Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0225061 Helianthus annuus HOM05D011053 ORTHO05D010547 6.1e-280 966.8 487 100.0
HanXRQChr07g0197521 Helianthus annuus HOM05D011053 ORTHO05D010547 2.3e-247 858.6 524 85.7
HanXRQChr16g0526441 Helianthus annuus HOM05D011053 ORTHO05D010547 3.6e-75 286.6 161 90.1
HanXRQChr02g0058501 Helianthus annuus HOM05D011053 ORTHO05D010547 8.4e-72 275.4 403 39.2
HanXRQChr11g0327291 Helianthus annuus HOM05D011053 ORTHO05D010547 1.8e-61 241.1 451 35.3
HanXRQChr04g0126351 Helianthus annuus HOM05D011053 ORTHO05D010547 5.1e-61 239.6 443 36.6
Lsat_1_v5_gn_9_116400 Lactuca sativa HOM05D011053 ORTHO05D010547 2.0e-57 227.6 305 43.6
HanXRQChr05g0159821 Helianthus annuus HOM05D011053 ORTHO05D010547 5.5e-55 219.5 410 33.7
HanXRQChr04g0115711 Helianthus annuus HOM05D011053 ORTHO05D010547 7.6e-49 199.1 370 33.5
ECA240G4800 Erigeron canadensis HOM05D000096 ORTHO05D000045 2.3e-45 187.6 376 31.9
HanXRQChr06g0172761 Helianthus annuus HOM05D011053 ORTHO05D010547 3.9e-45 186.8 206 45.6
ECA238G0409 Erigeron canadensis HOM05D000096 ORTHO05D000045 4.1e-42 176.8 413 30.0
HanXRQChr09g0251611 Helianthus annuus HOM05D011053 ORTHO05D010547 8.5e-40 169.1 176 48.3
HanXRQChr02g0048691 Helianthus annuus HOM05D011053 ORTHO05D010547 2.5e-39 167.5 482 28.8
HanXRQChr10g0285501 Helianthus annuus HOM05D011053 ORTHO05D010547 2.5e-31 141.0 260 37.3
HanXRQChr02g0040311 Helianthus annuus HOM05D008839 ORTHO05D010547 3.6e-30 137.1 418 26.3
HanXRQChr12g0354851 Helianthus annuus HOM05D011053 ORTHO05D010547 1.4e-29 135.2 165 40.6
HanXRQChr03g0065831 Helianthus annuus HOM05D011053 ORTHO05D010547 1.8e-29 134.8 70 94.3
HanXRQChr16g0521991 Helianthus annuus HOM05D008839 ORTHO05D010547 9.7e-28 129.0 467 24.6
HanXRQChr11g0337461 Helianthus annuus HOM05D011053 ORTHO05D010547 2.9e-24 117.5 432 27.8
HanXRQChr08g0233401 Helianthus annuus HOM05D008839 ORTHO05D010547 6.5e-24 116.3 477 23.9
ECA238G2960 Erigeron canadensis HOM05D000096 ORTHO05D000045 4.0e-21 107.1 305 25.9
ECA246G0696 Erigeron canadensis HOM05D000096 ORTHO05D000045 5.7e-20 103.2 443 22.6
QL06p039579 Quercus lobata HOM05D002907 ORTHO05D000065 7.5e-20 102.8 417 24.5
Thecc.04G012000 Theobroma cacao HOM05D000096 ORTHO05D000045 9.7e-20 102.4 443 24.2
ECA247G1268 Erigeron canadensis HOM05D000096 ORTHO05D002173 6.3e-19 99.8 259 27.8
RcHm_v2.0_Chr2g0150581 Rosa chinensis HOM05D007856 ORTHO05D003348 1.1e-18 99.0 484 22.5
Hma1.2p1_0045F.1_g026410 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 3.5e-17 94.0 435 23.4
QL05p044516 Quercus lobata HOM05D002907 ORTHO05D000065 4.5e-17 93.6 438 24.7
Thecc.03G185000 Theobroma cacao HOM05D007876 ORTHO05D000065 2.5e-15 87.8 448 23.2
Lsat_1_v5_gn_1_127421 Lactuca sativa HOM05D052696 ORTHO05D010547 3.2e-15 87.4 221 31.2
Peaxi162Scf00005g02517 Petunia axillaris HOM05D002907 ORTHO05D005554 4.2e-15 87.0 402 23.6
Hma1.2p1_0006F.1_g004680 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 5.5e-15 86.7 404 24.8
Lsat_1_v5_gn_5_161140 Lactuca sativa HOM05D008839 ORTHO05D010547 5.5e-15 86.7 394 23.1
TWI77G0313 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 5.5e-15 86.7 411 25.1
ECA234G4521 Erigeron canadensis HOM05D011053 ORTHO05D010547 9.4e-15 85.9 88 43.2
ECA233G0787 Erigeron canadensis HOM05D000096 ORTHO05D000647 1.2e-14 85.5 97 36.1
Os07g0190600 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D007430 1.2e-14 85.5 406 23.4
Peaxi162Scf00386g00927 Petunia axillaris HOM05D002907 ORTHO05D005554 1.2e-14 85.5 380 23.9
RcHm_v2.0_Chr1g0371171 Rosa chinensis HOM05D006849 ORTHO05D003348 1.4e-13 82.0 389 24.9
TWI14G1065 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.8e-13 81.6 382 26.7
Lsat_1_v5_gn_5_58000 Lactuca sativa HOM05D008839 ORTHO05D010547 8.8e-13 79.3 231 24.2
Lsat_1_v5_gn_6_55260 Lactuca sativa HOM05D003290 ORTHO05D003866 8.8e-13 79.3 204 25.5
QL93p0100_0313 Quercus lobata HOM05D000038 ORTHO05D000612 8.8e-13 79.3 315 27.3
Lsat_1_v5_gn_8_68800 Lactuca sativa HOM05D008839 ORTHO05D010547 1.5e-12 78.6 266 24.1
Potri.019G061550 Populus trichocarpa HOM05D006849 ORTHO05D003348 1.5e-12 78.6 322 24.2
FvH4_5g21501 Fragaria vesca HOM05D006849 ORTHO05D003348 2.0e-12 78.2 383 21.9
TWI73G0686 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 2.0e-12 78.2 322 23.6
Thecc.04G155200 Theobroma cacao HOM05D000096 ORTHO05D000045 3.4e-12 77.4 347 23.9
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 4.4e-12 77.0 74 41.9
Potri.003G004401 Populus trichocarpa HOM05D006849 ORTHO05D003348 4.4e-12 77.0 236 25.0
Carub.0004s2878 Capsella rubella HOM05D000305 ORTHO05D000065 7.5e-12 76.3 393 22.4
PSO675G3596 Papaver somniferum HOM05D002907 ORTHO05D013727 1.7e-11 75.1 321 24.3
QL07p006362 Quercus lobata HOM05D002907 ORTHO05D005554 2.8e-11 74.3 213 28.6
Sopen11g022000 Solanum pennellii HOM05D002907 ORTHO05D005554 2.8e-11 74.3 406 23.4
ECA233G6247 Erigeron canadensis HOM05D000006 ORTHO05D001300 3.7e-11 73.9 214 27.1
Sopen09g023780 Solanum pennellii HOM05D002907 ORTHO05D005554 4.8e-11 73.6 406 23.4
SGA_v2.0_scaffold28G11887 Striga asiatica HOM05D002441 ORTHO05D000174 4.8e-11 73.6 419 21.2
FAN02G2385 Fragaria x ananassa HOM05D006849 ORTHO05D003348 8.3e-11 72.8 339 26.5
QL93p0160_0004 Quercus lobata HOM05D002907 ORTHO05D000065 1.4e-10 72.0 281 26.3
FAN06G0436 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.8e-10 71.6 384 25.8
TPR.G6063 Trifolium pratense HOM05D000096 ORTHO05D000065 1.8e-10 71.6 343 22.4
TWI56G0628 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.1e-10 70.9 417 21.3
DCAR_010741 Daucus carota HOM05D019742 ORTHO05D019081 5.4e-10 70.1 293 24.6
A09p40830 Brassica napus HOM05D000313 ORTHO05D000065 7.0e-10 69.7 414 22.0
BolC2t12325H Brassica oleracea HOM05D000313 ORTHO05D000065 9.1e-10 69.3 390 21.5
TWI38G0982 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 9.1e-10 69.3 400 21.0
Lsat_1_v5_gn_9_118901 Lactuca sativa HOM05D008839 ORTHO05D010547 2.0e-09 68.2 441 20.4
BcaC04g20225 Brassica carinata HOM05D000305 ORTHO05D000065 3.5e-09 67.4 421 21.9
Lsat_1_v5_gn_0_38321 Lactuca sativa HOM05D008839 ORTHO05D010547 4.5e-09 67.0 401 22.4
THA.LOC104813725 Tarenaya hassleriana HOM05D000313 ORTHO05D000065 4.5e-09 67.0 392 20.2
TWI32G0194 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 4.5e-09 67.0 417 20.4
BcaC05g27392 Brassica carinata HOM05D000313 ORTHO05D000065 7.7e-09 66.2 403 20.3
Lsat_1_v5_gn_8_146240 Lactuca sativa HOM05D008839 ORTHO05D010547 1.0e-08 65.9 177 23.7
BolC1t04960H Brassica oleracea HOM05D000313 ORTHO05D000065 1.7e-08 65.1 391 20.7
C01p35750 Brassica napus HOM05D000313 ORTHO05D000065 2.9e-08 64.3 420 20.7
Lsat_1_v5_gn_9_31800 Lactuca sativa HOM05D008839 ORTHO05D010547 3.8e-08 63.9 121 27.3
C02p24580 Brassica napus HOM05D000313 ORTHO05D000065 5.0e-08 63.5 391 20.7
Lsat_1_v5_gn_3_127341 Lactuca sativa HOM05D008839 ORTHO05D010547 6.5e-08 63.2 225 22.7
Potri.001G165480 Populus trichocarpa HOM05D018388 ORTHO05D003348 6.5e-08 63.2 309 24.3
QL07p005779 Quercus lobata HOM05D002907 ORTHO05D005554 6.5e-08 63.2 193 28.5
Zm00001eb388900 Zea mays HOM05D008312 ORTHO05D010433 6.5e-08 63.2 233 24.0
Thecc.09G096600 Theobroma cacao HOM05D000096 ORTHO05D000045 1.5e-07 62.0 284 24.3
Zm00001eb388870 Zea mays HOM05D008312 ORTHO05D010433 1.9e-07 61.6 256 22.7
BcaC06g36731 Brassica carinata HOM05D000313 ORTHO05D000065 1.2e-06 58.9 376 21.8
C07p23830 Brassica napus HOM05D000313 ORTHO05D000065 1.2e-06 58.9 374 20.1
C01p50060 Brassica napus HOM05D000313 ORTHO05D000065 1.6e-06 58.5 396 19.7
BcaB05g24308 Brassica carinata HOM05D000313 ORTHO05D000065 2.1e-06 58.2 433 19.4
CAN.G665.22 Capsicum annuum HOM05D002907 ORTHO05D005554 2.1e-06 58.2 217 26.3
CANSAT78G0666 Cannabis sativa HOM05D002907 ORTHO05D005554 3.6e-06 57.4 292 20.9
Solyc12g038200.3 Solanum lycopersicum HOM05D002700 ORTHO05D003228 3.6e-06 57.4 205 26.8
COL.COLO4_37009 Corchorus olitorius HOM05D007876 ORTHO05D007430 8.0e-06 56.2 258 22.9
FAN14G2538 Fragaria x ananassa HOM05D006849 ORTHO05D003348 8.0e-06 56.2 268 24.3
Sopen06g010830 Solanum pennellii HOM05D002907 ORTHO05D005554 8.0e-06 56.2 205 26.8


User provided reference genes

Program Settings