Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 1.8e-125 452.6 229 100.0
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 2.6e-100 369.0 237 83.1
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 8.8e-88 327.4 224 76.8
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 1.0e-83 313.9 229 71.2
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 2.2e-83 312.8 233 72.1
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 2.9e-83 312.4 231 71.4
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 7.2e-82 307.8 231 70.1
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 1.4e-80 303.5 235 68.1
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.8e-80 303.1 228 68.4
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 3.0e-80 302.4 228 68.0
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 3.9e-80 302.0 229 69.4
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 6.7e-80 301.2 227 70.5
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 6.7e-80 301.2 231 71.9
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 8.8e-80 300.8 223 71.7
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 8.8e-80 300.8 230 69.6
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.1e-79 300.4 231 69.3
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 7.4e-79 297.7 228 69.3
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 7.4e-79 297.7 228 69.3
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 1.3e-78 297.0 225 69.3
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 2.2e-78 296.2 225 71.6
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 1.4e-77 293.5 228 66.7
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 1.8e-77 293.1 230 68.3
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 2.4e-77 292.7 231 67.1
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 2.4e-77 292.7 228 66.7
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 4.1e-77 292.0 234 67.1
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 5.3e-77 291.6 229 67.2
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 7.0e-77 291.2 229 67.2
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 9.1e-77 290.8 226 66.8
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 9.1e-77 290.8 227 66.5
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.2e-76 290.4 230 66.5
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 1.2e-76 290.4 231 67.5
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.2e-76 290.4 232 66.8
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 1.5e-76 290.0 232 67.7
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 2.6e-76 289.3 232 67.2
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 4.5e-76 288.5 232 67.2
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 5.9e-76 288.1 233 67.8
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 7.7e-76 287.7 231 65.4
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.3e-75 287.0 232 67.7
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 1.7e-75 286.6 234 67.1
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 5.0e-75 285.0 227 66.5
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 1.9e-74 283.1 234 66.7
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 2.5e-74 282.7 234 66.7
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 3.2e-74 282.3 212 70.8
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.2e-73 280.4 223 66.8
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 4.7e-73 278.5 226 65.0
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 6.1e-73 278.1 229 63.3
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 1.8e-72 276.6 228 63.6
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 2.3e-72 276.2 238 66.0
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 2.3e-72 276.2 230 65.2
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 3.0e-72 275.8 232 63.8
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 3.0e-72 275.8 232 63.8
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 6.7e-72 274.6 224 67.0
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 9.7e-71 270.8 232 62.9
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 9.7e-71 270.8 211 68.7
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 5.3e-69 265.0 230 63.5
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 7.0e-69 264.6 230 62.6
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 1.2e-68 263.8 222 64.0
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 1.6e-68 263.5 210 66.7
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 3.5e-68 262.3 225 64.4
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 5.9e-68 261.5 225 61.3
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 7.7e-68 261.2 231 61.5
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 1.0e-67 260.8 234 59.4
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 1.3e-67 260.4 242 56.6
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 3.8e-67 258.8 227 63.0
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 6.5e-67 258.1 224 62.1
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 1.1e-66 257.3 228 60.1
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 3.2e-66 255.8 225 62.2
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 3.2e-66 255.8 222 62.2
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 5.5e-66 255.0 237 58.6
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 7.2e-66 254.6 223 62.3
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 7.2e-66 254.6 222 60.4
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 9.4e-66 254.2 224 61.6
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 1.2e-65 253.8 230 60.0
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 2.1e-65 253.1 210 62.9
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.6e-65 252.3 221 61.5
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 3.6e-65 252.3 222 58.6
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 4.7e-65 251.9 221 61.5
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 8.0e-65 251.1 233 61.8
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 1.0e-64 250.8 237 59.5
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 1.4e-64 250.4 228 60.5
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 1.8e-64 250.0 209 64.1
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 3.0e-64 249.2 225 60.4
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 3.0e-64 249.2 233 58.4
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 4.0e-64 248.8 231 57.1
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 8.8e-64 247.7 221 61.1
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 8.8e-64 247.7 221 60.6
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 1.5e-63 246.9 284 52.1
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 1.7e-62 243.4 238 57.6
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 4.8e-62 241.9 225 60.4
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 8.3e-62 241.1 270 51.1
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 1.4e-61 240.4 236 53.4
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 1.8e-61 240.0 229 58.1
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 1.6e-60 236.9 226 58.8
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 1.0e-59 234.2 228 57.9
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 5.5e-58 228.4 244 54.9
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 4.7e-57 225.3 219 57.1
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 8.8e-56 221.1 169 66.3
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 1.2e-55 220.7 227 56.4
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.6e-55 219.5 226 52.2
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 2.4e-53 213.0 229 52.0
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 7.7e-52 208.0 240 52.1
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.0e-51 207.6 233 48.9
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 3.8e-51 205.7 227 52.4
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 1.6e-49 200.3 263 45.2
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 8.0e-49 198.0 232 50.4
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 3.0e-48 196.1 228 51.8
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 5.2e-48 195.3 161 64.6
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 1.8e-45 186.8 237 47.7
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 2.3e-43 179.9 225 45.8
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 6.6e-43 178.3 230 45.7
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 4.7e-41 172.2 155 56.8
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 1.8e-40 170.2 231 42.0
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 2.3e-40 169.9 137 62.8
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 8.9e-40 167.9 217 43.3
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 3.7e-38 162.5 237 43.9
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 4.9e-38 162.2 170 51.2
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 2.4e-37 159.8 140 60.0
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 1.7e-35 153.7 134 61.9
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 2.5e-34 149.8 233 42.1
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 7.3e-34 148.3 214 43.5
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 4.0e-32 142.5 93 73.1
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 9.2e-29 131.3 95 64.2
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 5.1e-27 125.6 140 52.1
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 1.1e-26 124.4 128 56.2
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 2.6e-23 113.2 138 50.0
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 9.9e-23 111.3 127 51.2
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 7.1e-21 105.1 216 36.6
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 2.3e-19 100.1 218 32.6
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 3.0e-19 99.8 108 53.7
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.9e-19 99.4 134 44.8
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 1.4e-16 90.9 133 45.9
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 4.0e-16 89.4 109 43.1
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 1.3e-14 84.3 114 48.2
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 5.4e-13 79.0 104 49.0
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.6e-12 77.4 54 68.5
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 1.7e-11 73.9 183 28.4
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 2.3e-11 73.6 75 53.3
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 3.9e-11 72.8 75 52.0
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 9.6e-10 68.2 74 48.6
HanXRQChr01g0030741 Helianthus annuus HOM05D005662 ORTHO05D227858 1.7e-06 57.4 31 87.1


User provided reference genes

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