Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 1.9e-86 322.8 202 100.0
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 1.0e-84 317.0 202 98.5
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 2.0e-80 302.8 202 84.7
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 6.3e-74 281.2 199 86.4
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 1.1e-70 270.4 201 77.1
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 2.1e-69 266.2 203 74.9
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 3.1e-68 262.3 205 72.7
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 6.8e-68 261.2 204 74.5
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 2.6e-67 259.2 202 66.3
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 4.4e-67 258.5 201 69.2
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 4.4e-67 258.5 201 67.2
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 4.4e-67 258.5 203 75.4
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 5.8e-67 258.1 207 78.3
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 9.8e-67 257.3 203 67.0
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 1.3e-66 256.9 207 68.1
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 1.3e-66 256.9 208 75.0
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 3.7e-66 255.4 203 70.4
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 6.4e-66 254.6 202 78.7
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 6.4e-66 254.6 204 72.5
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 6.4e-66 254.6 199 72.9
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.1e-65 253.8 204 71.1
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 1.4e-65 253.4 198 81.8
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 1.9e-65 253.1 204 65.2
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.9e-65 253.1 195 81.5
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 2.4e-65 252.7 203 72.4
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 2.4e-65 252.7 202 73.3
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 4.1e-65 251.9 204 65.2
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 7.0e-65 251.1 207 63.8
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 2.0e-64 249.6 202 63.9
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 2.0e-64 249.6 202 65.3
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 2.0e-64 249.6 209 74.2
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 2.7e-64 249.2 199 79.9
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 3.5e-64 248.8 203 78.8
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 3.5e-64 248.8 207 63.3
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 7.8e-64 247.7 205 74.1
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 7.8e-64 247.7 205 69.3
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 7.8e-64 247.7 205 63.4
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 7.8e-64 247.7 213 75.6
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 1.0e-63 247.3 197 69.5
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.0e-63 247.3 193 81.9
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.3e-63 246.9 201 63.7
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 1.7e-63 246.5 202 65.8
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 2.3e-63 246.1 208 76.9
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 3.9e-63 245.4 196 65.8
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 3.9e-63 245.4 204 63.7
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 5.0e-63 245.0 203 80.3
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 5.0e-63 245.0 205 65.9
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 5.0e-63 245.0 187 83.4
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 6.6e-63 244.6 203 63.1
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 1.1e-62 243.8 209 63.2
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.5e-62 243.4 191 80.1
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 1.5e-62 243.4 203 66.5
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 1.9e-62 243.0 189 80.4
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 2.5e-62 242.7 203 74.4
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 2.5e-62 242.7 203 64.5
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 2.5e-62 242.7 189 76.7
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 3.3e-62 242.3 203 65.0
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 3.3e-62 242.3 200 70.0
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 4.3e-62 241.9 203 64.5
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.3e-62 241.9 202 63.9
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 4.3e-62 241.9 195 80.5
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 4.3e-62 241.9 203 62.6
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 4.3e-62 241.9 200 64.5
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 7.3e-62 241.1 204 70.6
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 7.3e-62 241.1 202 74.3
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.3e-62 241.1 205 63.4
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 7.3e-62 241.1 206 66.0
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 9.5e-62 240.7 204 65.2
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.2e-61 240.4 206 62.6
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 1.2e-61 240.4 203 67.5
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 2.1e-61 239.6 203 68.5
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 2.1e-61 239.6 187 75.4
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 4.7e-61 238.4 202 70.8
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 4.7e-61 238.4 203 70.0
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 4.7e-61 238.4 202 67.3
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 4.7e-61 238.4 206 71.4
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 6.2e-61 238.0 203 63.5
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 8.0e-61 237.7 202 69.3
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 8.0e-61 237.7 202 73.8
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 8.0e-61 237.7 202 69.3
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 1.1e-60 237.3 204 69.6
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 1.1e-60 237.3 134 82.8
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 4.0e-60 235.3 201 71.1
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 1.2e-59 233.8 203 70.4
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 1.2e-59 233.8 204 74.0
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 3.4e-59 232.3 199 61.3
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 7.5e-59 231.1 199 61.3
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 2.2e-58 229.6 201 61.2
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 2.9e-58 229.2 199 60.3
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 8.3e-58 227.6 194 68.6
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 1.1e-57 227.3 201 70.6
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 1.1e-57 227.3 199 64.8
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 1.6e-56 223.4 186 71.0
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 2.1e-56 223.0 118 85.6
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 4.6e-56 221.9 206 67.0
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 6.0e-56 221.5 191 79.1
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 2.3e-55 219.5 134 78.4
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.3e-55 219.5 134 78.4
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.3e-55 219.5 134 78.4
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 5.1e-55 218.4 132 77.3
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 1.5e-54 216.9 128 80.5
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 2.1e-53 213.0 206 68.9
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 8.1e-53 211.1 111 85.6
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 8.1e-53 211.1 111 85.6
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.0e-52 208.8 134 75.4
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 8.9e-52 207.6 201 70.1
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 1.3e-50 203.8 115 80.0
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.3e-50 203.8 202 59.4
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 3.2e-49 199.1 201 62.2
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 2.1e-48 196.4 114 77.2
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 2.7e-48 196.1 113 78.8
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 4.3e-46 188.7 151 68.9
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 2.1e-45 186.4 107 82.2
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 6.2e-45 184.9 158 81.6
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 4.0e-44 182.2 110 75.5
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 4.0e-44 182.2 201 60.7
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 2.9e-42 176.0 100 82.0
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 6.4e-42 174.9 91 87.9
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 3.0e-39 166.0 155 56.1
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 8.7e-31 137.9 205 49.3
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 1.5e-30 137.1 82 75.6
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 1.5e-27 127.1 101 55.4
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 1.4e-25 120.6 120 75.0
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 2.4e-25 119.8 121 57.0
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 3.3e-22 109.4 205 50.7
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 8.1e-21 104.8 59 79.7
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 1.2e-19 100.9 93 49.5
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 1.2e-19 100.9 98 46.9
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 7.1e-17 91.7 83 60.2
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 7.4e-14 81.6 100 44.0
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.0e-10 71.2 46 69.6
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 1.0e-10 71.2 91 45.1
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 1.7e-10 70.5 38 84.2
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 8.7e-07 58.2 82 79.3
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 4.3e-06 55.8 39 61.5
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.4e-06 55.1 106 41.5


User provided reference genes

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