Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0222561 Helianthus annuus HOM05D006817 ORTHO05D008603 8.0e-275 949.9 509 100.0
Lsat_1_v5_gn_9_59361 Lactuca sativa HOM05D006817 ORTHO05D008603 5.5e-183 644.8 524 68.3
ECA232G4264 Erigeron canadensis HOM05D006817 ORTHO05D008603 7.0e-178 627.9 520 66.5
CSS0030257 Camellia sinensis var. sinensis HOM05D006817 ORTHO05D008603 3.0e-173 612.5 519 64.0
Actinidia00992 Actinidia chinensis HOM05D006817 ORTHO05D008603 1.2e-172 610.5 517 63.6
Rhsim09G0184300 Rhododendron simsii HOM05D006817 ORTHO05D008603 1.2e-172 610.5 529 64.3
Migut.F00593 Erythranthe guttata HOM05D006817 ORTHO05D008603 4.1e-170 602.1 518 63.7
TAR623G0065 Trochodendron aralioides HOM05D006817 ORTHO05D008603 2.7e-169 599.4 517 63.4
Peaxi162Scf00739g00017 Petunia axillaris HOM05D006817 ORTHO05D008603 5.0e-168 595.1 516 62.6
GSVIVG01032704001 Vitis vinifera HOM05D006817 ORTHO05D008603 1.9e-167 593.2 515 63.5
HanXRQChr15g0493791 Helianthus annuus HOM05D006817 ORTHO05D008603 2.3e-165 586.3 501 66.9
Solyc06g050210.3 Solanum lycopersicum HOM05D006817 ORTHO05D008603 2.3e-165 586.3 519 61.7
PGR044G0301 Punica granatum HOM05D006817 ORTHO05D008603 6.8e-165 584.7 522 62.1
Potri.019G048700 Populus trichocarpa HOM05D006817 ORTHO05D008603 1.2e-164 583.9 523 62.1
Sopen06g015650 Solanum pennellii HOM05D006817 ORTHO05D008603 1.2e-164 583.9 519 61.5
Eucgr.J00131 Eucalyptus grandis HOM05D006817 ORTHO05D008603 2.6e-164 582.8 513 61.4
vmacro09974 Vaccinium macrocarpon HOM05D006817 ORTHO05D008603 5.7e-164 581.6 528 61.6
Nitab4.5_0011715g0010 Nicotiana tabacum HOM05D006817 ORTHO05D008603 3.7e-163 578.9 516 61.0
Thecc.10G176900 Theobroma cacao HOM05D006817 ORTHO05D008603 3.7e-163 578.9 517 62.9
TWI09G1614 Tripterygium wilfordii HOM05D006817 ORTHO05D008603 1.8e-162 576.6 516 62.0
MSTRG.27274 Avicennia marina HOM05D006817 ORTHO05D008603 3.1e-162 575.9 517 61.9
Oeu036532.1 Olea europaea HOM05D006817 ORTHO05D008603 4.1e-162 575.5 518 61.0
CAN.G169.4 Capsicum annuum HOM05D006817 ORTHO05D008603 5.9e-161 571.6 516 59.9
Aqoxy4G02362 Aquilegia oxysepala HOM05D006817 ORTHO05D008603 1.7e-160 570.1 517 61.3
PSO170G5674 Papaver somniferum HOM05D006817 ORTHO05D008603 6.6e-160 568.2 511 60.7
Atru.chr12.157 Acer truncatum HOM05D006817 ORTHO05D008603 1.1e-159 567.4 517 60.7
Gohir.A10G180300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 1.5e-159 567.0 518 61.2
Gorai.011G210100 Gossypium raimondii HOM05D006817 ORTHO05D008603 1.2e-158 563.9 518 61.2
Lj5g0023407 Lotus japonicus HOM05D006817 ORTHO05D008603 5.2e-157 558.5 517 60.0
THA.LOC104816518 Tarenaya hassleriana HOM05D006817 ORTHO05D008603 8.9e-157 557.8 510 59.8
Ciclev10031264m.g Citrus clementina HOM05D006817 ORTHO05D008603 2.0e-156 556.6 528 58.9
Sed0020006 Sechium edule HOM05D006817 ORTHO05D008603 2.6e-156 556.2 517 59.8
Cc02_g05530 Coffea canephora HOM05D006817 ORTHO05D008603 5.7e-156 555.1 518 60.2
Prupe.2G261900 Prunus persica HOM05D006817 ORTHO05D008603 2.8e-155 552.7 518 59.8
arahy.Tifrunner.gnm1.ann1.6ZT9VY Arachis hypogaea HOM05D006817 ORTHO05D008603 4.9e-155 552.0 516 59.3
arahy.Tifrunner.gnm1.ann1.6QBV89 Arachis hypogaea HOM05D006817 ORTHO05D008603 6.3e-155 551.6 516 59.3
ClCG07G004850 Citrullus lanatus HOM05D006817 ORTHO05D008603 6.3e-155 551.6 513 59.6
Nn2g10348 Nelumbo nucifera HOM05D006817 ORTHO05D008603 8.3e-155 551.2 514 60.3
Sp6g37510 Schrenkiella parvula HOM05D006817 ORTHO05D008603 5.4e-154 548.5 516 58.9
CsaV3_5G010750 Cucumis sativus L. HOM05D006817 ORTHO05D008603 7.0e-154 548.1 512 59.0
Glyma.19G067100 Glycine max HOM05D006817 ORTHO05D008603 7.0e-154 548.1 518 59.5
Phvul.001G074700 Phaseolus vulgaris HOM05D006817 ORTHO05D008603 7.0e-154 548.1 515 60.0
Thhalv10013352m.g Eutrema salsugineum HOM05D006817 ORTHO05D008603 4.5e-153 545.4 509 59.3
Psat6g035880 Pisum sativum HOM05D006817 ORTHO05D008603 5.9e-153 545.0 514 59.7
Medtr1g007630 Medicago truncatula HOM05D006817 ORTHO05D008603 7.8e-153 544.7 514 59.5
DCAR_014588 Daucus carota HOM05D006817 ORTHO05D008603 1.0e-152 544.3 518 59.8
TPR.G24539 Trifolium pratense HOM05D006817 ORTHO05D008603 1.7e-152 543.5 521 58.5
MELO3C020113.2 Cucumis melo HOM05D006817 ORTHO05D008603 2.3e-152 543.1 515 58.4
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.5e-151 540.4 504 60.1
MD01G1164100 Malus domestica HOM05D006817 ORTHO05D008603 1.9e-151 540.0 516 59.5
BcaC06g32240 Brassica carinata HOM05D006817 ORTHO05D008603 3.3e-151 539.3 505 59.6
Gohir.D10G187300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 3.3e-151 539.3 518 59.3
MBI15_g27349_MAGBIO Magnolia biondii HOM05D006817 ORTHO05D008603 9.5e-151 537.7 577 54.1
BolC9t59902H Brassica oleracea HOM05D006817 ORTHO05D008603 2.8e-150 536.2 510 58.2
A10p30880 Brassica napus HOM05D006817 ORTHO05D008603 4.7e-150 535.4 505 59.2
COL.COLO4_10038 Corchorus olitorius HOM05D006817 ORTHO05D008603 6.1e-150 535.0 504 60.7
C09p71390 Brassica napus HOM05D006817 ORTHO05D008603 1.0e-149 534.3 505 59.4
Cpa.g.sc19.86 Carica papaya HOM05D006817 ORTHO05D008603 1.0e-149 534.3 512 58.0
EL10Ac2g04256 Beta vulgaris HOM05D006817 ORTHO05D008603 1.4e-149 533.9 516 56.4
BraA10t45133Z Brassica rapa HOM05D006817 ORTHO05D008603 3.0e-149 532.7 512 58.4
Sc11g0005730 Simmondsia chinensis HOM05D006817 ORTHO05D008603 6.8e-149 531.6 510 59.0
Os12g0112300 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 4.4e-148 528.9 502 58.0
Manes.10G004900 Manihot esculenta HOM05D006817 ORTHO05D008603 4.9e-147 525.4 524 57.8
Lalb_Chr22g0360921 Lupinus albus HOM05D006817 ORTHO05D008603 3.2e-146 522.7 502 57.0
ATR0681G057 Amborella trichopoda HOM05D006817 ORTHO05D008603 4.1e-146 522.3 518 56.8
CDE04G2280 Ceratophyllum demersum HOM05D006817 ORTHO05D008603 5.4e-146 521.9 502 57.0
Zm00001eb406320 Zea mays HOM05D006817 ORTHO05D008603 3.5e-145 519.2 509 57.4
HPP92_019064 Vanilla planifolia HOM05D006817 ORTHO05D008603 1.1e-143 514.2 512 55.5
PSO017G6024 Papaver somniferum HOM05D006817 ORTHO05D008603 1.5e-143 513.8 478 60.7
Ah.16g104230 Amaranthus hybridus HOM05D006817 ORTHO05D008603 3.3e-143 512.7 544 52.4
Lj8A57G58 Lonicera japonica HOM05D006817 ORTHO05D008603 8.9e-141 504.6 406 69.2
QL08p064576 Quercus lobata HOM05D006817 ORTHO05D008603 9.8e-140 501.1 477 61.0
Cfa001223 Carpinus fangiana HOM05D006817 ORTHO05D008603 8.3e-139 498.0 464 62.1
SGA_v2.0_scaffold44G16643 Striga asiatica HOM05D006817 ORTHO05D008603 2.1e-134 483.4 503 55.7
AUR62003430 Chenopodium quinoa HOM05D006817 ORTHO05D008603 2.0e-132 476.9 518 53.5
CANSAT56G1261 Cannabis sativa HOM05D006817 ORTHO05D008603 7.1e-130 468.4 469 57.8
Haze_17339 Corylus avellana HOM05D006817 ORTHO05D008603 9.2e-130 468.0 500 56.6
AUR62012358 Chenopodium quinoa HOM05D006817 ORTHO05D008603 2.3e-128 463.4 477 56.8
FAN03G2834 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.9e-127 460.3 562 50.7
Sabra19G0058300 Salix brachista HOM05D000055 ORTHO05D000057 2.0e-124 450.3 465 56.8
FAN10G2384 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.9e-122 443.7 470 56.2
Aa31LG11G6330 Aethionema arabicum HOM05D006817 ORTHO05D008603 7.1e-122 441.8 508 52.4
FAN01G1353 Fragaria x ananassa HOM05D006817 ORTHO05D008603 6.0e-121 438.7 475 55.6
CiPaw.02G198400 Carya illinoinensis HOM05D006817 ORTHO05D008603 3.0e-120 436.4 434 58.5
FvH4_7g25670 Fragaria vesca HOM05D006817 ORTHO05D008603 5.3e-117 425.6 429 56.2
CARHR207930 Cardamine hirsuta HOM05D006817 ORTHO05D008603 7.6e-116 421.8 343 65.0
AT5G05310 Arabidopsis thaliana HOM05D006817 ORTHO05D008603 3.2e-106 389.8 354 59.9
MD07G1231900 Malus domestica HOM05D006817 ORTHO05D008603 5.6e-95 352.4 383 56.7
AUR62031486 Chenopodium quinoa HOM05D006817 ORTHO05D008603 3.8e-91 339.7 499 44.3
Pp3c22_2490 Physcomitrium patens HOM05D006817 ORTHO05D008603 2.3e-88 330.5 533 40.7
unitig_46.g18743 Utricularia gibba HOM05D006817 ORTHO05D008603 5.3e-85 319.3 371 48.5
Ca_12776_v3 Cicer arietinum L. HOM05D006817 ORTHO05D008603 1.9e-82 310.8 289 61.2
Carub.0006s0424 Capsella rubella HOM05D006817 ORTHO05D008603 9.4e-82 308.5 281 60.1
Nitab4.5_0000109g0530 Nicotiana tabacum HOM05D006817 ORTHO05D008603 3.7e-70 270.0 235 60.9
RcHm_v2.0_Chr1g0371891 Rosa chinensis HOM05D006817 ORTHO05D008603 5.9e-68 262.7 276 54.3
SEGI_05100 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 3.6e-65 253.4 251 55.0
MD05G1328700 Malus domestica HOM05D006817 ORTHO05D008603 5.9e-60 236.1 250 59.2
VMungo0647G0362 Vigna mungo HOM05D006817 ORTHO05D008603 2.7e-57 227.3 278 51.1
RcHm_v2.0_Chr1g0371881 Rosa chinensis HOM05D006817 ORTHO05D008603 4.0e-56 223.4 162 67.9
MSTRG.24128 Avicennia marina HOM05D006817 ORTHO05D008603 6.3e-54 216.1 151 70.9
VMungo0647G0650 Vigna mungo HOM05D006817 ORTHO05D008603 1.4e-53 214.9 205 55.6
QL10p038395 Quercus lobata HOM05D006817 ORTHO05D008603 3.7e-46 190.3 162 66.0
MD07G1231800 Malus domestica HOM05D006817 ORTHO05D008603 1.1e-45 188.7 148 62.2
Oeu020109.1 Olea europaea HOM05D006817 ORTHO05D008603 7.5e-39 166.0 158 54.4
QL05p063879 Quercus lobata HOM05D006817 ORTHO05D008603 9.2e-37 159.1 146 62.3
Cre08.g361000 Chlamydomonas reinhardtii HOM05D006817 ORTHO05D008603 1.2e-33 148.7 502 29.5
SEGI_41528 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 1.2e-31 142.1 155 53.5
QL03p030054 Quercus lobata HOM05D006817 ORTHO05D008603 1.9e-26 124.8 90 74.4
QL06p040335 Quercus lobata HOM05D006817 ORTHO05D008603 3.3e-26 124.0 90 74.4
QL09p047975 Quercus lobata HOM05D000176 ORTHO05D000106 1.5e-23 115.2 90 70.0
FvH4_7g25690 Fragaria vesca HOM05D006817 ORTHO05D008603 1.7e-19 101.7 111 51.4
QL08p064573 Quercus lobata HOM05D006817 ORTHO05D008603 6.6e-19 99.8 66 66.7
Hund15836 Selenicereus undatus HOM05D006817 ORTHO05D008603 5.6e-18 96.7 72 68.1
QL10p065865 Quercus lobata HOM05D006817 ORTHO05D008603 4.0e-16 90.5 71 67.6
Os11g0112900 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 2.0e-15 88.2 130 43.8
FAN06G4794 Fragaria x ananassa HOM05D006817 ORTHO05D008603 2.6e-15 87.8 98 51.0
FAN06G1140 Fragaria x ananassa HOM05D006817 ORTHO05D008603 2.4e-13 81.3 58 70.7
MD17G1183400 Malus domestica HOM05D006817 ORTHO05D008603 1.6e-12 78.6 58 67.2
PGSC0003DMG400024308 Solanum tuberosum HOM05D006817 ORTHO05D008603 4.0e-08 63.9 45 57.8


User provided reference genes

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