Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 1.3e-163 579.7 304 100.0
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 1.3e-163 579.7 304 100.0
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.7e-83 313.5 219 78.1
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 1.2e-73 280.8 249 65.5
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 1.6e-65 253.8 260 61.9
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 6.4e-62 241.9 246 59.3
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.4e-61 240.7 254 55.5
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 1.4e-61 240.7 255 58.0
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.2e-60 237.7 254 55.5
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.1e-58 231.1 251 53.4
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 1.9e-58 230.3 254 53.9
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 4.3e-58 229.2 254 55.5
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 5.6e-58 228.8 251 54.2
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 5.6e-58 228.8 250 51.6
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 7.3e-58 228.4 257 54.5
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 1.3e-57 227.6 252 56.3
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 3.6e-57 226.1 257 53.3
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 1.4e-56 224.2 240 56.7
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 6.9e-56 221.9 239 56.5
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 9.0e-56 221.5 241 56.0
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 9.0e-56 221.5 251 53.8
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.5e-55 220.7 242 55.8
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 2.0e-55 220.3 258 54.3
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 3.4e-55 219.5 247 54.7
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 3.4e-55 219.5 257 51.0
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 3.4e-55 219.5 252 52.4
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 5.8e-55 218.8 250 53.6
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 7.6e-55 218.4 254 49.6
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 1.7e-54 217.2 250 52.4
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 2.2e-54 216.9 250 51.6
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 4.9e-54 215.7 272 48.9
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 6.4e-54 215.3 253 55.3
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 8.4e-54 214.9 252 50.4
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 3.2e-53 213.0 243 53.1
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 3.2e-53 213.0 250 51.2
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 4.2e-53 212.6 240 55.4
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 5.4e-53 212.2 253 48.6
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 9.3e-53 211.5 246 54.5
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 1.6e-52 210.7 247 53.4
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 2.1e-52 210.3 253 49.8
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 2.1e-52 210.3 247 51.4
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 2.7e-52 209.9 246 52.0
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 3.5e-52 209.5 241 51.0
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 3.5e-52 209.5 188 63.3
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 6.0e-52 208.8 276 50.7
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 1.3e-51 207.6 269 46.8
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 1.3e-51 207.6 237 52.7
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.8e-51 207.2 263 51.3
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 3.0e-51 206.5 263 50.6
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 3.0e-51 206.5 254 47.2
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 6.7e-51 205.3 256 52.3
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 8.7e-51 204.9 259 51.0
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 1.1e-50 204.5 255 47.5
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.1e-50 204.5 255 47.1
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.5e-50 204.1 253 52.6
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.3e-50 203.0 255 47.8
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 3.3e-50 203.0 172 64.5
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.3e-50 202.6 261 50.6
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 5.6e-50 202.2 212 56.1
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 7.4e-50 201.8 248 54.0
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 7.4e-50 201.8 255 47.5
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 7.4e-50 201.8 252 46.0
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 9.6e-50 201.4 263 50.6
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.1e-49 200.3 260 50.0
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 3.7e-49 199.5 261 52.5
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 4.8e-49 199.1 259 47.1
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 4.8e-49 199.1 245 50.2
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 4.8e-49 199.1 248 47.6
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 6.2e-49 198.7 260 50.0
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.4e-48 197.6 272 49.3
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 1.8e-48 197.2 250 49.2
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 1.8e-48 197.2 312 43.9
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 1.8e-48 197.2 250 51.2
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 2.4e-48 196.8 253 47.4
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 3.1e-48 196.4 258 48.4
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 4.0e-48 196.1 252 51.6
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 1.2e-47 194.5 264 48.1
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 2.6e-47 193.4 245 50.2
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 2.6e-47 193.4 249 46.6
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 2.6e-47 193.4 254 50.4
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 3.4e-47 193.0 181 56.4
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 5.8e-47 192.2 280 47.1
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 7.6e-47 191.8 259 48.6
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 7.6e-47 191.8 262 47.7
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.0e-46 191.4 262 49.2
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 1.3e-46 191.0 253 49.4
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 1.7e-46 190.7 237 53.2
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 2.2e-46 190.3 255 46.3
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 4.9e-46 189.1 250 48.0
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 4.9e-46 189.1 259 48.6
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 8.4e-46 188.3 253 49.0
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 8.4e-46 188.3 255 45.1
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.1e-45 188.0 223 48.4
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 2.5e-45 186.8 250 44.0
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 4.2e-45 186.0 258 47.3
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 7.1e-45 185.3 228 46.5
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 9.3e-45 184.9 248 52.0
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 1.6e-44 184.1 243 48.6
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 2.7e-44 183.3 247 50.2
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 2.7e-44 183.3 233 46.8
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 3.5e-44 183.0 249 46.6
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 6.0e-44 182.2 258 49.2
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 6.0e-44 182.2 259 48.6
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 3.9e-43 179.5 251 48.2
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 5.1e-43 179.1 254 44.9
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.7e-43 178.7 260 44.6
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 6.7e-43 178.7 234 49.6
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 8.7e-43 178.3 239 49.0
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 5.7e-42 175.6 162 55.6
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 1.3e-41 174.5 261 40.6
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 6.2e-41 172.2 247 47.0
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 6.2e-41 172.2 255 46.7
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.1e-40 171.4 254 46.9
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 2.4e-40 170.2 253 41.5
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 5.3e-40 169.1 367 37.9
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 6.9e-40 168.7 224 45.1
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.2e-39 167.9 155 54.2
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 5.8e-39 165.6 256 44.9
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 1.3e-38 164.5 264 46.2
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 5.5e-37 159.1 252 43.3
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 2.3e-35 153.7 151 56.3
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 8.7e-35 151.8 146 59.6
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 1.9e-34 150.6 269 41.3
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 7.4e-34 148.7 168 50.0
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.5e-31 141.0 365 35.3
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 2.2e-25 120.6 188 37.8
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.4e-24 117.9 122 62.3
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 6.9e-24 115.5 124 50.0
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.6e-23 113.6 237 38.0
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 1.7e-22 110.9 216 35.6
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 2.2e-22 110.5 242 37.2
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 1.4e-21 107.8 131 45.8
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 9.4e-21 105.1 158 42.4
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 9.4e-21 105.1 73 68.5
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 1.6e-20 104.4 140 45.0
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 4.7e-20 102.8 125 52.0
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 3.7e-17 93.2 141 41.8
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 8.2e-17 92.0 92 52.2
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 8.2e-17 92.0 144 38.2
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 1.4e-16 91.3 229 31.9
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 3.1e-16 90.1 125 46.4
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 4.5e-15 86.3 213 39.0
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 3.2e-13 80.1 115 51.3
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 2.2e-09 67.4 46 63.0
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 2.2e-09 67.4 46 63.0
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 3.7e-09 66.6 212 28.8
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.8e-08 64.3 53 60.4


User provided reference genes

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