Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0225341 Helianthus annuus HOM05D001081 ORTHO05D004708 0.0e+00 1359.7 664 100.0
HanXRQChr08g0225291 Helianthus annuus HOM05D001081 ORTHO05D004708 1.6e-275 952.6 711 70.5
Lsat_1_v5_gn_8_5261 Lactuca sativa HOM05D001081 ORTHO05D004708 2.8e-264 915.2 671 69.7
HanXRQChr08g0225301 Helianthus annuus HOM05D001081 ORTHO05D004708 1.6e-243 846.3 565 76.3
Dinv35339 Davidia involucrata HOM05D001081 ORTHO05D004708 1.7e-200 703.4 632 57.3
Cfa016233 Carpinus fangiana HOM05D001081 ORTHO05D004708 9.3e-199 697.6 632 57.4
Nitab4.5_0000548g0110 Nicotiana tabacum HOM05D001081 ORTHO05D004708 8.2e-195 684.5 627 56.6
QL09p008772 Quercus lobata HOM05D001081 ORTHO05D004708 1.4e-191 673.7 634 55.5
vmacro06386 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 1.4e-191 673.7 642 54.8
Sopen03g022900 Solanum pennellii HOM05D001081 ORTHO05D004708 5.5e-191 671.8 642 54.5
TAR375G0280 Trochodendron aralioides HOM05D001081 ORTHO05D004708 6.1e-190 668.3 621 56.0
Actinidia08651 Actinidia chinensis HOM05D001081 ORTHO05D004708 9.7e-188 661.0 731 48.0
Prupe.2G309600 Prunus persica HOM05D001081 ORTHO05D004708 6.3e-187 658.3 645 53.5
Manes.01G183500 Manihot esculenta HOM05D001081 ORTHO05D004708 1.8e-186 656.8 646 54.3
Atru.chr12.2203 Acer truncatum HOM05D001081 ORTHO05D004708 1.5e-185 653.7 655 53.6
CiPaw.06G046000 Carya illinoinensis HOM05D001081 ORTHO05D004708 2.6e-185 652.9 536 62.9
Thecc.03G199500 Theobroma cacao HOM05D001081 ORTHO05D004708 3.4e-185 652.5 636 54.2
CSS0032097 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D004708 7.7e-185 651.4 688 52.3
MBI06_g13415_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D004708 5.0e-184 648.7 627 54.9
Gohir.D11G015300 Gossypium hirsutum HOM05D001081 ORTHO05D004708 7.2e-183 644.8 637 54.3
Gorai.007G015700 Gossypium raimondii HOM05D001081 ORTHO05D004708 1.6e-182 643.7 637 54.0
Nn1g00260 Nelumbo nucifera HOM05D001081 ORTHO05D004708 3.6e-182 642.5 632 54.9
Gohir.A11G015200 Gossypium hirsutum HOM05D001081 ORTHO05D004708 1.4e-181 640.6 637 53.8
CANSAT21G2573 Cannabis sativa HOM05D001081 ORTHO05D004708 3.9e-181 639.0 645 52.2
Ciclev10018477m.g Citrus clementina HOM05D001081 ORTHO05D004708 5.1e-181 638.6 642 52.0
Glyma.17G128700 Glycine max HOM05D001081 ORTHO05D004708 2.6e-180 636.3 634 53.3
CANSAT21G0069 Cannabis sativa HOM05D001081 ORTHO05D004708 7.4e-180 634.8 636 52.7
Medtr1g008050 Medicago truncatula HOM05D001081 ORTHO05D004708 7.4e-180 634.8 640 52.2
RcHm_v2.0_Chr1g0380531 Rosa chinensis HOM05D001081 ORTHO05D004708 1.7e-179 633.6 636 52.0
MD07G1288100 Malus domestica HOM05D001081 ORTHO05D004708 2.2e-179 633.3 625 52.5
CANSAT21G1825 Cannabis sativa HOM05D001081 ORTHO05D004708 3.7e-179 632.5 634 51.9
Lj1C1020T7 Lonicera japonica HOM05D001081 ORTHO05D004708 2.2e-176 623.2 695 50.9
FvH4_7g31550 Fragaria vesca HOM05D001081 ORTHO05D004708 3.8e-176 622.5 631 52.0
Lj4g0008522 Lotus japonicus HOM05D001081 ORTHO05D004708 6.5e-176 621.7 634 52.5
AUR62019407 Chenopodium quinoa HOM05D001081 ORTHO05D004708 1.5e-175 620.5 638 50.6
Aqoxy3G00072 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 9.4e-175 617.8 631 52.3
TPR.G12082 Trifolium pratense HOM05D001081 ORTHO05D004708 1.8e-173 613.6 641 49.6
Psat6g034720 Pisum sativum HOM05D001081 ORTHO05D004708 3.0e-173 612.8 642 52.3
RcHm_v2.0_Chr1g0381531 Rosa chinensis HOM05D001081 ORTHO05D004708 2.2e-171 606.7 632 50.3
THA.LOC104798901 Tarenaya hassleriana HOM05D001081 ORTHO05D004708 1.4e-170 604.0 644 50.3
PSO063G4550 Papaver somniferum HOM05D001081 ORTHO05D004708 5.3e-170 602.1 634 50.8
GSVIVG01038555001 Vitis vinifera HOM05D001081 ORTHO05D004708 2.0e-169 600.1 767 45.9
Rhsim03G0209100 Rhododendron simsii HOM05D001081 ORTHO05D004708 3.5e-169 599.4 648 50.8
Thhalv10003512m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 2.9e-168 596.3 640 51.1
BcaNung01219 Brassica carinata HOM05D001081 ORTHO05D004708 8.5e-168 594.7 637 50.9
FAN06G3553 Fragaria x ananassa HOM05D001081 ORTHO05D004708 4.2e-167 592.4 529 57.5
A06p35020 Brassica napus HOM05D001081 ORTHO05D004708 5.5e-167 592.0 635 50.6
AL6G35710 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 9.4e-167 591.3 636 50.5
FAN06G1778 Fragaria x ananassa HOM05D001081 ORTHO05D004708 9.4e-167 591.3 529 57.5
AT5G24280 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 1.2e-166 590.9 636 50.8
C07p43490 Brassica napus HOM05D001081 ORTHO05D004708 2.1e-166 590.1 639 50.7
Lalb_Chr10g0091361 Lupinus albus HOM05D001081 ORTHO05D004708 3.6e-166 589.3 534 56.9
Thhalv10003513m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 4.7e-166 589.0 635 49.4
CARHR189220 Cardamine hirsuta HOM05D001081 ORTHO05D004708 1.0e-165 587.8 635 50.9
Carub.0006s2205 Capsella rubella HOM05D001081 ORTHO05D004708 1.4e-165 587.4 636 50.6
vmacro22638 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 1.4e-165 587.4 684 48.8
ATR0602G075 Amborella trichopoda HOM05D001081 ORTHO05D004708 4.0e-165 585.9 638 51.1
C07p43530 Brassica napus HOM05D001081 ORTHO05D004708 4.4e-164 582.4 635 49.4
BolC7t44880H Brassica oleracea HOM05D001081 ORTHO05D004708 4.4e-164 582.4 635 49.4
BolC7t44875H Brassica oleracea HOM05D001081 ORTHO05D004708 1.4e-162 577.4 670 48.7
BraA06t26428Z Brassica rapa HOM05D001081 ORTHO05D004708 2.4e-162 576.6 645 50.1
Lj1C1018T17 Lonicera japonica HOM05D001081 ORTHO05D004708 1.6e-161 573.9 673 49.3
Sabra15G0067900 Salix brachista HOM05D001081 ORTHO05D004708 1.6e-161 573.9 724 46.7
FAN01G0187 Fragaria x ananassa HOM05D001081 ORTHO05D004708 2.7e-161 573.2 545 55.6
Ah.07g205570 Amaranthus hybridus HOM05D001081 ORTHO05D004708 2.2e-160 570.1 658 47.3
EL10Ac3g05278 Beta vulgaris HOM05D001081 ORTHO05D004708 5.0e-160 568.9 660 48.3
PSO781G0289 Papaver somniferum HOM05D001081 ORTHO05D004708 5.5e-159 565.5 638 48.6
A06p35070 Brassica napus HOM05D001081 ORTHO05D004708 1.2e-158 564.3 655 48.7
SGA_v2.0_scaffold192G40538 Striga asiatica HOM05D001081 ORTHO05D004708 6.1e-158 562.0 630 48.7
BraA06t26425Z Brassica rapa HOM05D001081 ORTHO05D004708 8.0e-158 561.6 530 55.5
BcaNung01806 Brassica carinata HOM05D001081 ORTHO05D004708 7.5e-156 555.1 633 48.3
Cc02_g01510 Coffea canephora HOM05D001081 ORTHO05D004708 4.9e-155 552.4 794 41.9
Hund21007 Selenicereus undatus HOM05D001081 ORTHO05D004708 6.3e-155 552.0 609 49.1
CARHR189240 Cardamine hirsuta HOM05D001081 ORTHO05D004708 9.2e-154 548.1 638 49.1
SalBow4G1120 Salvia bowleyana HOM05D001081 ORTHO05D004708 4.7e-150 535.8 567 51.0
Migut.F00209 Erythranthe guttata HOM05D001081 ORTHO05D004708 1.6e-145 520.8 480 55.8
Carub.0006s2203 Capsella rubella HOM05D001081 ORTHO05D004708 2.7e-145 520.0 508 54.3
CARHR189250 Cardamine hirsuta HOM05D001081 ORTHO05D004708 6.6e-144 515.4 623 46.4
Aa31LG11G3510 Aethionema arabicum HOM05D001081 ORTHO05D004708 1.9e-135 487.3 557 49.9
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 1.4e-130 471.1 624 44.2
AUR62006087 Chenopodium quinoa HOM05D001081 ORTHO05D004708 2.1e-129 467.2 668 41.6
Potri.012G016100 Populus trichocarpa HOM05D001081 ORTHO05D004708 1.0e-128 464.9 428 56.5
COL.COLO4_16768 Corchorus olitorius HOM05D001081 ORTHO05D004708 3.9e-128 463.0 429 55.7
Medtr1g007950 Medicago truncatula HOM05D001081 ORTHO05D004708 8.1e-126 455.3 494 50.0
Eucgr.G00111 Eucalyptus grandis HOM05D001081 ORTHO05D004708 1.4e-125 454.5 477 52.0
Eucgr.G00143 Eucalyptus grandis HOM05D001081 ORTHO05D004708 7.1e-122 442.2 488 50.6
Eucgr.H05016 Eucalyptus grandis HOM05D001081 ORTHO05D004708 9.2e-122 441.8 477 50.9
Eucgr.G00092 Eucalyptus grandis HOM05D001081 ORTHO05D004708 1.2e-121 441.4 477 51.2
CAN.G481.14 Capsicum annuum HOM05D001081 ORTHO05D004708 7.8e-121 438.7 665 41.2
TWI39G0445 Tripterygium wilfordii HOM05D001081 ORTHO05D004708 3.4e-116 423.3 417 52.3
DCAR_008928 Daucus carota HOM05D001081 ORTHO05D004708 3.2e-106 390.2 525 44.4
Mapoly0076s0015 Marchantia polymorpha HOM05D001081 ORTHO05D004708 1.1e-98 365.2 680 36.8
Peaxi162Scf00740g00138 Petunia axillaris HOM05D001081 ORTHO05D004708 2.1e-97 360.9 325 56.9
Solyc03g083130.3 Solanum lycopersicum HOM05D001081 ORTHO05D004708 2.0e-92 344.4 311 57.6
Mapoly0111s0028 Marchantia polymorpha HOM05D001081 ORTHO05D004708 1.6e-89 334.7 643 35.6
HanXRQChr10g0291811 Helianthus annuus HOM05D001081 ORTHO05D004708 2.1e-89 334.3 178 92.7
Ca_12793_v3 Cicer arietinum L. HOM05D001081 ORTHO05D004708 1.9e-87 327.8 328 52.4
SMO213G0001 Selaginella moellendorffii HOM05D001081 ORTHO05D004708 3.3e-87 327.0 682 34.3
Nitab4.5_0006933g0030 Nicotiana tabacum HOM05D001081 ORTHO05D004708 4.8e-86 323.2 356 49.4
Sabra15G0068100 Salix brachista HOM05D001081 ORTHO05D004708 6.3e-86 322.8 330 54.2
Sp2g23080 Schrenkiella parvula HOM05D001081 ORTHO05D004708 1.4e-85 321.6 336 53.6
Aqoxy4G01594 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 1.8e-85 321.2 530 38.9
Oeu041052.4 Olea europaea HOM05D001081 ORTHO05D004708 1.3e-83 315.1 314 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1615 Anthoceros agrestis HOM05D001081 ORTHO05D004708 8.5e-83 312.4 558 36.0
Cpa.g.sc3.89 Carica papaya HOM05D001081 ORTHO05D004708 1.1e-82 312.0 316 53.8
AagrBONN_evm.TU.Sc2ySwM_117.3719 Anthoceros agrestis HOM05D001081 ORTHO05D004708 1.6e-81 308.1 556 36.9
Ca_12791_v3 Cicer arietinum L. HOM05D001081 ORTHO05D004708 3.9e-80 303.5 314 51.3
Hma1.2p1_0404F.1_g145340 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 4.8e-78 296.6 315 50.2
Hma1.2p1_0404F.1_g145390 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 6.7e-72 276.2 306 52.0
Cpa.g.sc3.91 Carica papaya HOM05D001081 ORTHO05D004708 5.2e-64 250.0 283 48.4
Hma1.2p1_0404F.1_g145350 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 2.6e-63 247.7 246 54.9
SGA_v2.0_scaffold9G04846 Striga asiatica HOM05D001081 ORTHO05D004708 3.0e-56 224.2 185 63.8
TWI39G0245 Tripterygium wilfordii HOM05D001081 ORTHO05D004708 3.2e-50 204.1 209 52.6
Hma1.2p1_0404F.1_g145380 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 5.4e-45 186.8 204 47.1
Gohir.D11G256700 Gossypium hirsutum HOM05D001081 ORTHO05D010708 2.0e-44 184.9 147 62.6
Sabra12G0016000 Salix brachista HOM05D001081 ORTHO05D004708 3.5e-44 184.1 164 56.1
Gorai.010G233200 Gossypium raimondii HOM05D001081 ORTHO05D010708 3.2e-42 177.6 219 45.7
AL6G35700 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 7.2e-42 176.4 160 56.2
Sabra11G0071800 Salix brachista HOM05D001060 ORTHO05D004708 8.8e-40 169.5 164 54.9
Medtr1g007990 Medicago truncatula HOM05D001081 ORTHO05D004708 2.0e-39 168.3 154 53.2
Pp3c8_21182 Physcomitrium patens HOM05D001081 ORTHO05D004708 2.7e-36 157.9 531 28.2
ECA233G5228 Erigeron canadensis HOM05D001081 ORTHO05D004708 9.8e-31 139.4 145 53.1
Nitab4.5_0006933g0040 Nicotiana tabacum HOM05D001081 ORTHO05D004708 9.8e-31 139.4 177 44.1
Thecc.03G196700 Theobroma cacao HOM05D001081 ORTHO05D004708 1.7e-30 138.7 162 49.4
Gorai.011G131700 Gossypium raimondii HOM05D001081 ORTHO05D004708 7.0e-29 133.3 109 60.6
PSO170G6091 Papaver somniferum HOM05D001081 ORTHO05D004708 3.0e-27 127.9 179 39.1
Eucgr.G00110 Eucalyptus grandis HOM05D001081 ORTHO05D004708 6.6e-27 126.7 96 64.6
Pp3c8_21170 Physcomitrium patens HOM05D001081 ORTHO05D004708 1.9e-26 125.2 471 26.3
Lsat_1_v5_gn_9_3381 Lactuca sativa HOM05D001081 ORTHO05D004708 6.8e-24 116.7 75 72.0
Eucgr.G00091 Eucalyptus grandis HOM05D001081 ORTHO05D004708 3.4e-23 114.4 89 64.0
FvH4_7g31511 Fragaria vesca HOM05D001081 ORTHO05D004708 4.4e-23 114.0 160 39.4
DCAR_008935 Daucus carota HOM05D001081 ORTHO05D004708 5.8e-23 113.6 97 55.7
Peaxi162Scf00740g00140 Petunia axillaris HOM05D001081 ORTHO05D024756 1.7e-22 112.1 140 43.6
Eucgr.H05019 Eucalyptus grandis HOM05D001081 ORTHO05D004708 2.9e-22 111.3 89 62.9
SEGI_22535 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 4.9e-22 110.5 103 53.4
FAN01G2325 Fragaria x ananassa HOM05D001081 ORTHO05D004708 1.1e-21 109.4 79 57.0
Sopen03g019380 Solanum pennellii HOM05D001081 ORTHO05D029255 4.1e-21 107.5 130 46.2
Sopen03g022620 Solanum pennellii HOM05D001081 ORTHO05D004708 7.0e-21 106.7 133 42.9
Actinidia04725 Actinidia chinensis HOM05D001081 ORTHO05D004708 1.5e-18 99.0 68 64.7
Solyc03g083120.3 Solanum lycopersicum HOM05D001081 ORTHO05D024756 3.3e-18 97.8 172 33.7
Pp3c22_17807 Physcomitrium patens HOM05D001081 ORTHO05D004708 2.8e-17 94.7 182 34.1
Actinidia27675 Actinidia chinensis HOM05D001081 ORTHO05D004708 1.1e-16 92.8 68 61.8
Lsat_1_v5_gn_6_63561 Lactuca sativa HOM05D001081 ORTHO05D004708 2.3e-16 91.7 59 76.3
Solyc03g083190.3 Solanum lycopersicum HOM05D001081 ORTHO05D004708 8.9e-16 89.7 114 45.6
Lsat_1_v5_gn_3_127020 Lactuca sativa HOM05D001700 ORTHO05D004708 1.3e-14 85.9 59 67.8
SEGI_37251 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 1.3e-14 85.9 142 39.4
Carub.0006s2204 Capsella rubella HOM05D001081 ORTHO05D024756 1.1e-13 82.8 140 34.3
SEGI_15117 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 7.1e-13 80.1 149 32.2
Actinidia04689 Actinidia chinensis HOM05D001081 ORTHO05D004708 1.7e-11 75.5 55 61.8
Lsat_1_v5_gn_0_23101 Lactuca sativa HOM05D001081 ORTHO05D013496 1.9e-10 72.0 45 75.6
Migut.F00208 Erythranthe guttata HOM05D001081 ORTHO05D004708 2.5e-10 71.6 131 33.6
Cpa.g.sc3.90 Carica papaya HOM05D000004 ORTHO05D000002 7.3e-10 70.1 70 47.1
Hma1.2p1_0013F.1_g008960 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 1.2e-09 69.3 46 71.7
Lsat_1_v5_gn_8_60400 Lactuca sativa HOM05D001081 ORTHO05D001168 1.4e-08 65.9 44 72.7
Lsat_1_v5_gn_8_107360 Lactuca sativa HOM05D001081 ORTHO05D230335 3.1e-08 64.7 47 63.8
HanXRQChr06g0165641 Helianthus annuus HOM05D001081 ORTHO05D024756 2.6e-07 61.6 42 73.8
HanXRQChr08g0231511 Helianthus annuus HOM05D001081 ORTHO05D024756 2.6e-07 61.6 42 73.8
Cpa.g.sc99.28 Carica papaya HOM05D001081 ORTHO05D004708 4.4e-07 60.8 60 50.0
AUR62000987 Chenopodium quinoa HOM05D001081 ORTHO05D004708 5.8e-07 60.5 44 68.2
Dinv08524 Davidia involucrata HOM05D001081 ORTHO05D004708 7.6e-07 60.1 38 73.7
Sopen03g022930 Solanum pennellii HOM05D001081 ORTHO05D004708 3.8e-06 57.8 44 61.4


User provided reference genes

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