Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0223271 Helianthus annuus HOM05D002373 ORTHO05D005805 6.9e-76 287.3 157 100.0
HanXRQChr12g0361121 Helianthus annuus HOM05D002373 ORTHO05D005805 5.1e-71 271.2 157 95.5
ECA234G1789 Erigeron canadensis HOM05D002373 ORTHO05D005805 2.5e-57 225.7 169 74.0
vmacro09528 Vaccinium macrocarpon HOM05D002373 ORTHO05D005805 1.5e-54 216.5 169 69.8
Hma1.2p1_0458F.1_g157050 Hydrangea macrophylla HOM05D002373 ORTHO05D005805 3.3e-54 215.3 159 73.0
HanXRQChr12g0364191 Helianthus annuus HOM05D002373 ORTHO05D005805 4.3e-54 214.9 156 71.8
Peaxi162Scf00069g00161 Petunia axillaris HOM05D002373 ORTHO05D005805 4.3e-54 214.9 168 69.6
ECA240G3893 Erigeron canadensis HOM05D002373 ORTHO05D005805 2.2e-53 212.6 161 68.3
CSS0014083 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 8.2e-53 210.7 169 67.5
CSS0015785 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 8.2e-53 210.7 169 67.5
DCAR_013112 Daucus carota HOM05D002373 ORTHO05D005805 1.4e-52 209.9 168 68.5
Nitab4.5_0001241g0050 Nicotiana tabacum HOM05D002373 ORTHO05D005805 1.4e-52 209.9 168 68.5
CAN.G162.52 Capsicum annuum HOM05D002373 ORTHO05D005805 4.1e-52 208.4 164 68.9
Solyc07g063080.4 Solanum lycopersicum HOM05D002373 ORTHO05D005805 6.9e-52 207.6 164 68.9
Sopen07g031270 Solanum pennellii HOM05D002373 ORTHO05D005805 6.9e-52 207.6 164 68.9
PGSC0003DMG400012444 Solanum tuberosum HOM05D002373 ORTHO05D005805 6.9e-52 207.6 164 68.9
Actinidia18767 Actinidia chinensis HOM05D002373 ORTHO05D005805 4.5e-51 204.9 158 69.6
Migut.M00800 Erythranthe guttata HOM05D002373 ORTHO05D005805 1.0e-50 203.8 169 63.9
Duzib213G0111 Durio zibethinus HOM05D002373 ORTHO05D005805 3.8e-50 201.8 169 66.3
Nitab4.5_0001336g0070 Nicotiana tabacum HOM05D002373 ORTHO05D005805 3.8e-50 201.8 172 66.3
Lsat_1_v5_gn_5_128020 Lactuca sativa HOM05D002373 ORTHO05D005805 6.5e-50 201.1 162 68.5
Lj8A155T98 Lonicera japonica HOM05D002373 ORTHO05D005805 6.5e-50 201.1 168 64.9
CSS0013354 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 8.5e-50 200.7 171 65.5
Eucgr.F03311 Eucalyptus grandis HOM05D002373 ORTHO05D005805 1.1e-49 200.3 168 67.3
Atru.chr2.2485 Acer truncatum HOM05D002373 ORTHO05D005805 1.4e-49 199.9 167 64.7
Dinv00353 Davidia involucrata HOM05D002373 ORTHO05D005805 1.9e-49 199.5 168 65.5
Dinv14923 Davidia involucrata HOM05D002373 ORTHO05D005805 1.9e-49 199.5 168 65.5
Oeu024908.1 Olea europaea HOM05D002373 ORTHO05D005805 2.5e-49 199.1 168 64.3
AUR62019435 Chenopodium quinoa HOM05D002373 ORTHO05D005805 3.2e-49 198.7 160 65.6
CSS0025198 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 4.2e-49 198.4 171 64.9
COL.COLO4_27181 Corchorus olitorius HOM05D002373 ORTHO05D005805 4.2e-49 198.4 169 64.5
Manes.15G087600 Manihot esculenta HOM05D002373 ORTHO05D005805 4.2e-49 198.4 166 66.9
EL10Ac4g08196 Beta vulgaris HOM05D002373 ORTHO05D005805 7.2e-49 197.6 161 65.2
SalBow6G1433 Salvia bowleyana HOM05D002373 ORTHO05D005805 7.2e-49 197.6 164 64.6
SalBow6G5097 Salvia bowleyana HOM05D002373 ORTHO05D005805 7.2e-49 197.6 164 64.6
PGR031G0335 Punica granatum HOM05D002373 ORTHO05D005805 9.4e-49 197.2 169 64.5
TAR627G0461 Trochodendron aralioides HOM05D002373 ORTHO05D005805 9.4e-49 197.2 171 63.7
AUR62039199 Chenopodium quinoa HOM05D002373 ORTHO05D005805 2.1e-48 196.1 160 65.0
Ah.04g164800 Amaranthus hybridus HOM05D002373 ORTHO05D005805 2.7e-48 195.7 161 65.8
CARHR043360 Cardamine hirsuta HOM05D002373 ORTHO05D005805 2.7e-48 195.7 167 64.7
Cc05_g11960 Coffea canephora HOM05D002373 ORTHO05D005805 2.7e-48 195.7 168 64.3
HanXRQChr10g0305641 Helianthus annuus HOM05D002373 ORTHO05D005805 3.6e-48 195.3 157 68.2
Nn1g04126 Nelumbo nucifera HOM05D002373 ORTHO05D005805 3.6e-48 195.3 170 63.5
Thecc.07G091400 Theobroma cacao HOM05D002373 ORTHO05D005805 3.6e-48 195.3 168 63.7
BcaB02g10931 Brassica carinata HOM05D002373 ORTHO05D005805 4.6e-48 194.9 172 63.4
BcaC08g44046 Brassica carinata HOM05D002373 ORTHO05D005805 4.6e-48 194.9 172 63.4
BolC6t36627H Brassica oleracea HOM05D002373 ORTHO05D005805 4.6e-48 194.9 172 63.4
C06p14470 Brassica napus HOM05D002373 ORTHO05D005805 6.1e-48 194.5 172 62.8
Ciclev10007467m.g Citrus clementina HOM05D002373 ORTHO05D005805 1.4e-47 193.4 166 62.7
Thhalv10011245m.g Eutrema salsugineum HOM05D002373 ORTHO05D005805 1.4e-47 193.4 166 65.1
Potri.011G118500 Populus trichocarpa HOM05D002373 ORTHO05D005805 1.4e-47 193.4 169 63.9
Sabra11G0103400 Salix brachista HOM05D002373 ORTHO05D005805 1.8e-47 193.0 169 63.3
HPP92_006380 Vanilla planifolia HOM05D002373 ORTHO05D005805 1.8e-47 193.0 160 64.4
AL1G61500 Arabidopsis lyrata HOM05D002373 ORTHO05D005805 2.3e-47 192.6 168 64.3
BraA05t20752Z Brassica rapa HOM05D002373 ORTHO05D005805 2.3e-47 192.6 172 62.8
Cfa020575 Carpinus fangiana HOM05D002373 ORTHO05D005805 2.3e-47 192.6 167 64.7
Aqoxy4G00738 Aquilegia oxysepala HOM05D002373 ORTHO05D005805 3.0e-47 192.2 172 61.0
BcaB02g10929 Brassica carinata HOM05D002373 ORTHO05D005805 6.7e-47 191.0 171 63.2
CiPaw.11G170300 Carya illinoinensis HOM05D002373 ORTHO05D005805 6.7e-47 191.0 167 64.7
Gohir.A01G063200 Gossypium hirsutum HOM05D002373 ORTHO05D005805 6.7e-47 191.0 169 62.1
RcHm_v2.0_Chr5g0033231 Rosa chinensis HOM05D002373 ORTHO05D005805 8.8e-47 190.7 168 62.5
ATR0737G089 Amborella trichopoda HOM05D002373 ORTHO05D005805 1.1e-46 190.3 158 63.9
Gohir.D01G049600 Gossypium hirsutum HOM05D002373 ORTHO05D005805 1.1e-46 190.3 169 62.1
Gorai.002G069500 Gossypium raimondii HOM05D002373 ORTHO05D005805 1.1e-46 190.3 169 62.1
QL08p022123 Quercus lobata HOM05D002373 ORTHO05D005805 1.5e-46 189.9 168 61.9
CDE10G0260 Ceratophyllum demersum HOM05D002373 ORTHO05D005805 2.0e-46 189.5 167 59.9
FvH4_3g19810 Fragaria vesca HOM05D002373 ORTHO05D005805 2.0e-46 189.5 168 61.9
Medtr8g463270 Medicago truncatula HOM05D002373 ORTHO05D005805 2.0e-46 189.5 165 64.8
Sc01g0008920 Simmondsia chinensis HOM05D002373 ORTHO05D005805 2.0e-46 189.5 165 62.4
TPR.G22533 Trifolium pratense HOM05D002373 ORTHO05D005805 2.0e-46 189.5 165 64.8
Aa31LG10G1990 Aethionema arabicum HOM05D002373 ORTHO05D005805 2.6e-46 189.1 171 62.6
AT1G53140 Arabidopsis thaliana HOM05D002373 ORTHO05D005805 3.3e-46 188.7 168 63.7
A05p18610 Brassica napus HOM05D002373 ORTHO05D005805 3.3e-46 188.7 172 62.2
Sp1g39690 Schrenkiella parvula HOM05D002373 ORTHO05D005805 3.3e-46 188.7 170 62.9
MSTRG.12902 Avicennia marina HOM05D002373 ORTHO05D005805 4.4e-46 188.3 167 58.1
FAN11G0806 Fragaria x ananassa HOM05D002373 ORTHO05D005805 4.4e-46 188.3 168 61.9
Haze_09436 Corylus avellana HOM05D002373 ORTHO05D005805 5.7e-46 188.0 167 63.5
Sed0011872 Sechium edule HOM05D002373 ORTHO05D005805 9.7e-46 187.2 156 63.5
Ca_23054_v3 Cicer arietinum L. HOM05D002373 ORTHO05D005805 1.3e-45 186.8 165 63.6
TWI38G2145 Tripterygium wilfordii HOM05D002373 ORTHO05D005805 1.3e-45 186.8 169 62.7
Carub.0001s4230 Capsella rubella HOM05D002373 ORTHO05D005805 1.7e-45 186.4 167 64.1
CiPaw.12G118900 Carya illinoinensis HOM05D002373 ORTHO05D005805 1.7e-45 186.4 167 64.1
HanXRQChr10g0302701 Helianthus annuus HOM05D002373 ORTHO05D005805 1.7e-45 186.4 136 72.1
Glyma.12G152100 Glycine max HOM05D002373 ORTHO05D005805 2.8e-45 185.7 165 62.4
MD03G1228500 Malus domestica HOM05D002373 ORTHO05D005805 2.8e-45 185.7 169 60.9
MSTRG.15235 Avicennia marina HOM05D002373 ORTHO05D005805 3.7e-45 185.3 168 59.5
MELO3C016695.2 Cucumis melo HOM05D002373 ORTHO05D005805 3.7e-45 185.3 163 62.0
Prupe.4G180200 Prunus persica HOM05D002373 ORTHO05D005805 3.7e-45 185.3 168 60.1
THA.LOC104818083 Tarenaya hassleriana HOM05D002373 ORTHO05D005805 3.7e-45 185.3 164 61.6
PSO210G2728 Papaver somniferum HOM05D002373 ORTHO05D005805 4.8e-45 184.9 170 61.8
PSO832G3381 Papaver somniferum HOM05D002373 ORTHO05D005805 4.8e-45 184.9 170 61.8
Phvul.011G158800 Phaseolus vulgaris HOM05D002373 ORTHO05D005805 4.8e-45 184.9 165 61.2
Psat4g163960 Pisum sativum HOM05D002373 ORTHO05D005805 6.3e-45 184.5 164 63.4
Os01g0748000 Oryza sativa ssp. japonica HOM05D002373 ORTHO05D005805 8.2e-45 184.1 161 59.6
Hund22839 Selenicereus undatus HOM05D002373 ORTHO05D005805 8.2e-45 184.1 169 59.2
Sed0015726 Sechium edule HOM05D002373 ORTHO05D005805 1.8e-44 183.0 164 59.8
CDE10G1360 Ceratophyllum demersum HOM05D002373 ORTHO05D005805 3.1e-44 182.2 162 59.9
Glyma.06G240400 Glycine max HOM05D002373 ORTHO05D005805 4.1e-44 181.8 165 60.6
Lalb_Chr03g0030661 Lupinus albus HOM05D002373 ORTHO05D005805 6.9e-44 181.0 166 60.8
SGA_v2.0_scaffold73G24259 Striga asiatica HOM05D002373 ORTHO05D005805 6.9e-44 181.0 167 61.1
Ah.06g184400 Amaranthus hybridus HOM05D002373 ORTHO05D005805 1.2e-43 180.3 157 63.7
Gohir.D05G352400 Gossypium hirsutum HOM05D002373 ORTHO05D005805 1.5e-43 179.9 165 61.2
Gorai.009G384500 Gossypium raimondii HOM05D002373 ORTHO05D005805 1.5e-43 179.9 165 61.2
VMungo1127G0771 Vigna mungo HOM05D002373 ORTHO05D005805 1.5e-43 179.9 165 60.6
Gohir.A04G032200 Gossypium hirsutum HOM05D002373 ORTHO05D005805 2.0e-43 179.5 165 60.6
CDE10G0423 Ceratophyllum demersum HOM05D002373 ORTHO05D005805 2.6e-43 179.1 158 60.8
ClCG11G018040 Citrullus lanatus HOM05D002373 ORTHO05D005805 4.5e-43 178.3 163 59.5
arahy.Tifrunner.gnm1.ann1.7QC79Z Arachis hypogaea HOM05D002373 ORTHO05D005805 5.9e-43 177.9 166 60.2
arahy.Tifrunner.gnm1.ann1.YQ4YNY Arachis hypogaea HOM05D002373 ORTHO05D005805 5.9e-43 177.9 166 60.2
Lj3g0007605 Lotus japonicus HOM05D002373 ORTHO05D005805 1.3e-42 176.8 164 61.6
BcaB02g10932 Brassica carinata HOM05D002373 ORTHO05D005805 2.2e-42 176.0 161 62.1
FAN21G3426 Fragaria x ananassa HOM05D002373 ORTHO05D005805 2.2e-42 176.0 168 60.7
PSO782G4223 Papaver somniferum HOM05D002373 ORTHO05D005805 2.2e-42 176.0 168 58.3
A01p26800 Brassica napus HOM05D002373 ORTHO05D005805 2.9e-42 175.6 158 62.0
BraA01t02609Z Brassica rapa HOM05D002373 ORTHO05D005805 2.9e-42 175.6 158 62.0
CANSAT56G0489 Cannabis sativa HOM05D002373 ORTHO05D005805 3.8e-42 175.3 168 58.9
SHI19230 Sapria himalayana HOM05D002373 ORTHO05D005805 6.5e-42 174.5 168 58.3
FAN16G1089 Fragaria x ananassa HOM05D002373 ORTHO05D005805 1.1e-41 173.7 167 60.5
Zm00001eb153090 Zea mays HOM05D002373 ORTHO05D005805 1.4e-41 173.3 161 57.8
GSVIVG01014318001 Vitis vinifera HOM05D002373 ORTHO05D005805 1.9e-41 172.9 150 65.3
BcaC06g33075 Brassica carinata HOM05D002373 ORTHO05D005805 6.1e-40 167.9 163 55.2
FAN25G1482 Fragaria x ananassa HOM05D002373 ORTHO05D005805 1.5e-38 163.3 171 55.6
Zm00001eb371030 Zea mays HOM05D002373 ORTHO05D005805 1.5e-38 163.3 161 54.7
unitig_26.g9526 Utricularia gibba HOM05D002373 ORTHO05D005805 6.3e-37 157.9 170 52.4
HanXRQChr10g0302211 Helianthus annuus HOM05D002373 ORTHO05D005805 2.0e-35 152.9 158 59.5
SEGI_09406 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 5.0e-34 148.3 162 52.5
Lalb_Chr01g0016821 Lupinus albus HOM05D002373 ORTHO05D005805 8.5e-34 147.5 146 57.5
CsaV3_4G033660 Cucumis sativus L. HOM05D002373 ORTHO05D005805 4.2e-33 145.2 134 58.2
SMO364G0144 Selaginella moellendorffii HOM05D002373 ORTHO05D005805 4.2e-33 145.2 173 48.6
AagrBONN_evm.TU.Sc2ySwM_368.419 Anthoceros agrestis HOM05D002373 ORTHO05D005805 3.1e-28 129.0 170 43.5
Mapoly0084s0004 Marchantia polymorpha HOM05D002373 ORTHO05D005805 1.2e-24 117.1 169 39.6
SEGI_27326 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 1.6e-24 116.7 158 46.8
Pp3c13_12110 Physcomitrium patens HOM05D002373 ORTHO05D005805 2.2e-21 106.3 172 39.5
Cpa.g.sc80.74 Carica papaya HOM05D002373 ORTHO05D005805 2.4e-20 102.8 123 55.3
SEGI_30818 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 2.3e-18 96.3 96 52.1
Lsat_1_v5_gn_9_97921 Lactuca sativa HOM05D002373 ORTHO05D005805 4.4e-14 82.0 89 52.8
MD11G1249600 Malus domestica HOM05D002373 ORTHO05D005805 7.0e-12 74.7 97 47.4


User provided reference genes

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