Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 1.1e-99 366.7 190 100.0
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 9.2e-75 283.9 185 77.8
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 2.7e-74 282.3 190 75.8
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 1.4e-59 233.4 175 70.3
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 5.4e-59 231.5 179 67.6
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 2.1e-58 229.6 167 70.7
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 4.6e-58 228.4 179 66.5
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 4.6e-58 228.4 161 71.4
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 7.8e-58 227.6 179 65.9
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 1.0e-57 227.3 190 64.2
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 1.7e-57 226.5 188 64.4
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 1.7e-57 226.5 179 64.8
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 2.3e-57 226.1 179 64.2
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 3.0e-57 225.7 178 64.6
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 3.0e-57 225.7 179 65.4
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 5.1e-57 224.9 178 66.3
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 5.1e-57 224.9 159 69.2
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 8.7e-57 224.2 177 64.4
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 8.7e-57 224.2 176 67.0
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 1.5e-56 223.4 181 64.6
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 2.5e-56 222.6 179 61.5
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 2.5e-56 222.6 179 64.8
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 9.6e-56 220.7 179 62.6
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 1.3e-55 220.3 178 64.0
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 1.3e-55 220.3 196 61.7
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 1.6e-55 219.9 176 64.8
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 1.6e-55 219.9 179 64.2
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 1.6e-55 219.9 178 62.9
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.6e-55 219.9 179 63.1
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 2.1e-55 219.5 162 68.5
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 2.8e-55 219.2 175 65.7
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 3.6e-55 218.8 171 65.5
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 4.8e-55 218.4 176 64.2
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 8.1e-55 217.6 176 63.1
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 8.1e-55 217.6 179 62.6
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.4e-54 216.9 179 62.6
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.8e-54 216.5 185 63.2
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 3.1e-54 215.7 175 64.0
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 5.3e-54 214.9 175 62.3
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 5.3e-54 214.9 178 61.8
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 5.3e-54 214.9 178 62.4
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 6.9e-54 214.5 175 61.7
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 6.9e-54 214.5 175 64.0
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 1.5e-53 213.4 162 68.5
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 1.5e-53 213.4 208 57.2
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 2.0e-53 213.0 174 64.4
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 2.6e-53 212.6 157 66.9
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 2.6e-53 212.6 157 66.9
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 2.6e-53 212.6 175 62.9
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 2.6e-53 212.6 168 64.9
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 3.4e-53 212.2 179 62.0
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 3.4e-53 212.2 161 66.5
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 3.4e-53 212.2 177 61.0
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 4.4e-53 211.8 175 64.0
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 4.4e-53 211.8 174 63.2
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 5.8e-53 211.5 175 62.9
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 5.8e-53 211.5 158 67.7
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 7.6e-53 211.1 157 66.2
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 7.6e-53 211.1 164 67.7
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 9.9e-53 210.7 179 60.3
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 1.7e-52 209.9 178 61.8
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.7e-52 209.9 178 62.9
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 2.2e-52 209.5 157 65.6
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 2.2e-52 209.5 157 65.6
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.2e-52 209.5 156 66.7
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 2.2e-52 209.5 171 64.3
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 2.9e-52 209.1 190 56.3
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 4.9e-52 208.4 175 62.9
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 6.4e-52 208.0 169 63.9
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 8.4e-52 207.6 161 66.5
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 8.4e-52 207.6 179 58.7
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 8.4e-52 207.6 169 65.1
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 8.4e-52 207.6 171 64.3
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.1e-51 207.2 175 63.4
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 2.4e-51 206.1 162 64.8
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 2.4e-51 206.1 179 59.2
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 2.4e-51 206.1 178 58.4
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 2.4e-51 206.1 156 67.3
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.2e-51 205.7 158 64.6
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 4.2e-51 205.3 157 65.0
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 4.2e-51 205.3 176 63.1
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 4.2e-51 205.3 158 65.2
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 4.2e-51 205.3 176 60.8
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 5.4e-51 204.9 163 63.2
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 7.1e-51 204.5 162 64.8
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 9.3e-51 204.1 158 63.9
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 9.3e-51 204.1 158 63.9
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.1e-50 203.0 193 59.1
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 3.5e-50 202.2 178 60.7
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 6.0e-50 201.4 159 65.4
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 6.0e-50 201.4 159 65.4
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 6.0e-50 201.4 178 60.7
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 7.9e-50 201.1 161 58.4
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 1.0e-49 200.7 175 60.0
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 1.0e-49 200.7 175 60.0
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 1.0e-49 200.7 175 60.0
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 1.0e-49 200.7 161 62.7
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.0e-49 200.7 162 60.5
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 1.3e-49 200.3 171 59.1
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 3.9e-49 198.7 160 65.0
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 3.9e-49 198.7 159 66.7
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 3.9e-49 198.7 170 60.0
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 5.1e-49 198.4 173 61.3
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 5.1e-49 198.4 161 60.2
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 6.6e-49 198.0 161 60.2
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 8.7e-49 197.6 156 64.7
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 8.7e-49 197.6 168 60.1
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.1e-48 197.2 162 63.6
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 2.5e-48 196.1 175 57.7
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 4.3e-48 195.3 161 59.6
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 9.6e-48 194.1 158 62.0
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 2.8e-47 192.6 184 54.3
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 3.6e-47 192.2 141 68.1
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 4.8e-47 191.8 160 58.8
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.4e-46 190.3 162 60.5
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.4e-46 190.3 162 60.5
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 1.8e-46 189.9 186 54.8
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.8e-46 189.9 162 59.9
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.8e-46 189.9 163 59.5
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 2.4e-46 189.5 184 56.5
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 2.4e-46 189.5 218 49.5
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 4.0e-46 188.7 208 51.0
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 4.0e-46 188.7 179 57.0
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 9.0e-46 187.6 142 66.9
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 4.5e-45 185.3 172 52.3
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 3.8e-44 182.2 185 54.6
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 8.4e-44 181.0 161 53.4
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 5.5e-43 178.3 142 65.5
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 1.8e-41 173.3 133 63.9
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 2.5e-40 169.5 124 66.9
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 4.3e-40 168.7 123 68.3
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.6e-39 166.8 109 77.1
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 2.1e-39 166.4 124 66.9
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 4.8e-39 165.2 164 50.0
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 6.2e-39 164.9 121 69.4
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 1.8e-38 163.3 120 70.0
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 1.8e-38 163.3 124 62.1
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 4.0e-38 162.2 120 68.3
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 4.0e-38 162.2 141 62.4
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 6.9e-38 161.4 131 63.4
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.0e-36 157.5 135 61.5
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 6.5e-36 154.8 153 51.0
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 8.4e-36 154.5 155 51.0
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 1.4e-35 153.7 123 66.7
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 2.5e-35 152.9 145 58.6
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 4.6e-34 148.7 118 61.0
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 7.9e-34 147.9 158 50.0
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 1.8e-33 146.7 137 56.9
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 5.1e-33 145.2 156 51.3
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 6.7e-33 144.8 120 63.3
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 3.3e-32 142.5 170 44.7
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.3e-32 142.5 149 49.7
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 1.1e-30 137.5 119 59.7
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.0e-28 131.0 148 45.3
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 3.9e-25 119.0 90 70.0
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 5.1e-25 118.6 85 68.2
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.7e-20 103.6 146 43.2
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 2.9e-20 102.8 110 50.9
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.2e-10 70.9 96 38.5
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 3.3e-08 62.8 44 68.2
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 7.4e-08 61.6 44 65.9
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 2.8e-07 59.7 47 63.8
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 3.7e-07 59.3 46 65.2
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 3.7e-07 59.3 46 65.2
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 4.1e-06 55.8 46 60.9


User provided reference genes

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