Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0227441 Helianthus annuus HOM05D004897 ORTHO05D005928 0.0e+00 1079.3 630 100.0
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 2.6e-182 642.9 663 67.7
ECA233G2541 Erigeron canadensis HOM05D004897 ORTHO05D005928 1.4e-156 557.4 665 60.0
CSS0030961 Camellia sinensis var. sinensis HOM05D004897 ORTHO05D005928 2.9e-133 479.9 711 52.6
Lj9C421G3 Lonicera japonica HOM05D004897 ORTHO05D005928 9.7e-129 464.9 691 50.9
Actinidia18901 Actinidia chinensis HOM05D004897 ORTHO05D005928 2.2e-125 453.8 700 51.7
Cfa019677 Carpinus fangiana HOM05D004897 ORTHO05D005928 1.0e-122 444.9 695 48.6
CiPaw.15G140900 Carya illinoinensis HOM05D004897 ORTHO05D005928 5.7e-121 439.1 692 49.3
Actinidia35124 Actinidia chinensis HOM05D004897 ORTHO05D005928 1.8e-119 434.1 716 49.0
TAR622G0961 Trochodendron aralioides HOM05D004897 ORTHO05D005928 4.1e-119 433.0 734 47.1
Duzib084G0246 Durio zibethinus HOM05D004897 ORTHO05D005928 5.9e-118 429.1 704 49.4
QL10p028216 Quercus lobata HOM05D004897 ORTHO05D005928 7.7e-118 428.7 689 49.3
QL10p028331 Quercus lobata HOM05D004897 ORTHO05D005928 2.9e-117 426.8 689 49.3
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 2.9e-117 426.8 721 50.3
Hma1.2p1_0669F.1_g200180 Hydrangea macrophylla HOM05D004897 ORTHO05D005928 6.5e-117 425.6 724 47.4
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 1.9e-116 424.1 693 49.6
Thecc.03G053700 Theobroma cacao HOM05D004897 ORTHO05D005928 9.4e-116 421.8 701 48.9
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 1.2e-115 421.4 709 50.6
Prupe.5G232100 Prunus persica HOM05D004897 ORTHO05D005928 1.2e-115 421.4 697 49.4
Glyma.05G244800 Glycine max HOM05D004897 ORTHO05D005928 6.1e-115 419.1 695 49.6
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 6.1e-115 419.1 714 48.5
Nitab4.5_0006894g0040 Nicotiana tabacum HOM05D004897 ORTHO05D005928 1.4e-114 417.9 739 47.6
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 1.8e-114 417.5 697 47.9
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 1.8e-114 417.5 684 49.3
DCAR_014009 Daucus carota HOM05D004897 ORTHO05D005928 2.6e-113 413.7 700 48.1
Haze_18817 Corylus avellana HOM05D004897 ORTHO05D005928 5.7e-113 412.5 760 44.9
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 5.7e-113 412.5 713 47.5
Nn4g24194 Nelumbo nucifera HOM05D004897 ORTHO05D005928 3.7e-112 409.8 727 45.8
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 4.8e-112 409.5 698 46.4
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 8.2e-112 408.7 714 47.9
Nitab4.5_0001456g0120 Nicotiana tabacum HOM05D004897 ORTHO05D005928 2.4e-111 407.1 733 48.6
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 3.1e-111 406.8 690 48.3
Cc04_g06380 Coffea canephora HOM05D004897 ORTHO05D005928 5.3e-111 406.0 697 49.2
FAN13G1819 Fragaria x ananassa HOM05D004897 ORTHO05D005928 5.3e-111 406.0 695 47.3
FAN04G2242 Fragaria x ananassa HOM05D004897 ORTHO05D005928 9.1e-111 405.2 686 48.4
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 3.5e-110 403.3 667 49.6
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 4.5e-110 402.9 683 48.0
Migut.D01558 Erythranthe guttata HOM05D004897 ORTHO05D005928 5.9e-110 402.5 696 46.7
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 5.9e-110 402.5 700 45.0
PSO017G1741 Papaver somniferum HOM05D004897 ORTHO05D005928 5.9e-110 402.5 675 49.8
Lalb_Chr05g0221751 Lupinus albus HOM05D004897 ORTHO05D005928 1.3e-109 401.4 672 48.1
Psat7g002120 Pisum sativum HOM05D004897 ORTHO05D005928 1.3e-109 401.4 703 47.5
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 2.2e-109 400.6 695 48.9
Phvul.002G329100 Phaseolus vulgaris HOM05D004897 ORTHO05D005928 6.5e-109 399.1 702 47.2
FAN18G0124 Fragaria x ananassa HOM05D004897 ORTHO05D005928 8.5e-109 398.7 693 46.6
Medtr8g107060 Medicago truncatula HOM05D004897 ORTHO05D005928 8.5e-109 398.7 682 45.2
SalBow1G4576 Salvia bowleyana HOM05D004897 ORTHO05D005928 8.5e-109 398.7 700 49.9
Potri.015G039800 Populus trichocarpa HOM05D004897 ORTHO05D005928 1.9e-108 397.5 701 46.2
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 4.2e-108 396.4 669 49.6
VMungo0251G1788 Vigna mungo HOM05D004897 ORTHO05D005928 1.2e-107 394.8 702 46.7
PSO478G0546 Papaver somniferum HOM05D004897 ORTHO05D005928 6.1e-107 392.5 678 49.6
Sabra15G0057300 Salix brachista HOM05D004897 ORTHO05D005928 1.0e-106 391.7 695 46.5
FAN08G3076 Fragaria x ananassa HOM05D004897 ORTHO05D005928 1.8e-106 391.0 686 47.5
arahy.Tifrunner.gnm1.ann1.Y8NJDB Arachis hypogaea HOM05D004897 ORTHO05D005928 1.1e-105 388.3 718 45.7
ClCG06G014390 Citrullus lanatus HOM05D004897 ORTHO05D005928 5.7e-105 386.0 700 44.4
CsaV3_1G004270 Cucumis sativus L. HOM05D004897 ORTHO05D005928 5.7e-105 386.0 692 45.7
TWI81G0456 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 5.7e-105 386.0 720 43.3
Rhsim12G0138900 Rhododendron simsii HOM05D004897 ORTHO05D005928 7.5e-105 385.6 672 47.2
Gohir.A09G175700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 9.7e-105 385.2 702 46.2
arahy.Tifrunner.gnm1.ann1.QTT902 Arachis hypogaea HOM05D004897 ORTHO05D005928 1.7e-104 384.4 717 45.3
COL.COLO4_16135 Corchorus olitorius HOM05D004897 ORTHO05D005928 1.1e-103 381.7 699 47.6
Aqoxy3G00106 Aquilegia oxysepala HOM05D004897 ORTHO05D005928 2.4e-103 380.6 686 45.8
MSTRG.4571 Avicennia marina HOM05D004897 ORTHO05D005928 1.2e-102 378.3 707 46.1
PGR083G0946 Punica granatum HOM05D004897 ORTHO05D005928 1.2e-102 378.3 701 45.9
THA.LOC104812165 Tarenaya hassleriana HOM05D004897 ORTHO05D005928 7.7e-102 375.6 686 45.6
A06p14220 Brassica napus HOM05D004897 ORTHO05D005928 1.3e-101 374.8 694 45.2
BraA06t24553Z Brassica rapa HOM05D004897 ORTHO05D005928 6.5e-101 372.5 692 45.1
TWI60G0918 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 8.5e-101 372.1 711 43.6
SGA_v2.0_scaffold168G38498 Striga asiatica HOM05D004897 ORTHO05D005928 1.1e-100 371.7 710 45.5
BcaB07g31825 Brassica carinata HOM05D004897 ORTHO05D005928 1.5e-100 371.3 691 45.4
Sp1g16170 Schrenkiella parvula HOM05D004897 ORTHO05D005928 4.2e-100 369.8 692 45.7
AL1G30560 Arabidopsis lyrata HOM05D004897 ORTHO05D005928 7.2e-100 369.0 691 44.7
C05p16500 Brassica napus HOM05D004897 ORTHO05D005928 7.2e-100 369.0 688 45.2
Carub.0001s1783 Capsella rubella HOM05D004897 ORTHO05D005928 1.6e-99 367.9 696 45.3
AT1G18190 Arabidopsis thaliana HOM05D004897 ORTHO05D005928 2.3e-98 364.0 694 46.1
Hund02326 Selenicereus undatus HOM05D004897 ORTHO05D005928 2.3e-98 364.0 707 44.6
BolC5t30347H Brassica oleracea HOM05D004897 ORTHO05D005928 4.0e-98 363.2 695 44.6
Ca_17200_v3 Cicer arietinum L. HOM05D004897 ORTHO05D005928 5.2e-98 362.8 694 45.2
Manes.14G170400 Manihot esculenta HOM05D004897 ORTHO05D005928 5.2e-98 362.8 707 44.3
Sed0002019 Sechium edule HOM05D004897 ORTHO05D005928 7.5e-97 359.0 699 44.2
Thhalv10007004m.g Eutrema salsugineum HOM05D004897 ORTHO05D005928 2.8e-96 357.1 706 44.9
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 2.4e-95 354.0 667 44.8
Dinv18253 Davidia involucrata HOM05D004897 ORTHO05D005928 5.4e-95 352.8 377 58.4
vmacro16414 Vaccinium macrocarpon HOM05D004897 ORTHO05D005928 7.0e-95 352.4 853 40.0
AUR62042935 Chenopodium quinoa HOM05D004897 ORTHO05D005928 8.5e-93 345.5 665 41.4
Aa31LG7G2880 Aethionema arabicum HOM05D004897 ORTHO05D005928 9.5e-92 342.0 717 43.1
Atru.chr9.1748 Acer truncatum HOM05D004897 ORTHO05D005928 3.6e-91 340.1 691 44.7
TPR.G1406 Trifolium pratense HOM05D004897 ORTHO05D005928 2.3e-90 337.4 641 46.6
MELO3C017351.2 Cucumis melo HOM05D004897 ORTHO05D005928 3.0e-90 337.0 697 42.8
Dinv10174 Davidia involucrata HOM05D004897 ORTHO05D005928 2.6e-89 334.0 590 48.6
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 9.8e-89 332.0 686 41.5
Sc10g0009320 Simmondsia chinensis HOM05D004897 ORTHO05D005928 1.7e-88 331.3 683 45.1
BcaC05g25714 Brassica carinata HOM05D004897 ORTHO05D005928 1.7e-85 321.2 354 55.6
Ah.11g045250 Amaranthus hybridus HOM05D004897 ORTHO05D005928 5.0e-85 319.7 690 43.9
Peaxi162Scf00683g00441 Petunia axillaris HOM05D004897 ORTHO05D005928 1.8e-82 311.2 296 63.2
Sed0018128 Sechium edule HOM05D004897 ORTHO05D005928 2.3e-82 310.8 350 54.9
BcaC07g38902 Brassica carinata HOM05D004897 ORTHO05D005928 2.4e-79 300.8 684 37.1
FvH4_5g17221 Fragaria vesca HOM05D004897 ORTHO05D005928 7.0e-79 299.3 568 45.6
Cpa.g.sc3.408 Carica papaya HOM05D004897 ORTHO05D005928 5.0e-77 293.1 589 45.8
HPP92_013368 Vanilla planifolia HOM05D004897 ORTHO05D005928 2.1e-75 287.7 665 40.2
BraA08t34983Z Brassica rapa HOM05D004897 ORTHO05D005928 6.8e-74 282.7 332 54.5
C08p18450 Brassica napus HOM05D004897 ORTHO05D005928 5.8e-73 279.6 335 52.5
Os04g0652500 Oryza sativa ssp. japonica HOM05D004897 ORTHO05D005928 6.6e-61 239.6 310 47.1
GSVIVG01008418001 Vitis vinifera HOM05D004897 ORTHO05D005928 1.6e-59 235.0 471 45.9
Zm00001eb068130 Zea mays HOM05D004897 ORTHO05D005928 6.4e-56 223.0 295 47.1
BcaNung05436 Brassica carinata HOM05D004897 ORTHO05D005928 1.2e-54 218.8 304 49.0
CARHR018760 Cardamine hirsuta HOM05D004897 ORTHO05D005928 2.6e-49 201.1 252 50.8
BolC8t49476H Brassica oleracea HOM05D004897 ORTHO05D005928 3.2e-47 194.1 298 45.3
GSVIVG01008417001 Vitis vinifera HOM05D004897 ORTHO05D005928 3.5e-46 190.7 236 52.1
ATR1102G065 Amborella trichopoda HOM05D004897 ORTHO05D005928 3.9e-45 187.2 511 41.7
CARHR018770 Cardamine hirsuta HOM05D004897 ORTHO05D005928 3.1e-42 177.6 442 41.9
Pp3c2_5550 Physcomitrium patens HOM05D004897 ORTHO05D005928 8.7e-37 159.5 344 38.1
ATR1102G018 Amborella trichopoda HOM05D004897 ORTHO05D005928 1.9e-36 158.3 223 47.1
Mapoly0056s0112 Marchantia polymorpha HOM05D004897 ORTHO05D005928 8.1e-35 152.9 352 35.2
BcaB03g12969 Brassica carinata HOM05D004897 ORTHO05D005928 1.8e-34 151.8 283 42.8
AagrBONN_evm.TU.Sc2ySwM_344.4779 Anthoceros agrestis HOM05D004897 ORTHO05D005928 1.2e-33 149.1 757 29.3
Gohir.D09G170550 Gossypium hirsutum HOM05D004897 ORTHO05D005928 1.3e-32 145.6 169 53.8
Gorai.006G192100 Gossypium raimondii HOM05D004897 ORTHO05D005928 6.4e-32 143.3 166 53.0
AUR62041008 Chenopodium quinoa HOM05D004897 ORTHO05D005928 1.9e-28 131.7 387 38.8
unitig_0.g806 Utricularia gibba HOM05D004897 ORTHO05D005928 2.4e-26 124.8 192 45.3
Zm00001eb072950 Zea mays HOM05D004897 ORTHO05D005928 2.4e-26 124.8 145 49.7
Oeu041185.1 Olea europaea HOM05D004897 ORTHO05D005928 1.2e-25 122.5 100 71.0
SEGI_33031 Sequoiadendron giganteum HOM05D004897 ORTHO05D005928 1.2e-25 122.5 231 38.1
Actinidia04720 Actinidia chinensis HOM05D004897 ORTHO05D005928 3.2e-23 114.4 400 33.0
Zm00001eb168530 Zea mays HOM05D004897 ORTHO05D005928 1.5e-20 105.5 128 44.5
Zm00001eb243110 Zea mays HOM05D004897 ORTHO05D005928 4.3e-20 104.0 127 44.1
Zm00001eb381910 Zea mays HOM05D004897 ORTHO05D005928 4.3e-20 104.0 127 44.1
Zm00001eb382530 Zea mays HOM05D004897 ORTHO05D005928 4.3e-20 104.0 127 44.1
CDE05G0958 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 1.3e-19 102.4 84 64.3
Oeu041181.1 Olea europaea HOM05D004897 ORTHO05D005928 1.3e-19 102.4 297 34.7
Zm00001eb280830 Zea mays HOM05D004897 ORTHO05D005928 1.3e-16 92.4 119 42.0
Zm00001eb382330 Zea mays HOM05D004897 ORTHO05D005928 1.1e-15 89.4 82 54.9
SMO269G0021 Selaginella moellendorffii HOM05D004897 ORTHO05D005928 1.8e-13 82.0 544 25.9
BolC8t49477H Brassica oleracea HOM05D004897 ORTHO05D005928 9.7e-12 76.3 195 35.9
Peaxi162Scf00683g00456 Petunia axillaris HOM05D004897 ORTHO05D005928 2.4e-10 71.6 131 45.0
BcaC05g25715 Brassica carinata HOM05D004897 ORTHO05D005928 1.2e-09 69.3 262 30.2
TWI36G1671 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 1.5e-09 68.9 47 74.5
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 3.8e-08 64.3 327 25.1
Actinidia04719 Actinidia chinensis HOM05D004897 ORTHO05D005928 5.0e-08 63.9 43 72.1
arahy.Tifrunner.gnm1.ann1.U711QF Arachis hypogaea HOM05D004897 ORTHO05D005928 6.5e-08 63.5 144 38.2
SEGI_22595 Sequoiadendron giganteum HOM05D004897 ORTHO05D005928 1.1e-07 62.8 147 38.8
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.9e-07 62.0 338 24.9
Prupe.5G050900 Prunus persica HOM05D004897 ORTHO05D005928 1.2e-06 59.3 42 71.4
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 3.6e-06 57.8 336 25.3
Prupe.7G033500 Prunus persica HOM05D004897 ORTHO05D005928 6.1e-06 57.0 90 45.6
MBI14_g27819_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D022889 7.9e-06 56.6 73 52.1
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 7.9e-06 56.6 305 25.6


User provided reference genes

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