Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 1.2e-70 269.6 125 100.0
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 1.5e-52 209.5 98 94.9
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 1.2e-51 206.5 96 95.8
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 5.2e-50 201.1 101 90.1
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 1.1e-47 193.4 96 88.5
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 2.9e-45 185.3 102 82.4
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 1.5e-44 183.0 97 85.6
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 1.5e-44 183.0 97 85.6
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 2.5e-44 182.2 97 83.5
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 3.2e-44 181.8 97 82.5
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 3.2e-44 181.8 97 82.5
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 3.2e-44 181.8 97 83.5
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 7.2e-44 180.6 98 84.7
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 1.2e-43 179.9 97 82.5
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 4.7e-43 177.9 102 81.4
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 6.1e-43 177.6 97 80.4
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 6.1e-43 177.6 96 82.3
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 8.0e-43 177.2 95 84.2
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 8.0e-43 177.2 95 84.2
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 1.0e-42 176.8 97 81.4
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 1.0e-42 176.8 98 83.7
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 1.8e-42 176.0 98 82.7
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 1.8e-42 176.0 95 83.2
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.3e-42 175.6 98 82.7
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.3e-42 175.6 98 82.7
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 2.3e-42 175.6 98 82.7
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 4.0e-42 174.9 99 80.8
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 4.0e-42 174.9 98 80.6
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 4.0e-42 174.9 98 82.7
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 5.2e-42 174.5 97 84.5
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 5.2e-42 174.5 97 84.5
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 5.2e-42 174.5 96 79.2
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 5.2e-42 174.5 98 81.6
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 5.2e-42 174.5 98 81.6
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 6.8e-42 174.1 98 81.6
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 6.8e-42 174.1 98 82.7
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 6.8e-42 174.1 102 78.4
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 1.2e-41 173.3 97 83.5
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 1.5e-41 172.9 97 82.5
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 1.5e-41 172.9 96 83.3
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 1.5e-41 172.9 98 82.7
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.6e-41 172.2 98 81.6
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 2.6e-41 172.2 98 81.6
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 2.6e-41 172.2 98 82.7
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 3.4e-41 171.8 98 81.6
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 3.4e-41 171.8 98 81.6
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 4.4e-41 171.4 98 80.6
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 5.7e-41 171.0 95 83.2
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 5.7e-41 171.0 105 80.0
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 5.7e-41 171.0 98 80.6
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 5.7e-41 171.0 97 81.4
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 7.5e-41 170.6 98 82.7
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 7.5e-41 170.6 95 82.1
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 9.8e-41 170.2 97 81.4
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 9.8e-41 170.2 98 80.6
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 9.8e-41 170.2 97 81.4
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 9.8e-41 170.2 83 95.2
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 9.8e-41 170.2 97 77.3
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 1.3e-40 169.9 97 77.3
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 1.7e-40 169.5 97 80.4
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 1.7e-40 169.5 97 81.4
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 1.7e-40 169.5 99 76.8
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 2.2e-40 169.1 98 78.6
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 2.2e-40 169.1 98 79.6
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 3.7e-40 168.3 97 79.4
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 3.7e-40 168.3 97 78.4
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 4.8e-40 167.9 101 75.2
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 6.3e-40 167.5 98 79.6
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 6.3e-40 167.5 97 79.4
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 8.3e-40 167.2 97 78.4
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 8.3e-40 167.2 98 78.6
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 1.1e-39 166.8 98 79.6
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 1.4e-39 166.4 102 74.5
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 1.4e-39 166.4 98 75.5
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 1.8e-39 166.0 98 79.6
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 4.1e-39 164.9 98 76.5
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 4.1e-39 164.9 99 73.7
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 5.4e-39 164.5 96 78.1
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 5.4e-39 164.5 103 70.9
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 5.4e-39 164.5 99 73.7
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 7.0e-39 164.1 96 77.1
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 9.1e-39 163.7 96 79.2
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 7.7e-38 160.6 98 77.6
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 1.7e-37 159.5 98 76.5
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 2.3e-37 159.1 106 67.9
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 2.3e-37 159.1 98 72.4
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 5.0e-37 157.9 104 72.1
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 5.0e-37 157.9 104 72.1
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 5.0e-37 157.9 104 72.1
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 5.0e-37 157.9 104 72.1
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 5.0e-37 157.9 104 72.1
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 5.0e-37 157.9 98 74.5
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 6.5e-37 157.5 112 66.1
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 8.6e-37 157.1 98 73.5
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 8.6e-37 157.1 98 73.5
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 8.6e-37 157.1 98 73.5
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 8.6e-37 157.1 98 74.5
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 1.1e-36 156.8 98 73.5
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 1.1e-36 156.8 98 73.5
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 1.1e-36 156.8 98 73.5
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 1.1e-36 156.8 98 73.5
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 1.1e-36 156.8 98 73.5
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 2.5e-36 155.6 98 70.4
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 2.5e-36 155.6 98 70.4
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 2.5e-36 155.6 98 72.4
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 3.3e-36 155.2 98 72.4
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 3.3e-36 155.2 98 72.4
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 3.3e-36 155.2 98 72.4
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 3.3e-36 155.2 98 72.4
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 3.3e-36 155.2 98 72.4
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 3.3e-36 155.2 98 72.4
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 3.3e-36 155.2 98 73.5
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 4.2e-36 154.8 98 71.4
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 4.2e-36 154.8 98 72.4
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 4.2e-36 154.8 98 72.4
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 5.5e-36 154.5 98 74.5
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 7.2e-36 154.1 103 68.9
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 7.2e-36 154.1 98 72.4
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 9.5e-36 153.7 98 71.4
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 9.5e-36 153.7 98 71.4
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 9.5e-36 153.7 98 71.4
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 9.5e-36 153.7 98 71.4
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 1.2e-35 153.3 99 71.7
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 1.2e-35 153.3 98 71.4
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 2.1e-35 152.5 97 72.2
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 8.0e-35 150.6 98 71.4
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 8.0e-35 150.6 98 71.4
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 8.0e-35 150.6 98 71.4
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 8.0e-35 150.6 98 71.4
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 8.0e-35 150.6 98 71.4
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 1.4e-34 149.8 105 64.8
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.8e-34 149.4 97 70.1
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 5.7e-33 144.4 105 62.9
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 8.3e-32 140.6 80 73.8
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 4.1e-31 138.3 69 85.5
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.0e-29 133.7 90 66.7
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 2.9e-29 132.1 68 80.9
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 2.0e-25 119.4 74 79.7
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.3e-24 116.7 88 58.0
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 8.3e-24 114.0 80 61.2
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.4e-23 113.2 80 61.2
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 3.2e-23 112.1 79 65.8
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 4.1e-23 111.7 88 61.4
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 9.2e-23 110.5 74 71.6
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 2.7e-22 109.0 71 69.0
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 1.0e-21 107.1 68 73.5
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 3.0e-21 105.5 84 54.8
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 5.0e-21 104.8 65 76.9
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 6.2e-19 97.8 54 74.1
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 1.9e-15 86.3 98 52.0
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 3.2e-15 85.5 75 45.3
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 6.6e-13 77.8 81 46.9
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 8.6e-13 77.4 50 74.0
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 6.8e-10 67.8 54 64.8
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 8.9e-10 67.4 93 37.6
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 1.1e-07 60.5 47 66.0
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 1.1e-07 60.5 36 80.6
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 7.1e-07 57.8 39 71.8


User provided reference genes

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