Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0222821 Helianthus annuus HOM05D000371 ORTHO05D008019 5.9e-55 217.2 106 100.0
HanXRQChr06g0164201 Helianthus annuus HOM05D000371 ORTHO05D008019 1.4e-27 126.3 61 96.7
HanXRQChr10g0312861 Helianthus annuus HOM05D000371 ORTHO05D008019 1.6e-20 102.8 51 92.2
MSTRG.8260 Avicennia marina HOM05D000371 ORTHO05D008019 6.2e-20 100.9 51 88.2
ECA238G3066 Erigeron canadensis HOM05D000371 ORTHO05D008019 1.8e-19 99.4 51 86.3
Lsat_1_v5_gn_2_118301 Lactuca sativa HOM05D000371 ORTHO05D008019 2.3e-19 99.0 51 86.3
Lj8A82T52 Lonicera japonica HOM05D000371 ORTHO05D008019 2.3e-19 99.0 82 63.4
Nn2g11167 Nelumbo nucifera HOM05D000371 ORTHO05D008019 4.0e-19 98.2 51 86.3
Hund13781 Selenicereus undatus HOM05D000371 ORTHO05D008019 5.2e-19 97.8 50 84.0
Ciclev10032851m.g Citrus clementina HOM05D000371 ORTHO05D008019 8.9e-19 97.1 50 84.0
DCAR_010468 Daucus carota HOM05D000371 ORTHO05D008019 8.9e-19 97.1 51 84.3
LjContig00141g0009492 Lotus japonicus HOM05D000371 ORTHO05D008019 1.2e-18 96.7 50 86.0
Zm00001eb289600 Zea mays HOM05D000371 ORTHO05D008019 1.2e-18 96.7 51 82.4
ATR0559G040 Amborella trichopoda HOM05D000371 ORTHO05D008019 1.5e-18 96.3 51 84.3
Migut.F01460 Erythranthe guttata HOM05D000371 ORTHO05D008019 1.5e-18 96.3 51 84.3
PSO339G5068 Papaver somniferum HOM05D000371 ORTHO05D008019 2.0e-18 95.9 51 82.4
PSO513G0068 Papaver somniferum HOM05D000371 ORTHO05D008019 2.0e-18 95.9 51 82.4
SGA_v2.0_scaffold221G42682 Striga asiatica HOM05D000371 ORTHO05D008019 2.0e-18 95.9 51 84.3
Aqoxy2G02270 Aquilegia oxysepala HOM05D000371 ORTHO05D008019 2.6e-18 95.5 51 78.4
Cc02_g07590 Coffea canephora HOM05D000371 ORTHO05D008019 2.6e-18 95.5 51 84.3
Dinv06770 Davidia involucrata HOM05D000371 ORTHO05D008019 2.6e-18 95.5 50 84.0
Dinv26032 Davidia involucrata HOM05D000371 ORTHO05D008019 2.6e-18 95.5 50 84.0
FvH4_7g22820 Fragaria vesca HOM05D000371 ORTHO05D008019 2.6e-18 95.5 50 86.0
FAN01G2167 Fragaria x ananassa HOM05D000371 ORTHO05D008019 2.6e-18 95.5 50 86.0
FAN03G2093 Fragaria x ananassa HOM05D000371 ORTHO05D008019 2.6e-18 95.5 50 86.0
FAN06G1941 Fragaria x ananassa HOM05D000371 ORTHO05D008019 2.6e-18 95.5 50 86.0
FAN06G2012 Fragaria x ananassa HOM05D000371 ORTHO05D008019 2.6e-18 95.5 50 86.0
FAN10G2093 Fragaria x ananassa HOM05D000371 ORTHO05D008019 2.6e-18 95.5 50 86.0
RcHm_v2.0_Chr1g0367961 Rosa chinensis HOM05D000371 ORTHO05D008019 2.6e-18 95.5 50 86.0
Sc11g0007880 Simmondsia chinensis HOM05D000371 ORTHO05D008019 3.4e-18 95.1 50 82.0
TAR636G0788 Trochodendron aralioides HOM05D000371 ORTHO05D008019 3.4e-18 95.1 82 57.3
TAR636G0917 Trochodendron aralioides HOM05D000371 ORTHO05D008019 3.4e-18 95.1 82 57.3
GSVIVG01016514001 Vitis vinifera HOM05D000371 ORTHO05D008019 3.4e-18 95.1 51 80.4
Atru.chr12.417 Acer truncatum HOM05D000371 ORTHO05D008019 4.4e-18 94.7 50 80.0
Actinidia02935 Actinidia chinensis HOM05D000371 ORTHO05D008019 4.4e-18 94.7 51 80.4
Nitab4.5_0001002g0040 Nicotiana tabacum HOM05D000371 ORTHO05D008019 4.4e-18 94.7 51 84.3
Nitab4.5_0012064g0010 Nicotiana tabacum HOM05D000371 ORTHO05D008019 4.4e-18 94.7 51 84.3
Os05g0458100 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D008019 4.4e-18 94.7 51 80.4
Peaxi162Scf00440g00111 Petunia axillaris HOM05D000371 ORTHO05D008019 4.4e-18 94.7 51 84.3
CiPaw.01G289600 Carya illinoinensis HOM05D000371 ORTHO05D008019 5.8e-18 94.4 50 82.0
FAN01G1452 Fragaria x ananassa HOM05D000371 ORTHO05D008019 5.8e-18 94.4 50 84.0
MBI14_g04656_MAGBIO Magnolia biondii HOM05D000371 ORTHO05D008019 5.8e-18 94.4 51 78.4
CSS0017369 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D008019 7.5e-18 94.0 51 82.4
CAN.G1826.1 Capsicum annuum HOM05D000371 ORTHO05D008019 7.5e-18 94.0 51 82.4
COL.COLO4_15088 Corchorus olitorius HOM05D000371 ORTHO05D008019 7.5e-18 94.0 50 78.0
EL10Ac2g04725 Beta vulgaris HOM05D000371 ORTHO05D008019 9.8e-18 93.6 50 80.0
Gohir.A06G166600 Gossypium hirsutum HOM05D000371 ORTHO05D008019 9.8e-18 93.6 50 78.0
Gohir.D06G172100 Gossypium hirsutum HOM05D000371 ORTHO05D008019 9.8e-18 93.6 50 78.0
Gorai.010G201100 Gossypium raimondii HOM05D000371 ORTHO05D008019 9.8e-18 93.6 50 78.0
MD07G1201400 Malus domestica HOM05D000371 ORTHO05D008019 9.8e-18 93.6 50 82.0
Psat2g040520 Pisum sativum HOM05D000371 ORTHO05D008019 9.8e-18 93.6 49 81.6
Solyc04g011620.3 Solanum lycopersicum HOM05D000371 ORTHO05D008019 9.8e-18 93.6 51 82.4
Sopen04g005800 Solanum pennellii HOM05D000371 ORTHO05D008019 9.8e-18 93.6 51 82.4
PGSC0003DMG400006351 Solanum tuberosum HOM05D000371 ORTHO05D008019 9.8e-18 93.6 51 82.4
Thecc.10G036900 Theobroma cacao HOM05D000371 ORTHO05D008019 9.8e-18 93.6 50 78.0
TPR.G3468 Trifolium pratense HOM05D000371 ORTHO05D008019 9.8e-18 93.6 49 81.6
MD01G1136400 Malus domestica HOM05D000371 ORTHO05D008019 1.3e-17 93.2 50 82.0
Phvul.001G233400 Phaseolus vulgaris HOM05D000371 ORTHO05D008019 1.3e-17 93.2 51 78.4
Ca_05882_v3 Cicer arietinum L. HOM05D000371 ORTHO05D008019 1.7e-17 92.8 49 79.6
Glyma.11G220100 Glycine max HOM05D000371 ORTHO05D008019 1.7e-17 92.8 51 76.5
Glyma.18G037300 Glycine max HOM05D000371 ORTHO05D008019 1.7e-17 92.8 51 76.5
Cpa.g.sc1.428 Carica papaya HOM05D000371 ORTHO05D008019 2.2e-17 92.4 50 78.0
Medtr5g080300 Medicago truncatula HOM05D000371 ORTHO05D008019 2.2e-17 92.4 49 79.6
arahy.Tifrunner.gnm1.ann1.JFIJ48 Arachis hypogaea HOM05D000371 ORTHO05D008019 2.9e-17 92.0 49 79.6
Duzib114G0336 Durio zibethinus HOM05D000371 ORTHO05D008019 2.9e-17 92.0 50 80.0
Os01g0844300 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D008019 2.9e-17 92.0 51 74.5
TWI38G0343 Tripterygium wilfordii HOM05D000371 ORTHO05D008019 2.9e-17 92.0 50 80.0
Haze_17090 Corylus avellana HOM05D000371 ORTHO05D008019 3.7e-17 91.7 50 82.0
Prupe.2G238000 Prunus persica HOM05D000371 ORTHO05D008019 3.7e-17 91.7 50 80.0
unitig_70.g32541 Utricularia gibba HOM05D000371 ORTHO05D008019 3.7e-17 91.7 51 80.4
vmacro05072 Vaccinium macrocarpon HOM05D000371 ORTHO05D008019 3.7e-17 91.7 51 80.4
Cfa001451 Carpinus fangiana HOM05D000371 ORTHO05D008019 6.4e-17 90.9 50 80.0
Lalb_Chr04g0251111 Lupinus albus HOM05D000371 ORTHO05D008019 6.4e-17 90.9 49 77.6
HanXRQChr04g0123541 Helianthus annuus HOM05D000371 ORTHO05D008019 8.3e-17 90.5 45 91.1
QL08p060252 Quercus lobata HOM05D000371 ORTHO05D008019 1.1e-16 90.1 50 78.0
QL08p060477 Quercus lobata HOM05D000371 ORTHO05D008019 1.1e-16 90.1 50 78.0
arahy.Tifrunner.gnm1.ann1.1L6ASM Arachis hypogaea HOM05D000371 ORTHO05D008019 1.4e-16 89.7 49 77.6
AUR62040720 Chenopodium quinoa HOM05D000371 ORTHO05D008019 1.4e-16 89.7 50 78.0
CANSAT56G3583 Cannabis sativa HOM05D000371 ORTHO05D008019 1.9e-16 89.4 49 77.6
Manes.07G117900 Manihot esculenta HOM05D000371 ORTHO05D008019 1.9e-16 89.4 50 74.0
PGR142G1272 Punica granatum HOM05D000371 ORTHO05D008019 2.4e-16 89.0 51 76.5
CsaV3_6G001250 Cucumis sativus L. HOM05D000371 ORTHO05D008019 5.4e-16 87.8 50 74.0
Sabra10G0155600 Salix brachista HOM05D000371 ORTHO05D008019 5.4e-16 87.8 50 76.0
Potri.008G057900 Populus trichocarpa HOM05D000371 ORTHO05D008019 9.2e-16 87.0 50 76.0
AUR62012115 Chenopodium quinoa HOM05D000371 ORTHO05D008019 1.6e-15 86.3 50 76.0
MELO3C008222.2 Cucumis melo HOM05D000371 ORTHO05D008019 3.5e-15 85.1 50 72.0
Potri.010G201600 Populus trichocarpa HOM05D000371 ORTHO05D008019 3.5e-15 85.1 50 74.0
CBR_g11111 Chara braunii HOM05D000371 ORTHO05D008019 6.0e-15 84.3 56 66.1
VMungo1383G3505 Vigna mungo HOM05D000371 ORTHO05D008019 7.8e-15 84.0 44 81.8
AagrBONN_evm.TU.Sc2ySwM_117.2045 Anthoceros agrestis HOM05D000371 ORTHO05D008019 1.0e-14 83.6 74 54.1
CDE04G1493 Ceratophyllum demersum HOM05D000371 ORTHO05D008019 1.0e-14 83.6 51 76.5
Sabra08G0042500 Salix brachista HOM05D000371 ORTHO05D008019 1.0e-14 83.6 50 72.0
THA.LOC104810039 Tarenaya hassleriana HOM05D000371 ORTHO05D008019 1.0e-14 83.6 81 53.1
HPP92_019450 Vanilla planifolia HOM05D000371 ORTHO05D008019 2.3e-14 82.4 48 75.0
ClCG11G006790 Citrullus lanatus HOM05D000371 ORTHO05D008019 3.0e-14 82.0 51 70.6
Pp3c15_21140 Physcomitrium patens HOM05D000371 ORTHO05D008019 3.9e-14 81.6 51 66.7
Rhsim03G0135800 Rhododendron simsii HOM05D000371 ORTHO05D008019 3.9e-14 81.6 45 80.0
Sed0007769 Sechium edule HOM05D000371 ORTHO05D008019 3.9e-14 81.6 50 68.0
BcaB01g00086 Brassica carinata HOM05D000371 ORTHO05D008019 5.1e-14 81.3 49 67.3
BcaB02g07683 Brassica carinata HOM05D000371 ORTHO05D008019 5.1e-14 81.3 50 68.0
vmacro07056 Vaccinium macrocarpon HOM05D000371 ORTHO05D008019 5.1e-14 81.3 45 77.8
BcaC07g39878 Brassica carinata HOM05D000371 ORTHO05D008019 1.1e-13 80.1 49 67.3
A09p48530 Brassica napus HOM05D000371 ORTHO05D008019 1.1e-13 80.1 49 67.3
C08p30830 Brassica napus HOM05D000371 ORTHO05D008019 1.1e-13 80.1 49 67.3
BolC8t50709H Brassica oleracea HOM05D000371 ORTHO05D008019 1.1e-13 80.1 49 67.3
BraA09t40305Z Brassica rapa HOM05D000371 ORTHO05D008019 1.1e-13 80.1 49 67.3
Sp5g06960 Schrenkiella parvula HOM05D000371 ORTHO05D008019 1.1e-13 80.1 49 67.3
Aa31LG10G10550 Aethionema arabicum HOM05D000371 ORTHO05D008019 1.9e-13 79.3 50 66.0
AL5G36690 Arabidopsis lyrata HOM05D000371 ORTHO05D008019 3.3e-13 78.6 50 66.0
AT3G55520 Arabidopsis thaliana HOM05D000371 ORTHO05D008019 4.3e-13 78.2 50 66.0
CARHR165580 Cardamine hirsuta HOM05D000371 ORTHO05D008019 4.3e-13 78.2 50 66.0
SMO143G0281 Selaginella moellendorffii HOM05D000371 ORTHO05D008019 5.6e-13 77.8 51 62.7
Ah.16g102470 Amaranthus hybridus HOM05D003811 ORTHO05D008019 7.3e-13 77.4 43 76.7
Thhalv10010745m.g Eutrema salsugineum HOM05D000371 ORTHO05D008019 9.5e-13 77.0 49 65.3
Carub.0005s2225 Capsella rubella HOM05D000371 ORTHO05D008019 1.2e-12 76.6 50 64.0
SEGI_15620 Sequoiadendron giganteum HOM05D000371 ORTHO05D008019 2.1e-12 75.9 46 65.2
SEGI_39657 Sequoiadendron giganteum HOM05D000371 ORTHO05D008019 2.1e-12 75.9 46 65.2
Pp3c9_23060 Physcomitrium patens HOM05D000371 ORTHO05D008019 1.4e-11 73.2 82 45.1
EL10Ac5g11814 Beta vulgaris HOM05D000371 ORTHO05D026989 5.8e-10 67.8 37 75.7
Nitab4.5_0001495g0120 Nicotiana tabacum HOM05D000371 ORTHO05D008019 5.8e-10 67.8 39 79.5
EL10As1g23098 Beta vulgaris HOM05D000371 ORTHO05D008019 1.7e-09 66.2 40 67.5
BraA06t26822Z Brassica rapa HOM05D000371 ORTHO05D001484 6.6e-06 54.3 90 35.6
THA.LOC104818983 Tarenaya hassleriana HOM05D000371 ORTHO05D001484 6.6e-06 54.3 90 33.3
ClCG05G007100 Citrullus lanatus HOM05D000371 ORTHO05D001484 8.6e-06 53.9 90 35.6
Os08g0525600 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D001484 8.6e-06 53.9 80 38.8


User provided reference genes

Program Settings