Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0227751 Helianthus annuus HOM05D006677 ORTHO05D008348 0.0e+00 1494.6 783 100.0
HanXRQChr16g0501081 Helianthus annuus HOM05D006677 ORTHO05D008348 0.0e+00 1153.7 794 73.9
Lsat_1_v5_gn_6_18041 Lactuca sativa HOM05D006677 ORTHO05D008348 8.0e-311 1070.1 789 70.5
ECA233G6125 Erigeron canadensis HOM05D006677 ORTHO05D008348 4.3e-296 1021.1 733 70.1
Lj2C223G6 Lonicera japonica HOM05D006677 ORTHO05D008348 7.5e-248 860.9 799 57.2
Sopen08g026930 Solanum pennellii HOM05D006677 ORTHO05D008348 1.1e-243 847.0 795 56.7
Solyc08g078440.3 Solanum lycopersicum HOM05D006677 ORTHO05D008348 2.8e-242 842.4 795 56.7
Nitab4.5_0001381g0100 Nicotiana tabacum HOM05D006677 ORTHO05D008348 6.2e-242 841.3 792 56.1
Peaxi162Scf00209g00130 Petunia axillaris HOM05D006677 ORTHO05D008348 8.9e-241 837.4 795 56.1
CSS0025591 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 2.6e-240 835.9 793 56.2
Hma1.2p1_0316F.1_g122840 Hydrangea macrophylla HOM05D006677 ORTHO05D008348 7.1e-238 827.8 800 56.2
CAN.G1178.20 Capsicum annuum HOM05D006677 ORTHO05D008348 2.1e-237 826.2 796 54.6
Rhsim07G0111300 Rhododendron simsii HOM05D006677 ORTHO05D008348 2.5e-235 819.3 798 54.6
vmacro14066 Vaccinium macrocarpon HOM05D006677 ORTHO05D008348 2.5e-235 819.3 794 54.7
MSTRG.12123 Avicennia marina HOM05D006677 ORTHO05D008348 1.5e-232 810.1 790 54.2
Rhsim07G0110800 Rhododendron simsii HOM05D006677 ORTHO05D008348 9.9e-232 807.4 819 53.4
CSS0006614 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 1.7e-231 806.6 793 55.0
COL.COLO4_37128 Corchorus olitorius HOM05D006677 ORTHO05D008348 4.1e-230 802.0 804 53.5
Thecc.03G248200 Theobroma cacao HOM05D006677 ORTHO05D008348 1.2e-229 800.4 802 53.5
Cc08_g12180 Coffea canephora HOM05D006677 ORTHO05D008348 2.1e-229 799.7 797 52.8
CANSAT21G0792 Cannabis sativa HOM05D006677 ORTHO05D008348 1.7e-228 796.6 805 52.2
Migut.A01134 Erythranthe guttata HOM05D006677 ORTHO05D008348 1.7e-228 796.6 799 53.6
TAR374G0600 Trochodendron aralioides HOM05D006677 ORTHO05D008348 2.3e-228 796.2 809 53.6
Nitab4.5_0002289g0120 Nicotiana tabacum HOM05D006677 ORTHO05D008348 1.9e-227 793.1 792 53.8
SGA_v2.0_scaffold104G30177 Striga asiatica HOM05D006677 ORTHO05D008348 3.3e-227 792.3 812 52.1
Nn6g33880 Nelumbo nucifera HOM05D006677 ORTHO05D008348 9.6e-227 790.8 809 51.5
DCAR_004989 Daucus carota HOM05D006677 ORTHO05D008348 5.2e-225 785.0 795 53.1
Prupe.5G065400 Prunus persica HOM05D006677 ORTHO05D008348 7.6e-224 781.2 805 53.0
Duzib068G0477 Durio zibethinus HOM05D006677 ORTHO05D008348 1.7e-223 780.0 806 51.4
Dinv21656 Davidia involucrata HOM05D006677 ORTHO05D008348 2.2e-223 779.6 634 63.2
MD04G1060300 Malus domestica HOM05D006677 ORTHO05D008348 1.9e-222 776.5 807 52.5
Sc22g0000980 Simmondsia chinensis HOM05D006677 ORTHO05D008348 1.9e-222 776.5 798 53.1
PGR031G0681 Punica granatum HOM05D006677 ORTHO05D008348 2.4e-222 776.2 801 51.8
MD06G1053300 Malus domestica HOM05D006677 ORTHO05D008348 2.1e-221 773.1 807 51.8
Gorai.008G233700 Gossypium raimondii HOM05D006677 ORTHO05D008348 3.5e-221 772.3 798 51.3
Hund14577 Selenicereus undatus HOM05D006677 ORTHO05D008348 4.6e-221 771.9 796 51.9
Gohir.D12G218100 Gossypium hirsutum HOM05D006677 ORTHO05D008348 8.7e-220 767.7 798 51.0
Gohir.A12G215500 Gossypium hirsutum HOM05D006677 ORTHO05D008348 1.6e-218 763.5 797 51.3
SalBow6G5281 Salvia bowleyana HOM05D006677 ORTHO05D008348 2.8e-218 762.7 852 49.1
AUR62019973 Chenopodium quinoa HOM05D006677 ORTHO05D008348 1.8e-217 760.0 795 51.1
AUR62007111 Chenopodium quinoa HOM05D006677 ORTHO05D008348 3.1e-217 759.2 795 51.3
FAN04G1892 Fragaria x ananassa HOM05D006677 ORTHO05D008348 5.3e-217 758.4 792 51.9
Atru.chr9.1276 Acer truncatum HOM05D006677 ORTHO05D008348 2.6e-216 756.1 799 52.1
FAN13G0013 Fragaria x ananassa HOM05D006677 ORTHO05D008348 3.4e-216 755.7 790 52.3
TWI60G0317 Tripterygium wilfordii HOM05D006677 ORTHO05D008348 3.4e-216 755.7 802 50.6
FvH4_5g19410 Fragaria vesca HOM05D006677 ORTHO05D008348 5.8e-216 755.0 793 52.1
RcHm_v2.0_Chr7g0203921 Rosa chinensis HOM05D006677 ORTHO05D008348 5.8e-216 755.0 793 51.6
Cfa012688 Carpinus fangiana HOM05D006677 ORTHO05D008348 1.3e-215 753.8 796 51.5
Manes.02G041400 Manihot esculenta HOM05D006677 ORTHO05D008348 6.4e-215 751.5 799 50.3
FAN18G1193 Fragaria x ananassa HOM05D006677 ORTHO05D008348 1.4e-214 750.4 793 51.7
FAN08G3018 Fragaria x ananassa HOM05D006677 ORTHO05D008348 1.2e-213 747.3 793 51.8
CiPaw.12G050300 Carya illinoinensis HOM05D006677 ORTHO05D008348 1.0e-212 744.2 797 52.3
EL10Ac5g12357 Beta vulgaris HOM05D006677 ORTHO05D008348 3.9e-212 742.3 799 50.1
Ciclev10018892m.g Citrus clementina HOM05D006677 ORTHO05D008348 5.6e-211 738.4 810 49.3
Haze_07944 Corylus avellana HOM05D006677 ORTHO05D008348 1.6e-210 736.9 859 48.2
Aqoxy7G00821 Aquilegia oxysepala HOM05D006677 ORTHO05D008348 1.1e-209 734.2 806 49.1
Actinidia26803 Actinidia chinensis HOM05D006677 ORTHO05D008348 2.4e-209 733.0 651 58.1
arahy.Tifrunner.gnm1.ann1.IBE8NF Arachis hypogaea HOM05D006677 ORTHO05D008348 5.3e-209 731.9 808 49.6
THA.LOC104806670 Tarenaya hassleriana HOM05D006677 ORTHO05D008348 5.3e-209 731.9 783 48.8
arahy.Tifrunner.gnm1.ann1.WU4RWF Arachis hypogaea HOM05D006677 ORTHO05D008348 2.0e-208 729.9 807 49.7
Potri.001G155800 Populus trichocarpa HOM05D006677 ORTHO05D008348 7.6e-208 728.0 797 49.9
Ah.12g054330 Amaranthus hybridus HOM05D006677 ORTHO05D008348 2.4e-206 723.0 804 49.1
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 4.2e-206 722.2 791 47.7
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 7.1e-206 721.5 791 47.5
BcaC06g34255 Brassica carinata HOM05D006677 ORTHO05D008348 1.2e-205 720.7 792 47.7
CARHR173970 Cardamine hirsuta HOM05D006677 ORTHO05D008348 3.5e-205 719.2 797 47.1
A06p45110 Brassica napus HOM05D006677 ORTHO05D008348 1.5e-203 713.8 790 47.6
AL8G10640 Arabidopsis lyrata HOM05D006677 ORTHO05D008348 3.7e-202 709.1 796 46.6
Carub.0008s0038 Capsella rubella HOM05D006677 ORTHO05D008348 1.4e-201 707.2 797 46.5
QL12p011426 Quercus lobata HOM05D006677 ORTHO05D008348 1.8e-201 706.8 858 46.7
Duzib205G2017 Durio zibethinus HOM05D006677 ORTHO05D008348 1.2e-200 704.1 809 48.6
AT5G47400 Arabidopsis thaliana HOM05D006677 ORTHO05D008348 1.5e-200 703.7 801 46.3
Thhalv10000783m.g Eutrema salsugineum HOM05D006677 ORTHO05D008348 3.4e-200 702.6 796 46.5
Sp2g12115 Schrenkiella parvula HOM05D006677 ORTHO05D008348 3.4e-200 702.6 798 46.4
Ca_21980_v3 Cicer arietinum L. HOM05D006677 ORTHO05D008348 1.3e-199 700.7 798 48.1
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 2.2e-199 699.9 791 47.0
Oeu017057.2 Olea europaea HOM05D006677 ORTHO05D008348 2.9e-199 699.5 826 50.1
Lj4g0000262 Lotus japonicus HOM05D006677 ORTHO05D008348 5.5e-198 695.3 790 48.9
Manes.01G083200 Manihot esculenta HOM05D006677 ORTHO05D008348 9.6e-195 684.5 804 47.8
Lalb_Chr05g0221161 Lupinus albus HOM05D006677 ORTHO05D008348 2.4e-193 679.9 804 47.1
Glyma.17G143800 Glycine max HOM05D006677 ORTHO05D008348 1.2e-192 677.6 798 47.2
Medtr4g100700 Medicago truncatula HOM05D006677 ORTHO05D008348 5.9e-192 675.2 803 46.9
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 3.0e-188 662.9 754 46.7
CDE11G0086 Ceratophyllum demersum HOM05D006677 ORTHO05D008348 8.2e-186 654.8 784 45.4
VMungo0251G0668 Vigna mungo HOM05D006677 ORTHO05D008348 2.2e-183 646.7 796 46.6
Phvul.003G222500 Phaseolus vulgaris HOM05D006677 ORTHO05D008348 7.2e-182 641.7 797 46.9
Psat4g072920 Pisum sativum HOM05D006677 ORTHO05D008348 9.7e-179 631.3 785 45.1
HPP92_022463 Vanilla planifolia HOM05D006677 ORTHO05D008348 1.5e-176 624.0 810 44.6
BcaC06g31390 Brassica carinata HOM05D006677 ORTHO05D008348 4.7e-165 585.9 665 46.9
BcaC06g31392 Brassica carinata HOM05D006677 ORTHO05D008348 1.0e-164 584.7 780 42.8
Eucgr.D02100 Eucalyptus grandis HOM05D006677 ORTHO05D008348 1.0e-159 568.2 588 54.3
ATR0057G118 Amborella trichopoda HOM05D006677 ORTHO05D008348 2.7e-157 560.1 820 43.0
Sabra01G0125500 Salix brachista HOM05D006677 ORTHO05D008348 8.3e-146 521.9 648 47.7
Glyma.05G062000 Glycine max HOM05D006677 ORTHO05D008348 2.9e-143 513.5 595 48.7
Zm00001eb000330 Zea mays HOM05D006677 ORTHO05D008348 3.0e-140 503.4 794 40.4
unitig_21.g20314 Utricularia gibba HOM05D006677 ORTHO05D008348 9.9e-107 392.1 801 35.5
Actinidia10841 Actinidia chinensis HOM05D006677 ORTHO05D008348 1.4e-100 371.7 795 35.0
Pp3c19_23280 Physcomitrium patens HOM05D006677 ORTHO05D008348 3.1e-100 370.5 863 32.3
AagrBONN_evm.TU.Sc2ySwM_228.2440 Anthoceros agrestis HOM05D006677 ORTHO05D008348 1.8e-76 291.6 841 29.0
TPR.G36090 Trifolium pratense HOM05D006677 ORTHO05D008348 1.4e-71 275.4 421 39.2
GSVIVG01006276001 Vitis vinifera HOM05D006677 ORTHO05D008348 5.1e-71 273.5 262 54.2
DCAR_004979 Daucus carota HOM05D006677 ORTHO05D008348 4.3e-70 270.4 288 50.7
DCAR_004986 Daucus carota HOM05D006677 ORTHO05D008348 1.1e-68 265.8 288 50.0
TPR.G37689 Trifolium pratense HOM05D006677 ORTHO05D008348 1.2e-67 262.3 300 48.0
GSVIVG01006275001 Vitis vinifera HOM05D006677 ORTHO05D000005 6.3e-61 240.0 255 52.2
TAR365G0661 Trochodendron aralioides HOM05D006677 ORTHO05D008348 4.2e-57 227.3 272 47.8
Cpa.g.sc3684.1 Carica papaya HOM05D006677 ORTHO05D008348 1.0e-55 222.6 258 47.7
TAR633G2042 Trochodendron aralioides HOM05D006677 ORTHO05D008348 1.7e-37 162.2 182 52.7
TAR629G1120 Trochodendron aralioides HOM05D006677 ORTHO05D008348 1.3e-34 152.5 160 47.5
Os10g0560500 Oryza sativa ssp. japonica HOM05D006677 ORTHO05D008348 5.5e-33 147.1 273 36.3
DCAR_004983 Daucus carota HOM05D006677 ORTHO05D008348 3.6e-32 144.4 225 41.3
CBR_g16835 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-31 142.1 990 21.8
DCAR_004984 Daucus carota HOM05D006677 ORTHO05D008348 2.0e-30 138.7 87 72.4
CAN.G26.36 Capsicum annuum HOM05D006677 ORTHO05D008348 9.8e-30 136.3 174 43.1
DCAR_004974 Daucus carota HOM05D006677 ORTHO05D008348 2.2e-29 135.2 207 40.1
ECA234G1619 Erigeron canadensis HOM05D000206 ORTHO05D000232 3.7e-13 81.3 49 79.6
Cre06.g278126 Chlamydomonas reinhardtii HOM05D006677 ORTHO05D008348 1.1e-12 79.7 235 28.9
ECA233G4789 Erigeron canadensis HOM05D006677 ORTHO05D008348 1.1e-12 79.7 50 76.0
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 3.0e-10 71.6 45 68.9
DCAR_004972 Daucus carota HOM05D006677 ORTHO05D008348 5.6e-09 67.4 118 39.8
MCO13G224 Micromonas commoda HOM05D006677 ORTHO05D008348 6.8e-07 60.5 223 23.8


User provided reference genes

Program Settings