Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 2.2e-70 269.2 179 100.0
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 5.3e-56 221.5 180 80.6
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 9.7e-50 200.7 166 84.3
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 2.4e-48 196.1 173 75.1
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 7.7e-47 191.0 178 83.1
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 6.7e-43 177.9 169 78.1
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 4.8e-41 171.8 167 79.6
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 4.8e-41 171.8 167 67.7
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.8e-41 171.8 167 67.7
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.8e-41 171.8 167 67.7
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 4.8e-41 171.8 164 70.7
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 8.2e-41 171.0 163 80.4
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 3.1e-40 169.1 166 68.7
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 4.1e-40 168.7 155 74.2
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 9.1e-40 167.5 173 64.7
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.5e-39 166.8 173 65.9
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 2.0e-39 166.4 166 78.3
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.6e-39 166.0 168 78.0
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 3.4e-39 165.6 173 76.9
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 3.4e-39 165.6 177 65.5
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 4.5e-39 165.2 168 79.2
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 4.5e-39 165.2 164 63.4
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 5.9e-39 164.9 168 77.4
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.0e-38 164.1 168 77.4
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 1.0e-38 164.1 168 77.4
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 1.0e-38 164.1 174 54.6
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.7e-38 163.3 165 64.8
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 1.7e-38 163.3 166 78.3
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 1.7e-38 163.3 164 78.0
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.2e-38 162.9 172 76.2
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 3.8e-38 162.2 165 64.8
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 1.4e-37 160.2 163 79.1
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 1.9e-37 159.8 170 64.7
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 1.9e-37 159.8 151 72.8
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 5.5e-37 158.3 163 66.3
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 7.2e-37 157.9 170 75.9
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 7.2e-37 157.9 168 63.7
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 9.4e-37 157.5 144 67.4
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 9.4e-37 157.5 164 62.8
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 1.2e-36 157.1 171 52.6
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.1e-36 156.4 167 76.0
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 2.1e-36 156.4 172 64.0
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 2.7e-36 156.0 166 65.1
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 3.6e-36 155.6 160 67.5
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 4.7e-36 155.2 172 73.8
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 4.7e-36 155.2 166 65.7
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 6.1e-36 154.8 163 66.9
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 6.1e-36 154.8 152 75.7
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.0e-35 154.1 160 65.0
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 1.0e-35 154.1 171 76.0
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.8e-35 153.3 147 67.3
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 3.0e-35 152.5 177 60.5
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.0e-35 152.5 167 74.9
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 3.0e-35 152.5 169 63.9
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 3.9e-35 152.1 165 75.8
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 5.1e-35 151.8 161 70.8
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 5.1e-35 151.8 165 73.3
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 6.7e-35 151.4 165 72.7
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 8.8e-35 151.0 168 75.6
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 8.8e-35 151.0 164 62.8
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.1e-34 150.6 152 67.1
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 2.0e-34 149.8 166 62.0
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 2.0e-34 149.8 162 76.5
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.6e-34 149.4 173 72.3
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 4.4e-34 148.7 163 63.2
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 4.4e-34 148.7 166 74.7
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 4.4e-34 148.7 168 75.0
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 4.4e-34 148.7 169 60.4
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 5.7e-34 148.3 152 64.5
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 7.4e-34 147.9 166 75.9
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 7.4e-34 147.9 166 62.0
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 9.7e-34 147.5 172 71.5
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 9.7e-34 147.5 173 59.5
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.7e-33 146.7 169 74.0
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.7e-33 146.7 169 74.0
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 2.2e-33 146.4 163 76.7
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 2.8e-33 146.0 171 73.1
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 2.8e-33 146.0 176 61.9
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 3.7e-33 145.6 149 67.8
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 8.2e-33 144.4 147 79.6
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 8.2e-33 144.4 145 70.3
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 1.1e-32 144.1 231 40.3
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 1.1e-32 144.1 167 59.9
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 1.4e-32 143.7 174 70.7
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 1.8e-32 143.3 162 73.5
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.4e-32 142.9 167 50.3
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.4e-32 142.9 163 61.3
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 3.1e-32 142.5 179 48.6
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 3.1e-32 142.5 162 64.8
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 4.1e-32 142.1 164 49.4
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 4.1e-32 142.1 161 75.8
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 9.1e-32 141.0 164 50.0
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 9.1e-32 141.0 158 76.6
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.2e-31 140.6 162 71.6
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 1.2e-31 140.6 165 61.8
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 1.5e-31 140.2 171 48.5
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.5e-31 140.2 172 70.3
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 2.0e-31 139.8 166 72.9
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 2.0e-31 139.8 166 72.9
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 2.6e-31 139.4 147 63.3
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 5.9e-31 138.3 163 60.1
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 1.3e-30 137.1 176 68.2
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.2e-30 136.3 162 60.5
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 2.2e-30 136.3 162 60.5
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 3.8e-30 135.6 164 72.0
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.1e-29 134.0 162 59.9
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.5e-29 133.7 162 70.4
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 5.5e-29 131.7 160 48.1
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 5.5e-29 131.7 174 58.0
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.2e-28 130.6 152 75.7
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.6e-28 130.2 160 66.2
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.1e-28 129.8 162 55.6
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 3.6e-28 129.0 161 57.8
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 3.6e-28 129.0 161 57.8
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 8.0e-28 127.9 167 52.1
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 8.0e-28 127.9 151 72.2
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 8.0e-28 127.9 151 72.2
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 1.4e-27 127.1 152 57.9
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 1.4e-27 127.1 152 57.9
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.4e-27 127.1 152 57.9
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 1.8e-27 126.7 162 69.8
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 2.3e-27 126.3 162 69.1
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 2.3e-27 126.3 175 67.4
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 3.0e-27 125.9 175 66.9
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 3.0e-27 125.9 175 66.9
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 3.0e-27 125.9 167 54.5
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 5.2e-27 125.2 174 67.2
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 8.8e-27 124.4 174 67.2
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 1.5e-26 123.6 155 70.3
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 7.4e-26 121.3 162 53.7
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 9.7e-26 120.9 148 56.8
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.3e-25 120.6 174 53.4
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 1.3e-25 120.6 127 69.3
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 2.2e-25 119.8 128 68.8
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 3.7e-25 119.0 162 53.1
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 3.7e-25 119.0 176 64.8
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 1.2e-23 114.0 143 72.7
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 2.6e-23 112.8 163 48.5
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 2.6e-23 112.8 111 72.1
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 4.2e-21 105.5 132 59.8
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.0e-19 100.9 86 59.3
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 5.2e-19 98.6 99 75.8
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 9.8e-18 94.4 120 64.2
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 2.2e-17 93.2 147 52.4
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 1.1e-16 90.9 108 40.7
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.9e-14 82.8 84 73.8
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 3.8e-14 82.4 45 86.7
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 2.5e-13 79.7 85 50.6
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 5.5e-13 78.6 93 69.9
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 2.8e-09 66.2 47 66.0


User provided reference genes

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