Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 7.0e-281 969.9 477 100.0
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 8.9e-252 873.2 477 91.0
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 7.1e-225 783.9 467 81.2
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.1e-204 716.8 456 74.8
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 4.1e-204 714.9 447 76.7
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 7.7e-203 710.7 454 75.8
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 7.7e-203 710.7 468 74.6
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 2.2e-202 709.1 460 75.9
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 2.2e-202 709.1 451 75.4
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 2.2e-202 709.1 435 77.9
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 3.8e-202 708.4 462 73.2
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 8.5e-202 707.2 462 74.2
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 1.9e-201 706.1 456 74.3
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 2.5e-201 705.7 435 77.2
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 3.2e-201 705.3 448 74.8
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 5.5e-201 704.5 448 74.6
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 9.4e-201 703.7 456 74.3
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.2e-200 703.4 447 75.8
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 2.1e-200 702.6 458 73.6
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 2.7e-200 702.2 436 76.4
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 2.7e-200 702.2 451 73.4
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 3.6e-200 701.8 467 71.9
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.8e-199 699.5 466 72.7
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.3e-199 699.1 451 75.4
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 2.3e-199 699.1 449 74.8
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 3.9e-199 698.4 455 72.5
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 5.1e-199 698.0 458 73.4
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 6.7e-199 697.6 458 73.1
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 8.8e-199 697.2 447 73.2
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 1.1e-198 696.8 449 73.9
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 1.1e-198 696.8 451 74.9
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.5e-198 696.4 460 72.2
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 2.0e-198 696.0 464 72.2
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 9.7e-198 693.7 457 73.5
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 9.7e-198 693.7 439 75.2
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 9.7e-198 693.7 459 71.9
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.7e-197 693.0 450 73.1
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 1.7e-197 693.0 444 74.1
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 3.7e-197 691.8 460 71.3
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 6.3e-197 691.0 447 73.2
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 8.2e-197 690.6 455 72.5
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 8.2e-197 690.6 445 73.5
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 1.8e-196 689.5 473 71.9
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.8e-196 689.5 447 74.3
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 4.1e-196 688.3 450 74.4
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 4.1e-196 688.3 443 74.0
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 5.3e-196 688.0 456 72.6
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 9.1e-196 687.2 434 76.5
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 1.2e-195 686.8 469 71.2
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 3.4e-195 685.3 440 73.6
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 3.4e-195 685.3 444 72.7
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 5.9e-195 684.5 436 74.3
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 5.9e-195 684.5 433 76.4
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 5.9e-195 684.5 445 73.5
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 7.7e-195 684.1 436 74.3
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.7e-194 682.9 451 72.7
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.7e-194 682.9 451 72.7
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 1.7e-194 682.9 470 71.7
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 2.2e-194 682.6 436 74.1
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 2.2e-194 682.6 467 70.9
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 2.2e-194 682.6 445 73.3
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 2.2e-194 682.6 465 71.6
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 5.0e-194 681.4 451 73.2
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.1e-193 680.2 469 68.4
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 1.9e-193 679.5 448 73.4
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 1.9e-193 679.5 449 71.5
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.2e-193 678.7 445 73.3
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 4.2e-193 678.3 442 73.8
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 4.2e-193 678.3 447 72.9
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 7.2e-193 677.6 457 70.9
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 7.2e-193 677.6 438 72.8
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 1.6e-192 676.4 423 75.4
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 2.1e-192 676.0 421 75.8
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 2.1e-192 676.0 430 74.7
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 2.7e-192 675.6 452 72.6
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.7e-192 675.6 452 72.3
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.7e-192 675.6 452 72.3
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 4.7e-192 674.9 452 72.3
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 4.7e-192 674.9 452 72.3
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 1.0e-191 673.7 462 71.0
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 1.4e-191 673.3 432 72.5
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 1.8e-191 672.9 439 73.6
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 2.3e-191 672.5 446 72.0
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 5.1e-191 671.4 473 69.6
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 5.1e-191 671.4 449 71.9
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 5.1e-191 671.4 440 73.9
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 5.1e-191 671.4 446 71.3
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 8.8e-191 670.6 447 71.8
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.5e-190 669.8 433 73.4
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 4.4e-190 668.3 447 72.3
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 5.7e-190 667.9 385 82.9
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 2.8e-189 665.6 451 71.0
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 3.7e-189 665.2 429 74.6
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 4.8e-189 664.8 455 71.0
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 6.3e-189 664.5 457 71.3
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.1e-188 663.7 452 71.5
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 7.0e-188 661.0 458 71.2
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 9.1e-188 660.6 462 69.7
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 2.0e-187 659.4 455 71.2
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 4.5e-187 658.3 453 69.5
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 5.9e-187 657.9 440 72.7
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 5.9e-187 657.9 448 70.1
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 1.3e-186 656.8 464 69.6
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 2.9e-186 655.6 462 69.5
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.9e-185 652.9 440 71.6
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 4.2e-185 651.7 456 68.6
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 5.5e-185 651.4 449 69.3
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 9.4e-185 650.6 449 68.8
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.1e-184 649.4 455 68.6
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.1e-184 649.4 455 68.6
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 2.1e-184 649.4 441 70.1
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 2.7e-184 649.0 453 68.0
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 3.6e-184 648.7 429 71.8
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 4.7e-184 648.3 437 71.9
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 6.1e-184 647.9 439 70.4
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 2.3e-183 646.0 434 71.0
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 4.0e-183 645.2 453 67.8
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 1.1e-182 643.7 454 67.8
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 2.6e-182 642.5 433 71.8
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 7.5e-182 641.0 448 68.1
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 9.7e-182 640.6 450 68.4
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 3.7e-181 638.6 447 69.4
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.1e-180 637.1 465 66.2
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.4e-180 636.7 411 74.9
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.6e-179 633.3 406 75.4
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.6e-179 633.3 450 70.2
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 2.7e-179 632.5 454 68.9
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 3.5e-179 632.1 434 69.1
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.7e-178 629.8 458 65.7
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 1.7e-178 629.8 446 67.9
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 9.4e-177 624.0 396 75.5
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.1e-176 622.9 442 66.5
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 4.0e-175 618.6 421 70.8
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 4.1e-172 608.6 439 67.9
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.9e-169 599.7 452 66.2
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 3.0e-167 592.4 381 73.2
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 4.0e-167 592.0 369 76.7
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 6.8e-167 591.3 448 66.1
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.3e-165 587.0 454 63.4
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 3.3e-161 572.4 394 69.3
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 1.6e-160 570.1 390 70.3
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 2.9e-157 559.3 366 73.2
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 5.6e-153 545.0 387 69.3
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 8.3e-149 531.2 427 62.1
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 3.0e-146 522.7 441 60.1
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 4.7e-144 515.4 452 59.7
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.3e-141 507.3 434 57.8
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.2e-139 500.7 435 57.7
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.4e-135 487.3 452 55.8
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 8.6e-130 468.0 437 54.2
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 6.2e-120 435.3 320 64.1
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 7.1e-116 421.8 287 69.3
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 5.5e-108 395.6 438 48.4
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 3.7e-104 382.9 235 75.7
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 5.3e-103 379.0 432 44.7
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.5e-102 375.9 277 66.4
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 1.2e-99 367.9 231 74.9
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 6.5e-93 345.5 453 43.0
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 7.9e-91 338.6 382 45.3
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 5.5e-68 262.7 280 52.1
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 8.0e-67 258.8 146 80.8
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 1.3e-53 214.9 159 71.7
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 7.8e-46 189.1 113 74.3
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.7e-43 179.9 139 63.3
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 1.0e-42 178.7 436 30.5
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.5e-38 163.7 90 80.0
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 4.4e-33 146.7 458 27.7
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 3.7e-24 117.1 108 53.7
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 3.5e-22 110.5 75 66.7
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 1.2e-14 85.5 64 59.4
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 9.6e-12 75.9 57 63.2
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 7.1e-07 59.7 43 67.4
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 1.2e-06 58.9 181 27.1
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.6e-06 58.5 43 65.1
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.6e-06 58.5 107 26.2


User provided reference genes

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