005213 ORTHO05D006229 1.2e-08 65.1 360 26.9
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 3.5e-08 63.5 46 76.1
CsaV3_4G036220 Cucumis sativus L. HOM05D005213 ORTHO05D006229 2.3e-07 60.8 299 27.4
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.3e-07 60.8 355 24.5
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 3.9e-07 60.1 45 71.1
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 6.6e-07 59.3 312 28.5
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 6.6e-07 59.3 310 28.7
MELO3C016931.2 Cucumis melo HOM05D005213 ORTHO05D006229 8.7e-07 58.9 312 29.2
HPP92_004172 Vanilla planifolia HOM05D001722 ORTHO05D001910 8.7e-07 58.9 227 25.6
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 3.3e-06 57.0 44 70.5


User provided reference genes

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